Effects of amendments of ferulic acid on soil microbial communities in the rhizosphere of cucumber (Cucumis sativus L.)

European Journal of Soil Biology

Volumn 50, Issue , 2012, Pages 191-197

  Zhou, Xingang ^a   Wu, Fengzhi ^a  

^a NORTHEAST AGRICULTURAL UNIVERSITY   (China)

Author keywords

Cucumis sativus L.; Ferulic acid; PCR DGGE; Real time PCR; Soil microbial communities

Indexed keywords

BACTERIA (MICROORGANISMS); CUCUMIS SATIVUS;

EID: 84860363635     PISSN: 11645563     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ejsobi.2012.03.001     Document Type: Article

References (45)

1. Yu J.Q., Shou S.Y., Qian Y.R., Zhu Z.Z., Hu W.H. Autotoxic potential of cucurbit crops. Plant Soil 2000, 223:147-151.
2. Singh H.P., Batish D.R., Kohli R.K. Autotoxicity: concept, organisms and ecological significance. Crit. Rev. Plant Sci. 1999, 18:757-772.
3. Huang H.C., Chou C.H., Erickson R.S. Soil sickness and its control. Allelopathy J. 2006, 18:1-21.
4. Kreye C., Bouman B.A.M., Faronilo J.E., Llorca L. Causes for soil sickness affecting early plant growth in aerobic rice. Field Crops Res. 2009, 114:182-187.
5. Asao T., Pramanik M.H.R., Tomita K., Ohba Y., Ohta K., Hosoki T., Matsui Y. Influences of phenolics isolated from the nutrient solution nourishing growing cucumber (Cucumis sativus L.) plants on fruit yield. J. Jpn. Soc. Hortic. Sci. 1999, 68:847-853.
6. Yu J.Q., Matsui Y. Phytotoxic substances in the root exudates of Cucumis sativus L. J. Chem. Ecol. 1994, 20:21-31.
7. Inderjit, Duke S.O. Ecophysiological aspects of allelopathy. Planta 2003, 217:529-539.
8. Rice E.L. Allelopathy 1984, Academic Press, Orlando.
9. Bertin C., Yang X., Weston L.A. The role of root exudates and allelochemicals in the rhizosphere. Plant Soil 2003, 256:67-83.
10. Black R.L.B., Dix N.J. Spore germination and germ hyphal growth of microfungi from litter and soil in the presence of ferulic acid. Trans. Br. Mycol. Soc. 1976, 66:305-311.
11. Wu H.S., Raza W., Fan J.Q., Sun Y.G., Bao W., Liu D.Y., Huang Q.W., Mao Z.S., Shen Q.R., Miao W.G. Antibiotic effect of exogenously applied salicylic acid on in vitro soilborne pathogen, Fusarium oxysporum f.sp.niveum. Chemosphere 2008, 74:45-50.
12. Kong C.H., Wang P., Zhao H., Xu X.H., Zhu Y.D. Impact of allelochemical exuded from allelopathic rice on soil microbial community. Soil Biol. Biochem. 2008, 40:1862-1869.
13. Inderjit Soil microorganisms: an important determinant of allelopathic activity. Plant Soil 2005, 274:227-236.
14. Blum U., Shafer S.R. Microbial populations and phenolic acids in soil. Soil Biol. Biochem. 1988, 20:793-800.
15. Qu X.H., Wang J.G. Effect of amendments with different phenolic acids on soil microbial biomass, activity, and community diversity. Appl. Soil Ecol. 2008, 39:172-179.
16. Shafer S.R., Blum U. Influence of phenolic acids on microbial populations in the rhizosphere of cucumber. J. Chem. Ecol. 1991, 17:369-389.
17. Sparling G.P., Ord B.G., Vaughan D. Changes in microbial biomass, activity in soils amended with phenolic acids. Soil Biol. Biochem. 1981, 13:455-460.
18. Shi S., Richardson A.E., O'Callaghan M., Deangelis K.M., Jones E.E., Stewart A., Firestone M.K., Condron L.M. Effects of selected root exudate components on soil bacterial communities. FEMS Microbiol. Ecol. 2011, 77:600-610.
19. Garbeva P., van Veen J.A., van Elsas J.D. Microbial diversity in soil: selection of microbial populations by plant and soil type and implication on disease suppressiveness. Annu. Rev. Phytopathol. 2004, 42:243-270.
20. Pace N.R. A molecular view of microbial diversity and the biosphere. Science 1997, 276:734-740.
21. Muyzer G., de Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes encoding for 16S rRNA. Appl. Environ. Microbiol. 1993, 59:695-700.
22. Fierer N., Jackson J.A., Vilgalys R., Jackson R.B. Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays. Appl. Environ. Microbiol. 2005, 71:4117-4120.
23. Politycka B., Wójcik-Wojtkowiak D., Pudelski T. Phenolic compounds as a cause of phytotoxicity in greenhouse substrates used in cucumber growing. Acta Hort. 1984, 156:89-94.
24. Pramanik M.H.R., Nagai M., Asao T., Matsui Y. Effects of temperature and photoperiod on phytotoxic root exudates of cucumber (Cucumis sativus) in hydroponic culture. J. Chem. Ecol. 2000, 26:1953-1967.
25. Blum U., Weed S.B., Dalton B.R. Influence of various soil factors on the effects of ferulic acid on leaf expansion of cucumber seedlings. Plant Soil 1987, 98:111-130.
26. Xu Y., Wang G., Jin J., Liu J., Zhang Q., Liu X. Bacterial communities in soybean rhizosphere in response to soil type, soybean genotype, and their growth stage. Soil Biol. Biochem. 2009, 41:919-925.
27. Tabatabai M.A. Soil enzymes. Methods of Soil Analysis 1994, 775-833. Soil Society of America, Madison. R.W. Weaver, J.R. Angle, P.S. Bottomley (Eds.).
28. Vance E.D., Brookes P.C., Jenkinson D.S. An extraction method for measuring soil microbial biomass C. Soil Biol. Biochem. 1987, 19:703-707.
29. Cahyani V.R., Matsuya K., Asakawa S., Kimura M. Succession and phylogenetic composition of bacterial communities responsible for the composting process of rice straw estimated by PCR-DGGE analysis. Soil Sci. Plant Nutr. 2003, 49:619-630.
30. Gardes M., Bruns T.D. ITS primers with enhanced specificity for basidiomycetes: application to the identification of mycorrhiza and rusts. Mol. Ecol. 1993, 2:113-118.
31. White T.J., Buns T.D., Lee S., Taylor J. Analysis of phylogenetic relationships by amplification and direct sequencing of ribosomal RNA genes. PCR Protocols: A Guide to Methods and Applications 1990, 315-322. Academic, New York. M.A. Innis, D.H. Gefland, J.J. Sninsky, T.J. White (Eds.).
32. Zhou X., Yu G., Wu F. Effects of intercropping cucumber with onion or garlic on soil enzyme activities, microbial communities and cucumber yield. Eur. J. Soil Biol. 2011, 47:279-287.
33. Ibekwe A.M., Poss J.A., Grattan S.R., Grieve C.M., Suarez D. Bacterial diversity in cucumber (Cucumis sativus) rhizosphere in response to salinity, soil pH, and boron. Soil Biol. Biochem. 2010, 42:567-575.
34. Muscolo A., Sidari M. Seasonal fluctuations in soil phenolics of a coniferous forest: effects on seed germination of different coniferous species. Plant Soil 2006, 284:305-318.
35. Yu J.Q., Matsui Y. Effects of root exudates of cucumber (Cucumis sativus) and allelochemicals on ion uptake by cucumber seedling. J. Chem. Ecol. 1997, 23:817-827.
36. Nannipieri P., Grego S., Ceccanti B. Ecological significance of biological activity. Soil Biochemistry 1990, 293-355. Marcel Dekker, New York. J.M. Bollag, G. Stotzky (Eds.).
37. Wang M.L., Gu Y., Kong C.H. Effects of rice phenolic acids on microorganisms and enzyme activities of non-flooded and flooded paddy soils. Allelopathy J. 2008, 22:311-319.
38. Souto X.C., Chiapusio G., Pellissier F. Relationships between phenolics and soil microorganisms in spruce forests: significance for natural regeneration. J. Chem. Ecol. 2000, 26:2025-2034.
39. Blum U., Staman K.L., Flint L.J., Shaffer S.R. Induction and/or selection of phenolic acid-utilizing bulk-soil and rhizosphere bacteria and their influence on phenolic acid phytotoxicity. J. Chem. Ecol. 2000, 26:2059-2078.
40. Wu H., Luo J., Raza W., Liu Y., Gu M., Chen G., Hu X., Wang J., Mao Z., Shen Q. Effect of exogenously added ferulic acid on in vitro Fusarium oxysporum f. sp. niveum. Scientia Horticulturae 2010, 124:448-453.
41. Paul E.A. Soil Microbiology, Ecology, and Biochemistry 2007, Academic Press, San Diego.
42. Acosta-Martínez V., Upchurch D.R., Schubert A.M., Porter D., Wheeler T. Early impacts of cotton and peanut cropping systems on selected soil chemical, physical, microbiological and biochemical properties. Biol. Fertil. Soils 2004, 40:44-54.
43. Sharma S., Aneja M.K., Mayer J., Schloter M., Munch J.C. RNA fingerprinting of microbial community in the rhizosphere soil of grain legumes. FEMS Microbiol. Lett. 2004, 240:181-186.
44. Acosta-Martínez V., Bell C.E., Morris B.E.L., Zak J., Allen V.G. Long-term soil microbial community and enzyme activity responses to an integrated cropping-livestock system in a semi-arid region. Agric. Ecosys. Environ. 2010, 137:231-240.
45. Walker T.S., Bais H.P., Grotewold E., Vivanco J.M. Root exudation and rhizosphere biology. Plant Physiol. 2003, 132:44-51.