Completion of autobuilt protein models using a database of protein fragments

Acta Crystallographica Section D: Biological Crystallography

Volumn 68, Issue 4, 2012, Pages 328-335

  Cowtan, Kevin ^a  

^a UNIVERSITY OF YORK   (United Kingdom)

Author keywords

Buccaneer building, refinement and validation; databases; model building

Indexed keywords

PEPTIDE FRAGMENT;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER PROGRAM; PROTEIN DATABASE; PROTEIN TERTIARY STRUCTURE; X RAY CRYSTALLOGRAPHY;

CRYSTALLOGRAPHY, X-RAY; DATABASES, PROTEIN; MODELS, MOLECULAR; PEPTIDE FRAGMENTS; PROTEIN STRUCTURE, TERTIARY; SOFTWARE;

EID: 84860285553     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444911039655     Document Type: Article

References (16)

1. Choi, Y. & Deane, C. M. (2010). Proteins, 78, 1431-1440.
2. Cohen, S. X., Morris, R. J., Fernandez, F. J., Ben Jelloul, M., Kakaris, M., Parthasarathy, V., Lamzin, V. S., Kleywegt, G. J. & Perrakis, A. (2004). Acta Cryst. D60, 2222-2229.
3. Cowtan, K. (2006). Acta Cryst. D62, 1002-1011.
4. Cowtan, K. (2008). Acta Cryst. D64, 83-89.
5. Cowtan, K. (2010). Acta Cryst. D66, 470-478.
6. Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. (2010). Acta Cryst. D66, 486-501.
7. Esnouf, R. M. (1997). Acta Cryst. D53, 665-672.
8. Joint Center for Structural Genomics (2006). JCSG Data Archive. http://www.jcsg.org/datasets-info.shtml.
9. Jones, T. A. & Thirup, S. (1986). EMBO J. 5, 819-822.
10. Joosten, K., Cohen, S. X., Emsley, P., Mooij, W., Lamzin, V. S. & Perrakis, A. (2008). Acta Cryst. D64, 416-424.
11. Kleywegt, G. J. & Jones, T. A. (1996). Acta Cryst. D52, 829-832.
12. Lovell, S. C., Davis, I. W., Arendall, W. B., de Bakker, P. I., Word, J. M., Prisant, M. G., Richardson, J. S. & Richardson, D. C. (2003). Proteins, 50, 437-450.
13. Murshudov, G. N., Skubák, P., Lebedev, A. A., Pannu, N. S., Steiner, R. A., Nicholls, R. A., Winn, M. D., Long, F. & Vagin, A. A. (2011). Acta Cryst. D67, 355-367.
14. Payne, P. W. (1993). Protein Sci. 2, 315-324.
15. Sheldrick, G. M. (2010). Acta Cryst. D66, 479-485.
16. Terwilliger, T. C. (2003). Acta Cryst. D59, 38-44.