Molecular phylogeny, evolution, and biogeography of South American epiphytic cacti

International Journal of Plant Sciences

Volumn 172, Issue 7, 2011, Pages 902-914

  Calvente, Alice ^a,d   Zappi, Daniela C ^b   Forest, Félix ^c   Lohmann, Lúcia G ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b ROYAL BOTANIC GARDENS   (United Kingdom)

^c JODRELL LABORATORY   (United Kingdom)

^d FEDERAL UNIVERSITY OF RIO GRANDE DO NORTE   (Brazil)

Author keywords

Andes; Atlantic forest; Brazil; Cactaceae; Rhipsalis

Indexed keywords

BIOGEOGRAPHICAL REGION; CACTUS; EPIPHYTE; EVOLUTIONARY BIOLOGY; HABITAT SELECTION; HUMID ENVIRONMENT; MOLECULAR ANALYSIS; MORPHOLOGY; PHYLOGENETICS; PHYLOGENY; PLASTID; STEM;

ANDES; ATLANTIC FOREST; BRAZIL;

CACTACEAE; RHIPSALIS; TRACHEOPHYTA;

EID: 84860407639     PISSN: 10585893     EISSN: None     Source Type: Journal    
DOI: 10.1086/660881     Document Type: Article

References (60)

1. Backeberg C 1942 Zur Geschichte der Kakteen im Verlauf der Entwicklung des amerikanischen Kontinentalbildes. Cactaceae (Berlin) 1942:4-72.
2. Barthlott W 1983 Biogeography and evolution in Neo and Paleotropical Rhipsalinae (Cactaceae). Dispersal and Distribution: An International Symposium, Sonderbände des Naturwissenschaftlichen Vereins, Hamburg 7:241-248.
3. Barthlott W, NP Taylor 1995 Notes towards a monograph of Rhipsalideae (Cactaceae). Bradleya 13:43-79.
4. Bauer R 2003 A synopsis of the tribe Hylocereeae F. Buxb. Cact Syst Initiat 17:3-63.
5. Benzing DH 1987 Vascular epiphytism: taxonomic participation and adaptive diversity. Ann Mo Bot Gard 74:183-204.
6. Bollback JP 2006 Simmap: stochastic character mapping of discrete traits on phylogenies. BMC Bioinformatics 7:88.
7. Bollback JP 2009 Simmap 1.5 documentation online. http://www.simmap.com/pgs/docs.html.
8. Calvente A 2010 Filogenia molecular: evolução e sistemática de Rhipsalis. PhD diss. Universidade de São Paulo.
9. Calvente A, RC Vieira, RHP Andreata 2008 Stem anatomy of Rhipsalis (Cactaceae) and its relevance for taxonomy. Plant Syst Evol 276:1-7.
10. Calvente A, DC Zappi, F Forest, LG Lohmann 2011 Molecular phylogeny of tribe Rhipsalideae (Cactaceae) and taxonomic implications for Schlumbergera and Hatiora. Mol Phylogenet Evol 58:456-468.
11. Castellanos MC, P Wilson, JD Thomson 2004 "Anti-bee" and "probird" changes during the evolution of hummingbird pollination in penstemon flowers. J Evol Biol 17:876-885.
12. Clausing G, S Renner 2001 Evolution of growth form in epiphytic Dissochaeteae (Melastomataceae). Org Divers Evol 1:45-60.
13. Crayn DM, K Winter, AC Smith 2004 Multiple origins of crassulacean acid metabolism and the epiphytic habit in the Neotropical family Bromeliaceae. Proc Natl Acad Sci USA 101:3703-3708.
14. Croizat L 1952 Manual of phytogeography. Junk, The Hague
15. Doyle JA, JL Doyle 1987 A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11-15.
16. Dubuisson JY, H Schneider, S Hennequin 2009 Epiphytism in ferns: diversity and history. C R Biol 332:120-128.
17. Edwards EJ, R Nyffeler, MJ Donoghue 2005 Basal cactus phylogeny: implications of Pereskia (Cactaceae) paraphyly for the transition to the cactus life form. Am J Bot 92:1177-1188.
18. Farris JS, M Källersjö, AG Kluge, C Bult 1994 Testing the significance of incongruence. Cladistics 10:315-319.
19. Fenster CB, WS Armbruster, P Wilson, MR Dudash, JD Thomson 2004 Pollination syndromes and floral specialization. Annu Rev Ecol Evol Syst 35:375-403.
20. Fleming TH, CT Sahley, N Holland, JD Nason, JL Hamrick 2001 Sonoran desert columnar cacti and the evolution of generalized pollination systems. Ecol Monogr 71:511-530.
21. Gentry AH, CH Dodson 1987 Diversity and biogeography of Neotropical vascular epiphytes. Ann Mo Bot Gard 74:205-233.
22. Glover BJ 2007 Flower and flowering: an integrated approach. Oxford University Press, New York.
23. Gravendeel B, A Smithson, FJW Slik, A Schuiteman 2004 Epiphytism and pollinator specialization: drivers for orchid diversity? Philos Trans R Soc B 359:1523-1535.
24. Griffith MP 2009 Evolution of leaf and habit characters in Opuntioideae (Cactaceae): reconstruction of ancestral form. Bradleya 27:49-58.
25. Harris AJ, QY Xiang 2009 Estimating ancestral distributions of lineages with uncertain sister groups: a statistical approach to dispersal-vicariance analysis and a case using Aesculus L. (Sapindaceae) including fossils. J Syst Evol 47:349-368.
26. Hernańdez HM, C Gómez-Hinostrosa, RT Bárcenas 2001 Diversity, spatial arrangement, and endemism of Cactaceae in the Huizache area, a hot-spot in the Chihuahuan desert. Biodivers Conserv 10:1097-1112.
27. Hershkovitz MA, EA Zimmer 1997 On the evolutionary origins of the cacti. Taxon 46:217-232.
28. Hunt D, N Taylor, G Charles 2006 The new cactus lexicon. DH Books, Milborne Port.
29. Lewis PO 2001 A likelihood approach to estimating phylogeny from discrete morphological character data. Syst Biol 50:913-925.
30. Maddison DR, WP Maddison 2005 MacClade 4: analysis of phylogeny and character evolution, version 4.08. Sinauer, Sunderland, MA.
31. Mauseth JD 2000 Theoretical aspects of surface-to-volume ratios and water-storage capacities of succulent shoots. Am J Bot 87:1107-1115.
32. Nyffeler R 2002 Phylogenetic relationships in the cactus family (Cactaceae) based on evidence from trnK-matK and trnL-trnF sequences. Am J Bot 89:312-326.
33. Nyffeler R, U Eggli 2010 A farewell to date ideas and concepts: molecular phylogenetics and a revised suprageneric classification of the family Cactaceae. Schumannia 6:109-149.
34. Nylander JAA, U Olson, P Alström, I Sanmarti{dotless}ń 2008 Accounting for phylogenetic uncertainty in biogeography: a Bayesian approach to dispersal-vicariance analysis of the thrushes (Aves: Turdus). Syst Biol 57:257-268.
35. Pellmyr O 2002 Pollination by animals. Pages 157-184 in CM Herrera, O Pellmyr, eds. Plant-animal interactions: an evolutionary approach. Blackwell, Malden, MA.
36. Pennington RT, DE Prado, CA Pendry 2000 Neotropical seasonally dry forest and quaternary vegetation changes. J Biogeogr 27:261-273.
37. Pimienta-Barrios E, RF Castillo 2002 Reproductive biology. Pages 75-90 in PS Nobel, ed. Cacti: biology and uses. University of California Press, Berkeley.
38. Porembsky S, G Martinelli, R Ohlemüller, W Barthlott 1998 Diversity and ecology of saxicolous vegetation mats on inselbergs in the Brazilian Atlantic rainforest. Diversity Distrib 4:107-119.
39. Posada D, KA Crandall 1998 Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
40. R Development Core Team 2010 R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. http://www.R-project.org.
41. Ronquist F 1996 DIVA, version 1.1. Computer program and manual available by anonymous FTP from Uppsala University (ftp://ftp.uu.se or ftp://ftp.systbot.uu.se).
42. Ronquist F, J Huelsenbeck 2003 MrBayes3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
43. Safford HD 2007 Brazilian Páramos IV: phytogeography of the campos de altitude. J Biogeogr 34:1701-1722.
44. Shaw J, EB Lickey, EE Schilling, RL Small 2007 Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. Am J Bot 94:275-288.
45. Simmons MP, KM Pickett, M Miya 2004 How meaningful are Bayesian support values? Mol Biol Evol 21:188-199.
46. Suzuki Y, GV Glazko, M Nei 2002 Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proc Natl Acad Sci USA 99:16138-16143.
47. Swofford DL 2002 PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer, Sunderland, MA.
48. Taylor NP 1997 Cactaceae. Pages 17-20 in S. Oldfield, ed. Cactus and succulent plants: status survey and conservation action plan. IUCN/SSC, Cactus and Succulent Specialist Group, Gland.
49. Templeton A 1983 Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and apes. Evolution 37:221-244.
50. Tsutsumi C, M Kato 2006 Evolution of epiphytes in Davalliaceae and related ferns. Bot J Linn Soc 151:495-510.
51. Tsutsumi C, T Yukawa, NS Lee, CS Lee, M Kato 2007 Phylogeny and comparative seed morphology of epiphytic and terrestrial Liparis (Orchidaceae) in Japan. J Plant Res 120:405-412.
52. van Dulmen A 2001 Pollination and phenology of flowers in the canopy of two contrasting rain forest types in Amazonia, Colombia. Plant Ecology 153:73-85.
53. Wallace RS, AC Gibson 2002 Evolution and Systematics. Pages 1-21 in PS Nobel, ed. Cacti: biology and uses. University of California Press, Berkeley.
54. Wikiström N, P Kenrick, MW Chase 1999 Epiphytism and terrestrialization in tropical Huperzia (Lycopodiaceae). Plant Syst Evol 218:221-243.
55. Yu Y, AJ Harris, X He 2010 S-DIVA (statistical dispersal-vicariance analysis): a tool for inferring biogeographical histories. Mol Phylogenet Evol 56:848-850.
56. Yu Y, AJ Harris, X He 2011 RASP (reconstruct ancestral state in phylogenies). http://mnh.scu.edu.cn/soft/blog/RASP.
57. Yukawa T, WL Stern 2002 Comparative vegetative anatomy and systematics of Cymbidium (Cymbidieae: Orchidaceae). Bot J Linn Soc 138:383-419.
58. Zotz G, V Thomas 1999 How much water is in the tank? model calculations for two epiphytic bromeliads. Ann Bot 83:183-192.
59. Zwickl DJ 2006 Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. PhD diss. University of Texas, Austin.
60. Zwickl DJ 2010 Garli documentation online. https://www.nescent.org/wg_garli/Manual.