Estimation of photosynthesis parameters for a modified Farquhar-von Caemmerer-Berry model using simultaneous estimation method and nonlinear mixed effects model

Environmental and Experimental Botany

Volumn 82, Issue , 2012, Pages 66-73

  Qian, T ^a   Elings, A ^a   Dieleman, J A ^a   Gort, G ^a   Marcelis, L F M ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

CO 2; Light; Repeated measurements; Rubisco activation; Temperature; Tomato

Indexed keywords

CARBON DIOXIDE; ENVIRONMENTAL CHANGE; ESTIMATION METHOD; FRUIT; LIGHT EFFECT; MODEL VALIDATION; NONLINEARITY; PARAMETERIZATION; PHOTOSYNTHESIS; TEMPERATURE EFFECT;

LYCOPERSICON ESCULENTUM;

EID: 84860326638     PISSN: 00988472     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.envexpbot.2012.03.014     Document Type: Article

References (47)

1. Bernacchi C.J., Portis A.R., Nakano H., von Caemmerer S., Long S.P. Temperature response of mesophyll conductance. Implications for the determination of Rubisco enzyme kinetics and for limitations to photosynthesis in vivo. Plant Physiology 2002, 130:1992-1998.
2. Bernacchi C.J., Singsaas E.L., Pimentel C., Portis A.R.J., Long S.P. Improved temperature response functions for models of Rubisco-limited photosynthesis. Plant Cell Environ 2001, 24:253-259.
3. Braune H., Müller J., Diepenbrock W. Integrating effects of leaf nitrogen, age, and growth temperature into the photosynthesis-stomatal conductance model LEAF3-N parameterized for barley (Hordeum vulgare L.). Ecological Modelling 2009, 220:1599-1612.
4. Brooks A., Portis A.R.J., Sharkey T.D. Effects of irradiance and methyl viologen treatment on ATP ADP, and activation of ribulose bisphosphate carboxylase in spinach leaves. Plant Physiology 1988, 88:850-853.
5. 3 species: temperature dependence of parameters of a biochemical photosynthesis model. Photosynthesis Research 2000, 63:59-67.
6. Bunce J.A. Use of the response of photosynthesis to oxygen to estimate mesophyll conductance to carbon dioxide in water-stressed soybean leaves. Plant Cell and Environment 2009, 32:875-881.
7. 2 responses of leaf and canopy photosynthesis: a clarification using the non-rectangular hyperbola model of photosynthesis. Annals of Botany 1998, 14:729-739.
8. 2 partial pressure in sweet potato. Plant Physiology 2005, 139:979-990.
9. 2 on net photosynthesis: biochemical mechanisms models and genomics. Field Crops Research 2004, 90:75-85.
10. Dreyer E., Le Roux X., Montpied P., Daudet F.A., Masson F. Temperature response of leaf photosynthetic capacity in seedlings from seven temperate tree species. Tree Physiology 2001, 21:223-232.
11. Dubois J.-J.B., Fiscus E.L., Booker F.L., Flowers M.D., Reid C.D. Optimizing the statistical estimation of the parameters of the Farquhar-von Caemmerer-Berry model of photosynthesis. New Phytology 2007, 176:402-414.
12. Farquhar G.D., von Caemmerer S. Modelling of photosynthetic response to environmental conditions. Physiological Plant Ecology. II. Water Relations and Carbon Assimilation 1982, 549-588. Springer, Berlin. O.L. Lange, P.S. Nobel, C.B. Osmond, H. Ziegler (Eds.).
13. 3 species. Planta 1980, 149:78-90.
14. Farquhar G.D., Wong S.C. An empirical model of stomatal conductance. Functional Plant Biology 1984, 11:191-210.
15. 2: current knowledge and future prospects. Plant and Cell Environment 2008, 31:602-621.
16. 2. Plant Physiology 1992, 98:1429-1436.
17. 2. Plant and Cell Environment 1992, 15:271-282.
18. Heschel M.S., Stinchcombe J., Holsinger K., Schmitt J. Natural selection on light response curve parameters in the herbaceous annual, Impatiens capensis. Oecologia 2004, 139:487-494.
19. 2O gas exchange of several temperate deciduous broad-leaved trees at the leaf scale considering seasonal changes. Plant and Cell Environment 2003, 26:285-301.
20. Leuning R. Temperature dependence of two parameters in a photosynthesis model. Plant Cell and Environment 2002, 25:1205-1210.
21. Leverenz J.W., Falk S., Pilström C.-M., Samuelsson G. The effects of photoinhibition on the photosynthetic light-response curve of green plant cells (Chlamydomonas reinhardtii). Planta 1990, 182:161-168.
22. Lin S., Guan B., Chang T. Fitting photosynthesis irradiance response curves with nonlinear mixed-effects models. Taiwan Journal of Science 2008, 23:55-69.
23. Long S.P., Bernacchi C.J. Gas exchange measurements, what can they tell us about the underlying limitations to photosynthesis? Procedures and sources of error. Journal of Experimental Botany 2003, 54:2393-2401.
24. i curve analysis across a range of woody plant species: influence of regression analysis parameters and mesophyll conductance. Journal of Experimental Botany 2004, 55:2581-2588.
25. McElrone A.J., Forseth I.N. Photosynthetic responses of a temperate liana to xylella fastidiosa infection and water stress. Journal of Phytopathology 2004, 152:9-20.
26. Medlyn B.E., Dreyer E., Ellsworth D., Forstreuter M., Harley P.C., Kirschbaum M.U.F., Le Roux X., Montpied P., Strassemeyer J., Walcroft A., Wang K., Loustau D. Temperature response of parameters of a biochemically based model of photosynthesis. II. A review of experimental data. Plant Cell and Environment 2002, 25:1167-1179.
27. Medlyn B.E., Loustau D., Delzon S. Temperature response of parameters of a biochemically based model of photosynthesis. I. Seasonal changes in mature maritime pine (Pinus pinaster Ait.). Plant Cell and Environment 2002, 25:1155-1165.
28. c curve fitting methods in determining maximum ribulose 1,5-bisphosphate carboxylase/oxygenase carboxylation rate potential light saturated electron transport rate and leaf dark respiration. Plant Cell and Environment 2009, 32:109-122.
29. 2O gas exchange model LEAFC3 parameterised and tested for winter wheat (Triticum aestivum L.). Ecological Modelling 2005, 183:183-210.
30. 2 partial pressure and leaf inversion. Planta 1993, 189:182-190.
31. 2 response of photosynthesis in Polygonum cuspidatum. Journal of Experimental Botany 2005, 56:755-763.
32. 2 in greenhouses-short communication. Horticultural Science 2011, 38:43-47.
33. Peek M.S., Russek-Cohen E., Wait D.A., Forseth I.N. Physiological response curve analysis using nonlinear mixed models. Oecologia 2002, 132:175-180.
34. 2: methodology, potential errors, and recommendations. Journal of Experimental Botany 2009, 60:2217-2234.
35. Poorter H., Evans J.R. Photosynthetic nitrogen-use efficiency of species that differ inherently in specific leaf area. Oecologia 1998, 116:26-37.
36. Potvin C., Lechowicz M.J., Tardif S. The statistical analysis of ecophysiological response curves obtained from experiments involving repeated measures. Ecology 1990, 71:1389-1400.
37. 3 annuals Chenopodium album L. and Phaseolus vulgaris L. Plant Physiology 1990, 94:1735-1742.
38. 2 response of Ribulose-1,5-Bisphosphate carboxylase/oxygenase activation in Arabidopsis leaves. Plant Physiology 1986, 80:655-659.
39. 3 leaves. Plant Cell and Environment 2007, 30:1035-1040.
40. 2 concentration. Plant Physiology 1984, 75:82-86.
41. Von Caemmerer S. Biochemical Models of Leaf Photosynthesis 2000, CISIRO Publishing, Collingwood, Victoria, Australia.
42. Von Caemmerer S., Edmondson D.L. Relationship between steady-state gas exchange in vivo Ribulose bisphosphate carboxylase activity and some carbon reduction cycle intermediates in Raphanus sativus. Functional Plant Biology 1986, 13:669-688.
43. Von Caemmerer S., Farquhar G.D. Some relationships between the biochemistry of photosynthesis and the gas exchange of leaves. Planta 1981, 153:376-387.
44. 2: results from two independent approaches. Journal of Experimental Botany 2006, 57:3057-3067.
45. i curves from 109 species. Journal of Experimental Botany 1993, 44:907-920.
46. 2 assimilation rate in tobacco leaves. Plant and Cell Environment 2010, 33:332-343.
47. 3 plants by analysis of combined gas exchange and chlorophyll fluorescence measurements. Plant and Cell Environment 2009, 32:1513-1524.