Ribosome engineering to promote new crystal forms

Acta Crystallographica Section D: Biological Crystallography

Volumn 68, Issue 5, 2012, Pages 578-583

  Selmer, Maria ^a,b   Gao, Yong Gui ^b,c   Weixlbaumer, Albert ^b,d   Ramakrishnan, V ^b  

^a UPPSALA UNIVERSITY   (Sweden)

^b MRC LABORATORY OF MOLECULAR BIOLOGY   (United Kingdom)

^c NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

^d ROCKEFELLER UNIVERSITY   (United States)

Author keywords

engineering; GTPase; ribosome

Indexed keywords

BACTERIAL PROTEIN; ELONGATION FACTOR G; FUSIDIC ACID; GUANOSINE DIPHOSPHATE; RIBOSOMAL PROTEIN L9; RIBOSOME PROTEIN;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; GENETICS; HOMOLOGOUS RECOMBINATION; LARGE RIBOSOMAL SUBUNIT; METABOLISM; MUTATION; THERMUS THERMOPHILUS; X RAY CRYSTALLOGRAPHY;

BACTERIAL PROTEINS; CRYSTALLOGRAPHY, X-RAY; FUSIDIC ACID; GUANOSINE DIPHOSPHATE; HOMOLOGOUS RECOMBINATION; MODELS, MOLECULAR; MUTATION; PEPTIDE ELONGATION FACTOR G; RIBOSOMAL PROTEINS; RIBOSOME SUBUNITS, LARGE, BACTERIAL; THERMUS THERMOPHILUS;

THERMUS THERMOPHILUS;

EID: 84860302001     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444912006348     Document Type: Article

References (29)

1. Atkins, J. F. & Björk, G. R. (2009). Microbiol. Mol. Biol. Rev. 73, 178-210.
2. Ban, N., Nissen, P., Hansen, J., Moore, P. B. & Steitz, T. A. (2000). Science, 289, 905-920.
3. Cameron, D. M., Gregory, S. T., Thompson, J., Suh, M. J., Limbach, P. A. & Dahlberg, A. E. (2004). J. Bacteriol. 186, 5819-5825.
4. Connell, S. R., Takemoto, C., Wilson, D. N., Wang, H., Murayama, K., Terada, T., Shirouzu, M., Rost, M., Schüler, M., Giesebrecht, J., Dabrowski, M., Mielke, T., Fucini, P., Yokoyama, S. & Spahn, C. M. (2007). Mol. Cell, 25, 751-764.
5. Gao, H., Zhou, Z., Rawat, U., Huang, C., Bouakaz, L.,Wang, C., Cheng, Z., Liu, Y., Zavialov, A., Gursky, R., Sanyal, S., Ehrenberg, M., Frank, J. & Song, H. (2007). Cell, 129, 929-941.
6. Gao, Y.-G., Selmer, M., Dunham, C. M., Weixlbaumer, A., Kelley, A. C. & Ramakrishnan, V. (2009). Science, 326, 694-699.
7. Hansen, J. L., Schmeing, T. M., Moore, P. B. & Steitz, T. A. (2002). Proc. Natl Acad. Sci. USA, 99, 11670-11675.
8. Hashimoto, Y., Yano, T., Kuramitsu, S. & Kagamiyama, H. (2001). FEBS Lett. 506, 231-234.
9. Herr, A. J., Nelson, C. C.,Wills, N. M., Gesteland, R. F. & Atkins, J. F. (2001). J. Mol. Biol. 309, 1029-1048.
10. Hoffman, D.W., Davies, C., Gerchman, S. E., Kycia, J. H., Porter, S. J., White, S. W. & Ramakrishnan, V. (1994). EMBO J. 13, 205-212.
11. Hoseki, J., Yano, T., Koyama, Y., Kuramitsu, S. & Kagamiyama, H. (1999). J. Biochem. 126, 951-956.
12. Jenner, L., Romby, P., Rees, B., Schulze-Briese, C., Springer, M., Ehresmann, C., Ehresmann, B., Moras, D., Yusupova, G. & Yusupov, M. (2005). Science, 308, 120-123.
13. Jin, H., Kelley, A. C. & Ramakrishnan, V. (2011). Proc. Natl Acad. Sci. USA, 108, 15798-15803.
14. Koyama, Y., Hoshino, T., Tomizuka, N. & Furukawa, K. (1986). J. Bacteriol. 166, 338-340.
15. Lieberman, K. R., Firpo, M. A., Herr, A. J., Nguyenle, T., Atkins, J. F., Gesteland, R. F. & Noller, H. F. (2000). J. Mol. Biol. 297, 1129-1143.
16. Myasnikov, A. G., Marzi, S., Simonetti, A., Giuliodori, A. M., Gualerzi, C. O., Yusupova, G., Yusupov, M. & Klaholz, B. P. (2005). Nature Struct. Mol. Biol. 12, 1145-1149.
17. Ogle, J. M., Brodersen, D. E., Clemons, W. M. Jr, Tarry, M. J., Carter, A. P. & Ramakrishnan, V. (2001). Science, 292, 897-902.
18. Petry, S., Brodersen, D. E., Murphy, F. V., Dunham, C. M., Selmer, M., Tarry, M. J., Kelley, A. C. & Ramakrishnan, V. (2005). Cell, 123, 1255-1266.
19. Schmeing, T. M., Voorhees, R. M., Kelley, A. C., Gao, Y.-G., Murphy, F. V. IV, Weir, J. R. & Ramakrishnan, V. (2009). Science, 326, 688-694.
20. Schuette, J. C., Murphy, F. V., Kelley, A. C.,Weir, J. R., Giesebrecht, J., Connell, S. R., Loerke, J., Mielke, T., Zhang, W., Penczek, P. A., Ramakrishnan, V. & Spahn, C. M. (2009). EMBO J. 28, 755-765.
21. Schuwirth, B. S., Borovinskaya, M. A., Hau, C. W., Zhang, W., Vila-Sanjurjo, A., Holton, J. M. & Cate, J. H. (2005). Science, 310, 827-834.
22. Selmer, M., Dunham, C. M.,Murphy, F. V.,Weixlbaumer, A., Petry, S., Kelley, A. C., Weir, J. R. & Ramakrishnan, V. (2006). Science, 313, 1935-1942.
23. Spahn, C. M., Blaha, G., Agrawal, R. K., Penczek, P., Grassucci, R. A., Trieber, C. A., Connell, S. R., Taylor, D. E., Nierhaus, K. H. & Frank, J. (2001). Mol. Cell, 7, 1037-1045.
24. Stock, D., Perisic, O. & Löwe, J. (2005). Prog. Biophys. Mol. Biol. 88, 311-327.
25. Villa, E., Sengupta, J., Trabuco, L. G., LeBarron, J., Baxter, W. T., Shaikh, T. R., Grassucci, R. A., Nissen, P., Ehrenberg, M., Schulten, K. & Frank, J. (2009). Proc. Natl Acad. Sci. USA, 106, 1063-1068.
26. Voorhees, R. M., Schmeing, T. M., Kelley, A. C. & Ramakrishnan, V. (2010). Science, 330, 835-838.
27. Wimberly, B. T., Brodersen, D. E., Clemons, W. M., Morgan-Warren, R. J., Carter, A. P., Vonrhein, C., Hartsch, T. & Ramakrishnan, V. (2000). Nature (London), 407, 327-339.
28. Winn, M. D. et al. (2011). Acta Cryst. D67, 235-242.
29. Yusupov, M. M., Yusupova, G. Z., Baucom, A., Lieberman, K., Earnest, T. N., Cate, J. H. & Noller, H. F. (2001). Science, 292, 883-896.