Stability studies of extracellular domain two of neural-cadherin

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1814, Issue 12, 2011, Pages 1841-1845

  Vunnam, Nagamani ^a   McCool, John K ^a   Williamson, Michael ^a   Pedigo, Susan ^a  

^a UNIVERSITY OF MISSISSIPPI   (United States)

Author keywords

Circular dichroism; Electrostatic repulsion; Thermal denaturation

Indexed keywords

CADHERIN; DIMER;

AMINO ACID SEQUENCE; ARTICLE; CALCIUM BINDING; DIMERIZATION; ENERGY TRANSFER; KINETICS; LINKAGE ANALYSIS; PRIORITY JOURNAL; PROTEIN DENATURATION; PROTEIN DOMAIN; PROTEIN STABILITY; THERMOSTABILITY;

AMINO ACID SEQUENCE; ANIMALS; CADHERINS; CALCIUM; CLONING, MOLECULAR; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; MICE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN BINDING; PROTEIN STABILITY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 84860418445     PISSN: 15709639     EISSN: 18781454     Source Type: Journal    
DOI: 10.1016/j.bbapap.2011.08.002     Document Type: Article

References (32)

1. A.M. Fannon, and D.R. Colman A model for central synaptic junctional complex formation based on the differential adhesive specificities of the cadherins Neuron 17 1996 423 434 (Pubitemid 26322214)
2. O. Bozdagi, W. Shan, H. Tanaka, D.L. Benson, and G.W. Huntley Increasing numbers of synaptic puncta during late-phase LTP: N-cadherin is synthesized, recruited to synaptic sites, and required for potentiation Neuron 28 2000 245 259
3. T. Manabe, H. Togashi, N. Uchida, S.C. Suzuki, Y. Hayakawa, M. Yamamoto, H. Yoda, T. Miyakawa, M. Takeichi, and O. Chisaka Loss of cadherin-11 adhesion receptor enhances plastic changes in hippocampal synapses and modifies behavioral responses Mol. Cell. Neurosci. 15 2000 534 546 (Pubitemid 30436927)
4. D.A. Rusakov, and A. Fine Extracellular Ca2+ depletion contributes to fast activity-dependent modulation of synaptic transmission in the brain Neuron 37 2003 287 297 (Pubitemid 36143823)
5. N. Vunnam, and S. Pedigo Sequential binding of calcium leads to dimerization in neural cadherin Biochemistry 50 2011 2973 2982
6. N. Vunnam, J. Flint, A. Balbo, P. Schuck, and S. Pedigo Dimeric states of neural- and epithelial-cadherins are distinguished by the rate of disassembly Biochemistry 50 2011 2951 2961
7. P. Katsamba, K. Carroll, G. Ahlsen, F. Bahna, J. Vendome, S. Posy, M. Rajebhosale, S. Price, T.M. Jessell, A. Ben-Shaul, L. Shapiro, and B.H. Honig Linking molecular affinity and cellular specificity in cadherin-mediated adhesion Proc. Natl. Acad. Sci. U. S. A. 106 2009 11594 11599
8. B. Nagar, M. Overduin, M. Ikura, and J.M. Rini Structural basis of calcium-induced E-cadherin rigidification and dimerization Nature 380 1996 360 364 (Pubitemid 26097119)
9. M. Ozawa Lateral dimerization of the E-cadherin extracellular domain is necessary but not sufficient for adhesive activity J. Biol. Chem. 277 2002 19600 19608 (Pubitemid 34967473)
10. A. Prakasam, Y.H. Chien, V. Maruthamuthu, and D.E. Leckband Calcium site mutations in cadherin: impact on adhesion and evidence of cooperativity Biochemistry 45 2006 6930 6939 (Pubitemid 43856677)
11. O.J. Harrison, E.M. Corps, T. Berge, and P.J. Kilshaw The mechanism of cell adhesion by classical cadherins: the role of domain 1 J. Cell Sci. 118 2005 711 721 (Pubitemid 40372580)
12. O. Courjean, G. Chevreux, E. Perret, A. Morel, S. Sanglier, N. Potier, J. Engel, A. van Dorsselaer, and H. Feracci Modulation of E-cadherin monomer folding by cooperative binding of calcium ions Biochemistry 47 2008 2339 2349 (Pubitemid 351304539)
13. G. Handschuh, B. Luber, P. Hutzler, H. Hofler, and K.F. Becker Single amino acid substitutions in conserved extracellular domains of E-cadherin differ in their functional consequences J. Mol. Biol. 314 2001 445 454 (Pubitemid 33131848)
14. O.J. Harrison, X. Jin, S. Hong, F. Bahna, G. Ahlsen, J. Brasch, Y. Wu, J. Vendome, K. Felsovalyi, C.M. Hampton, R.B. Troyanovsky, A. Ben-Shaul, J. Frank, S.M. Troyanovsky, L. Shapiro, and B. Honig The extracellular architecture of adherens junctions revealed by crystal structures of type I cadherins Structure 19 2011 244 256
15. O.J. Harrison, F. Bahna, P.S. Katsamba, X. Jin, J. Brasch, J. Vendome, G. Ahlsen, K.J. Carroll, S.R. Price, B. Honig, and L. Shapiro Two-step adhesive binding by classical cadherins Nat. Struct. Mol. Biol. 17 2010 348 357
16. S. Hong, R.B. Troyanovsky, and S.M. Troyanovsky Cadherin exits the junction by switching its adhesive bond J. Cell Biol. 192 2011 1073 1083
17. A. Prasad, N.A. Housley, and S. Pedigo Thermodynamic stability of domain 2 of epithelial cadherin Biochemistry 43 2004 8055 8066 (Pubitemid 38808260)
18. A. Prasad, H. Zhao, J.M. Rutherford, N.A. Housley, C. Nichols, and S. Pedigo Effect of linker segments upon the stability of epithelial-cadherin domain 2 Proteins 62 2006 111 121 (Pubitemid 43063009)
19. C.N. Pace, F. Vajdos, L. Fee, G. Grimsley, and T. Gray How to measure and predict the molar extinction coefficient of a protein Protein Sci. 4 1995 2411 2423
20. W. Pearson, LALIGN - find multiple matching subsegments in two sequences, ed. 2009.
21. R. Fraczkiewicz, and W. Braun Exact and efficient calculation of the accessible surface areas and their gradients for macromolecules J. Comput. Chem. 19 1998 319 333 (Pubitemid 128592649)
22. T.J. Boggon, J. Murray, S. Chappuis-Flament, E. Wong, B.M. Gumbiner, and L. Shapiro C-cadherin ectodomain structure and implications for cell adhesion mechanisms Science 296 2002 1308 1313 (Pubitemid 34522784)
23. D. Haussinger, T. Ahrens, H.J. Sass, O. Pertz, J. Engel, and S. Grzesiek Calcium-dependent homoassociation of E-cadherin by NMR spectroscopy: changes in mobility, conformation and mapping of contact regions J. Mol. Biol. 324 2002 823 839 (Pubitemid 36044115)
24. S. Maldonado, M.P. Irun, L.A. Campos, J.A. Rubio, A. Luquita, A. Lostao, R. Wang, E.B. Garcia-Moreno, and J. Sancho Salt-induced stabilization of apoflavodoxin at neutral pH is mediated through cation-specific effects Protein Sci. 11 2002 1260 1273 (Pubitemid 34441243)
25. A. Koide, M.R. Jordan, S.R. Horner, V. Batori, and S. Koide Stabilization of a fibronectin type III domain by the removal of unfavorable electrostatic interactions on the protein surface Biochemistry 40 2001 10326 10333 (Pubitemid 32800140)
26. B.J. Placek, and L.M. Gloss The N-terminal tails of the H2A-H2B histones affect dimer structure and stability Biochemistry 41 2002 14960 14968 (Pubitemid 35470675)
27. L.M. Gloss, and B.J. Placek The effect of salts on the stability of the H2A-H2B histone dimer Biochemistry 41 2002 14951 14959 (Pubitemid 35470674)
28. N. Vunnam, and S. Pedigo Prolines in betaA-sheet of N-cadherin act as a Switch to Control the Dynamics of the Equilibrium between Monomer and Dimer Biochemistry 50 2011 6959 6965
29. A. Prasad, and S. Pedigo Calcium-dependent stability studies of domains 1 and 2 of epithelial cadherin Biochemistry 44 2005 13692 13701 (Pubitemid 41507450)
30. K. Tamura, W.S. Shan, W.A. Hendrickson, D.R. Colman, and L. Shapiro Structure-function analysis of cell adhesion by neural (N-) cadherin Neuron 20 1998 1153 1163 (Pubitemid 28293132)
31. S. Aragon, and D.K. Hahn Precise boundary element computation of protein transport properties: diffusion tensors, specific volume, and hydration Biophys. J. 91 2006 1591 1603 (Pubitemid 44352426)
32. L.L.C. Schrodinger The PyMOL Molecular Graphics System, Version 1.3r1 www.pymol.org 2010