Tropicibacter phthalicus sp. nov., a phthalate-degrading bacterium from seawater

Current Microbiology

Volumn 64, Issue 4, 2012, Pages 392-396

  Iwaki, Hiroaki ^a   Nishimura, Ayaka ^a   Hasegawa, Yoshie ^a  

^a KANSAI UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; CHLORAMPHENICOL; CYTOSINE; FATTY ACID; GENOMIC DNA; GENTAMICIN; GUANINE; KANAMYCIN; LINCOMYCIN; NALIDIXIC ACID; NOVOBIOCIN; PENICILLIN G; PHTHALIC ACID; PHTHALIC ACID DIMETHYL ESTER; POLYMYXIN B; RNA 16S; SEA WATER; SODIUM CHLORIDE; STREPTOMYCIN; TETRACYCLINE; UBIDECARENONE;

AEROBIC BACTERIUM; ALPHAPROTEOBACTERIA; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL CELL; BACTERIAL FLAGELLUM; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; DEGRADATION KINETICS; DNA CONTENT; GENUS; GRAM NEGATIVE BACTERIUM; JAPAN; LIPID COMPOSITION; MARINE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; RHODOBACTERACEAE; SEASHORE; SEQUENCE ANALYSIS; TEMPERATURE; TROPICIBACTER PHTHALICUS;

AEROBIOSIS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FLAGELLA; HYDROGEN-ION CONCENTRATION; JAPAN; LOCOMOTION; MOLECULAR SEQUENCE DATA; PHTHALIC ACIDS; PHYLOGENY; QUINONES; RHODOBACTERACEAE; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; TEMPERATURE;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); NEGIBACTERIA; RHODOBACTERACEAE;

EID: 84860259648     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-012-0085-8     Document Type: Article

References (16)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
2. Barrow GI, Feltham RKA (1993) Cowan and Steel's manual for the identification of medical bacteria, 3rd edn. Cambridge University Press, Cambridge
3. Buchan A, Gonzalez JM, Moran MA (2005) Overview of the marine Roseobacter lineage. Appl Environ Microbiol 71:5665-5667
4. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376 (Pubitemid 11016207)
5. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
6. Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20: 406-416
7. Harwati TU, Kasai Y, Kodama Y, Susilaningsih D, Watanabe K (2009) Tropicibacter naphthalsenivorans gen. nov., sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from Semarang Port in Indonesia. Int J Syst Evol Microbiol 59: 392-396
8. Iwaki H, Nishimura A, Hasegawa Y (2011) Isolation and characterization of marine bacteria capable of utilizing phthalate. World J Microbiol Biotechnol. doi:10.1007/s11274-011-0925-x
9. Katayama-Fujimura Y, Komatsu Y, Kuraishi H, Kaneko T (1984) Estimation of DNA base composition by high performance liquid chromatography of its nuclease P1 hydrolysate. Agric Biol Chem 48:3169-3172
10. KimuraM(1980)Asimple method of estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
11. Lechner U, Baumbach R, Becker D, Kitunen V, Auling G, Salkinoja-Salonen M (1995) Degradation of 4-chloro-2-methylphenol by an activated sludge isolate and its taxonomic description. Biodegradation 6:83-92
12. Nishijima M, Araki-Sakai M, Sano H (1997) Identification of isoprenoid quinones by frit-FAB liquid chromatography-mass spectrometry for the chemotaxonomy of microorganisms. J Microbiol Met 28:113-122 (Pubitemid 27219551)
13. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425
14. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
15. Tittsler RP, Sandholzer LA (1936) The use of semi-solid agar for the detection of bacterial motility. J Bacteriol 31:575-580
16. Yokota A, Akagawa-Matsushita M, Hiraishi A, Katayama Y, Urakami T, Yamasato K (1992) Distribution of quinone systems in microorganisms: gram-negative eubacteria. Bull Jpn Fed Cult Coll 8:136-171