Construction of a high density integrated genetic map for cucumber (Cucumis sativus L.)

Theoretical and Applied Genetics

Volumn 124, Issue 2, 2012, Pages 249-259

  Zhang, Wei Wei ^a,b   Pan, Jun Song ^a   He, Huan Le ^a   Zhang, Chi ^a   Li, Zheng ^a   Zhao, Jun Long ^a   Yuan, Xiao Jun ^a   Zhu, Li Huang ^c   Huang, San Wen ^d   Cai, Run ^a  

^a SHANGHAI JIAO TONG UNIVERSITY   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^c INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

^d INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOMES;

CONSENSUS MAP; CUCUMBER GENOMES; CUCUMIS SATIVUS; CUCURBITACEAE; EXTERNAL QUALITY; GENETIC ANALYSIS; GENETIC DISTANCES; HIGH MARKER DENSITY;

GENETIC ENGINEERING;

CUCUMIS SATIVUS; CUCURBITACEAE;

MICROSATELLITE DNA;

ARTICLE; CHROMOSOME MAP; CROSS BREEDING; CUCUMBER; GENE LIBRARY; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; SEQUENCE TAGGED SITE;

CHROMOSOME MAPPING; CROSSES, GENETIC; CUCUMIS SATIVUS; GENE LIBRARY; GENETIC MARKERS; MICROSATELLITE REPEATS; POLYMORPHISM, GENETIC; SEQUENCE TAGGED SITES;

EID: 84860346589     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-011-1701-x     Document Type: Article

References (36)

1. Arumuganathan K, Earle E (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9:208
2. Bassam BJ, Caetana-Anolles G, Gressho PM (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 196:80-83
3. Bradeen JM, Staub JE, Wye C, Antonise R, Peleman J (2001) Towards an expanded and integrated linkage map of cucumber (Cucumis sativus L.). Genome 44:111-119
4. Chiba N, Suwabe K, Nunome T, Hirai M (2003) Development of micro satellite markers in melon (Cucumis melo L.) and their application to major cucurbit crops. Breed Sci 53:21-27
5. Danin-Poleg Y, Reis N, Tzuri G, Katzir N (2001) Development and characterisation of microsatellite markers in Cucumis. Theor Appl Genet 102:61-72
6. Fazio G, Staub JE, Chung SM (2002) Development and characterization of PCR markers in cucumber. J Amer Soc Hort Sci 127(4):545-557
7. Fazio G, Staub JE, Stevens MR (2003) Genetic mapping and QTL analysis of horticultural traits in cucumber (Cucumis sativus L.) using recombinant inbred lines. Theor Appl Genet 107:864-874
8. Gustafson JP, Ma XF, Korzum V, Snape JW (2009) A consensus map of rye integrated mapping data from five mapping populations. Theor Appl Genet 118:793-800
9. Hayashi M, Miyahara A, Sato S et al (2001) Construction of a genetic linkage map of the model legume Lotus japonicus using an intra specific F2 population. DNA Res 8:301-310
10. Huang SW, Li R, Zhang Z et al (2009) The genome of the cucumber, Cucumis sativus L. Nat Genet 41:1275-1281
11. Hwang TY, Sayama T, Takahashi M et al (2009) High-density integrated linkage map based on SSR markers in soybean. DNA Res 16:213-225
12. Isobe S, Kolliker R, Hisano H, Sasamoto S, Wada T, Klimenko I, Okumura K, Tabata S (2009) Construction of a consensus linkage map for red clover (Trifolium pratense L.). BMC Plant Biol 9:57
13. Jiang S, Yuan XJ, Pan JS, He HL, Cai R (2008) Quantitative trait locus analysis of lateral branch-related traits in cucumber (Cucumis sat ivus L.) using recombinant inbred lines. Sci China C Life Sci 51:833-841
14. Kennard WK, Poetter K, Dijkhuizen A et al (1994) Linkages among RFLP, RAPD, isozyme, disease-resistance, and morphological markers in narrow and wide crosses of cucumber. Theor Appl Genet 89:42-48
15. Kong Q, Xiang C, Yu Z, Zhang C, Liu F, Peng C, Peng X (2007) Mining and charactering microsatellites in Cucumis melo expressed sequence tags from sequence database. Mol Ecol Notes 7:281-283
16. Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugen 12:172-175
17. Li XZ, Pan JS, Wang G, Tian LB, Si LT, Wu AZ, Cai R (2005) Localization of genes for lateral branch and female sex expression and construction of a molecular linkage map in cucumber (Cucumis sativus L.) with RAPD markers. Prog Nat Sci 15:143-148
18. Li Z, Huang SW, Liu SQ et al (2009) Molecular isolation of the M gene suggests that a conserved-residue conversion induces the formation of bisexual flowers in cucumber plants. Genetics 182:1381-1385
19. Mace ES, Rami JF, Bouchet S et al (2009) A consensus genetic map of sorghum that integrates multiple component maps and highthroughput Diversity Array Technology (DArT) markers. BMC Plant Biology 9:1-13
20. Muchero W, Diop NN, Bhat PR et al (2009) A consensus genetic map of cowpea [Vigna unguiculata (L) Walp.] and synteny based on EST-derived SNPs. PNAS 106:18159-18164
21. Park YH, Sensoy S, Wye C, Antonise R, Peleman J, Havey MJ (2000) A genetic map of cucumber composed of RAPDs, RFLPs, AFLPs, and loci conditioning resistance to papaya ringspot and zucchini yellow mosaic viruses. Genome 43:1003-1010
22. Ren Y, Zhang ZH, Liu JH, Staub JE, Han YH et al (2009) An integrated genetic and cytogenentic map of the cucumber genome. PloS ONE 4:e5795
23. Rieseberg LH, Livingstone K (2003) Evolution Chromosomal speciation in primates. Science 300:267-268
24. Ritschel PS, deLins TCL, Tristan RL, Buso GSC, Buso JA, Ferreira ME (2004) Development of microsatellite markers from an enriched genomic library for genetic analysis of melon (Cucumis melo L.). BMC Plant Biol 4:9
25. Serquen FC, Bacher J, Staub JE (1997) Mapping and QTL analysis of horticultural traits in a narrow cross in cucumber (Cucumis sativus L.) using random-ampliWed polymorphic DNA markers. Mol Breed 3:257-268
26. Staub JE, Meglic V (1993) Molecular genetic markers and their legal relevance for cultivar discrimination, a case study in cucumber. Hort Technol 3:291-300
27. Sun Z, Staub JE, Chung SM, Lower RL (2006) Identi Wcation and comparative analysis of quantitative trait loci associated with parthenocarpy in processing cucumber. Plant Breed 125:281-287
28. Truco JM, Antonise R, Lavelle D et al (2007) A high-density integrated genetic linkage map of lettuce (Lactuca spp.). Theor Appl Genet 115:735-746
29. Van Ooijen JW, Voorrips RE (2001) Join Map 3.0: software for the calculation of genetic linkage maps. Plant Research International, Wageningen
30. Voorrips RE (2002) MapChart, software for the graphical presentation of linkage maps and QTLs. J Hered 93:77-78
31. Wang G, Pan JS, Li XZ, He HL, Wu AZ, Cai R (2005) Construction of a cucumber genetic linkage map with SRAP markers and location of the genes for lateral branch traits. Sci China C 48:213-220
32. Watcharawongpaiboon N, Chunwongse J (2007) Development and Characterization of Microsatellite Markers from an Enriched Genomic Library of Cucumber (Cucumis sativus). Plant breed 127:74-81
33. Xie J, Wehner CT. (2001) Gene list 2001 for cucumber. Cucurbit Genetics Cooperative Report
34. Yuan XJ, Li XZ, Pan JS et al (2008a) Genetic linkage map construction and location of QTLs for fruit-related traits in cucumber. Plant Breeding 127(2):180-188
35. Yuan XJ, Pan JS, Cai R et al (2008b) Genetic mapping and QTL analysis of fruit and Xower related traits in cucumber (Cucumis sativus L.) using recombinant inbred lines. Euphytica 164:473-491
36. Zhang WW, He HL, Guan Y, Du H, Yuan LH, Li Z, Yao DQ, Pan JS, Cai R (2010) Identification and mapping of molecular markers linked to the tuberculate fruit gene in the cucumber (Cucumis sativus L.). Theor Appl Genet 120(3):645-654