Toward objective evaluation of proteomic algorithms

Nature Methods

Volumn 9, Issue 5, 2012, Pages 455-456

  Yates, John R ^a   Park, Sung Kyu Robin ^a   Delahunty, Claire M ^a   Xu, Tao ^a   Savas, Jeffrey N ^a   Cociorva, Daniel ^a   Carvalho, Paulo Costa ^b  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b INSTITUTO CARLOS CHAGAS   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; COMPUTER PROGRAM; EXPERT SYSTEM; INFORMATION SCIENCE; MASS SPECTROMETRY; NOTE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; SENSITIVITY AND SPECIFICITY;

ALGORITHMS; EVALUATION STUDIES AS TOPIC; PROTEOMICS; TANDEM MASS SPECTROMETRY;

EID: 84860380761     PISSN: 15487091     EISSN: 15491676     Source Type: Journal    
DOI: 10.1038/nmeth.1983     Document Type: Note

References (13)

1. Eng, J.K., McCormack, A.L. & Yates, J.R. J. Am. Soc. Mass Spectrom. 5, 976-989 (1994).
2. Sadygov, R.G. & Yates, J.R. III. Anal. Chem. 75, 3792-3798 (2003).
3. Geer, L.Y. et al. J. Proteome Res. 3, 958-964 (2004).
4. Craig, R. & Beavis, R.C. Bioinformatics 20, 1466-1467 (2004).
5. Perkins, D.N. et al. Electrophoresis 20, 3551-3567 (1999).
6. MacCoss, M.J. et al. Anal. Chem. 75, 6912-6921 (2003).
7. Park, S.K. et al. Nat. Methods 5, 319-322 (2008).
8. Cox, J. et al. Nat. Protoc. 4, 698-705 (2009).
9. Beausoleil, S.A. et al. Nat. Biotechnol. 24, 1285-1292 (2006).
10. Lu, B. et al. Anal. Chem. 79, 1301-1310 (2007).
11. Balgley, B.M. et al. Mol. Cell. Proteomics 6, 1599-1608 (2007).
12. Nahnsen, S. et al. J. Proteome Res. 10, 3332-3343 (2011).
13. Colaert, N. et al. Methods Mol. Biol. 753, 373-398 (2011).