Salt stress induced proteome and transcriptome changes in sugar beet monosomic addition line M14

Journal of Plant Physiology

Volumn 169, Issue 9, 2012, Pages 839-850

  Yang, Le ^a   Ma, Chunquan ^a   Wang, Linlin ^a   Chen, Sixue ^a,b   Li, Haiying ^a  

^a HEILONGJIANG UNIVERSITY   (China)

^b UNIVERSITY OF FLORIDA   (United States)

Author keywords

Proteomics; Salt tolerance; Sugar beet monosomic addition line M14 (M14); Suppression subtractive hybridization (SSH); Two dimensional difference gel electrophoresis (2D DIGE)

Indexed keywords

PROTEOME; SODIUM CHLORIDE; TRANSCRIPTOME; VEGETABLE PROTEIN;

ARTICLE; BEET; CHEMISTRY; DRUG EFFECT; ENVIRONMENTAL EXPOSURE; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MONOSOMY; PHYSIOLOGICAL STRESS; PLANT GENE; PLANT LEAF; PLANT ROOT; SALINITY; SALT TOLERANCE;

BETA VULGARIS; ENVIRONMENTAL EXPOSURE; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; MONOSOMY; PLANT LEAVES; PLANT PROTEINS; PLANT ROOTS; PROTEOME; SALINITY; SALT-TOLERANCE; SODIUM CHLORIDE; STRESS, PHYSIOLOGICAL; TRANSCRIPTOME;

BETA VULGARIS SUBSP. VULGARIS;

EID: 84860258328     PISSN: 01761617     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jplph.2012.01.023     Document Type: Article

References (55)

1. Aghaei K., Ehsanpour A.A., Komatsu S. Proteome analysis of potato under salt stress. J Proteome Res 2008, 7:4858-4868.
2. Arosio P., Levi S. Ferritin, iron homeostasis, and oxidative damage. Free Radic Biol Med 2002, 33:457-463.
3. Askari H., Edqvist J., Hajheidari M., Kafi M., Salekdeh G.H. Effects of salinity levels on proteome of Suaeda aegyptiaca leaves. Proteomics 2006, 6:2542-2554.
4. Barceló-Batllori S., Kalko S.G., Esteban Y., Moreno S., Carmona M.C., Gomis R. Integration of DIGE and bioinformatics analyses reveals a role of the antiobesity agent tungstate in redox and energy homeostasis pathways in brown adipose tissue. Mol Cell Proteomics 2008, 7:378-393.
5. Chen F., Li Q., Sun L., He Z. The rice 14-3-3 gene family and its involvement in responses to biotic and abiotic stress. DNA Res 2006, 13:53-63.
6. Chen S. Rapid protein identification using direct infusion nanoelectrospray ionization mass spectrometry. Proteomics 2006, 6:16-25.
7. Craig E.A. Chaperones: helpers along the pathways to protein folding. Science 1993, 260:1902-1903.
8. Du C.X., Fan H.F., Guo S.R., Tezuka T., Li J. Proteomic analysis of cucumber seedling roots subjected to salt stress. Phytochemistry 2010, 71:1450-1459.
9. Duthie S.J., Narayanan S., Brand G.M., Grant G. DNA stability and genomic methylation status in colonocytes isolated from methy1-donor-deficient rats. Eur J Nutr 2000, 39:106-111.
10. Espartero J., Pintor-Toro J.A., Pardo J.M. Differential accumulation of S-adenosylmethionine synthetase transcripts in response to salt stress. Plant Mol Biol 1994, 25:217-227.
11. Ge Y., He G., Wang Z., Guo D., Qin R., Li R. GISH and BAC-FISH study of apomictic Beta M14. Sci China C Life Sci 2007, 37:209-216.
12. Ghoulam C., Foursy A., Fares K. Effects of salt stress on growth, inorganic ions and proline accumulation in relation to osmotic adjustment in five sugar beet cultivars. Environ Exp Bot 2002, 47:39-50.
13. Guo D.D., Kang C.H., Liu L.P., Li Y. Study of apomixis in the allotriploid beet (VVC). Agric Sci Chin 1999, 32:1-5.
14. Hamilton E.W., Heckathorn S.A. Mitochondrial adaptations to NaCl. Complex I is protected by anti-oxidants and small heat shock proteins, whereas complex II is protected by proline and betaine. Plant Physiol 2001, 126:1266-1274.
15. Hatzimanikatis V., Choe L.H., Lee K.H. Proteomics: theoretical and experimental considerations. Biotechnol Prog 1999, 15:312-318.
16. Heby O., Persson L. Molecular genetics of polyamine synthesis in eukaryotic cells. Trends Biochem Sci 1990, 15:153-158.
17. Henkes S., Sonnewald U., Badur R., Flachmann R., Stitt M. A small decrease of plastid transketolase activity in antisense tobacco transformants has dramatic effects on photosynthesis and phenylpropanoid metabolism. Plant Cell 2001, 13:535-551.
18. Horie T., Schroeder J.I. Sodium transporters in plants. Diverse genes and physiological functions. Plant Physiol 2004, 136:2457-2462.
19. Ivashuta S., Imaib R., Uchiyamab K., Gaub M., Shimamotoa Y. Changes in chloroplast FtsH-like gene during cold acclimation in alfalfa (Medicago sativa). J Plant Physiol 2002, 159:85-90.
20. Jiang Y., Yang B., Harris N.S., Deyholos M.K. Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots. J Exp Bot 2007, 58:3591-3607.
21. Katori T., Ikeda A., Iuchi S., Kobayashi M., Shinozaki K., Maehashi K., et al. Dissecting the genetic control of natural variation in salt tolerance of Arabidopsis thaliana accessions. J Exp Bot 2010, 61:1125-1138.
22. Kim D.W., Rakwal R., Agrawal G.K., Jung Y.H., Shibato J., Jwa N.S., et al. A hydroponic rice seedling culture model system for investigating proteome of salt stress in rice leaf. Electrophoresis 2005, 26:4521-4539.
23. Kreps J.A., Wu Y., Chang H.S., Zhu T., Wang X., Harper J.F. Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress. Plant Physiol 2002, 130:2129-2141.
24. Langer T. AAA proteases: cellular machines for degrading membrane proteins. Trends Biochem Sci 2000, 25:247-251.
25. Li H., Cao H., Wang Y., Pang Q., Ma C., Chen S. Proteomic analysis of sugar beet apomictic monosomic addition line M14. J Proteomics 2009, 73:297-308.
26. Martino C.D., Delfine S., Pizzuto R., Loreto F., Fuggi A. Free amino acids and glycine betaine in leaf osmoregulation of spinach responding to increasing salt stress. New Phytol 2003, 158:455-463.
27. 2+-dependent protein kinase CPK3 is required for MAPK-independent salt-stress acclimation in Arabidopsis. Plant J 2010, 63:484-498.
28. Munns R., Husain S., Rivelli A.R., James R.A., Condon A.G., Lindsay M.P., et al. Avenues for increasing salt tolerance of crops, and the role of physiologically based selection traits. Plant Soil 2002, 247:93-105.
29. Nohzadeh M.S., Habibi R.M., Heidari M., Salekdeh G.H. Proteomics reveals new salt responsive proteins associated with rice plasma membrane. Biosci Biotechnol Biochem 2007, 71:2144-2154.
30. Park E.J., Jeknic Z., Chen T.H. Exogenous application of glycinebetaine increases chilling tolerance in tomato plants. Plant Cell Physiol 2006, 47:706-714.
31. Portis A.R. RuBisCO activase-RuBisCO's catalytic chaperone. Photosynth Res 2003, 75:11-27.
32. Ranjan P., Kao Y.Y., Jiang H., Joshi C.P., Harding S.A., Tsai C.J. Suppression subtractive hybridization-mediated transcriptome analysis from multiple tissues of aspen (Populus tremuloides) altered in phenylpropanoid metabolism. Planta 2004, 219:694-704.
33. Rivera J., Megias D., Bravo J. Proteomics-based strategy to delineate the molecular mechanisms of the metastasis suppressor gene BRMS1. J Proteome Res 2007, 6:4006-4018.
34. Roxas V.P., Smith R.K., Allen E.R., Allen R.D. Overexpression of glutathione S-transferase/glutathione peroxidase enhances the growth of transgenic tobacco seedlings during stress. Nat Biotechnol 1997, 15:988-991.
35. Sairam R.K., Rao K.V., Srivastava G.C. Differential response of wheat genotypes to long term salinity stress in relation to oxidative stress, antioxidant activity and osmolyte concentration. Plant Sci 2002, 163:1037-1046.
36. Sánchez-Aguayo I., Rodríguez-Galán J.M., García R., Torreblanca J., Pardo J.M. Salt stress enhances xylem development and expression of S-adenosyl-l-methionine synthase in lignifying tissues of tomato plants. Planta 2004, 220:278-285.
37. Seki M., Narusaka M., Ishida J., Nanjo T., Fujita M., Oono Y., et al. Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J 2002, 31:279-292.
38. Shevchenko A., Wilm M., Vorm O., Mann M. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal Chem 1996, 68:850-858.
39. + antiporter gene improves salt tolerance in Arabidopsis thaliana. Nat Biotechnol 2002, 21:81-85.
40. Sivakumar P., Sharmila P., Pardha Saradhi P. Proline alleviates salt-stress-induced enhancement in ribulose-1,5-bisphosphate oxygenase activity. Biochem Biophys Res Commun 2000, 279:512-515.
41. Sobahan M.A., Arias C.R., Okuma E., Shimoishi Y., Nakamura Y., Hirai Y., et al. Exogenous glycinebetaine accumulation and increased salt-tolerance in rice seedlings. Biosci Biotechnol Biochem 1996, 60:366-368.
42. Sobhanian H., Motamed N., Jazii F.R., Nakamura T., Komatsu S. Salt stress induced differential proteome and metabolome response in the shoots of Aeluropus lagopoides (Poaceae), a halophyte C4 plant. J Proteome Res 2010, 9:2882-2897.
43. Tabor C.W., Tabor H. Methionine adenosyltransferase (S-adenosylmethionine synthetase) and S-adenosylmethionine decarboxylase. Adv Enzymol Relat Areas Mol Biol 1984, 56:251-282.
44. Tabuchi T., Kawaguchi Y., Azuma T., Nanmori T., Yasuda T. Similar regulation patterns of choline monooxygenase, phosphoethanolamine N-methyltransferase and S-adenosyl-l-methionine synthetase in leaves of the halophyte Atriplex nummularia L. Plant Cell Physiol 2005, 46:505-513.
45. Taji T., Seki M., Satou M., Sakurai T., Kobayashi M., Ishiyama K., et al. Comparative genomics in salt tolerance between Arabidopsis and Arabidopsis-related halophyte salt cress using Arabidopsis microarray. Plant Physiol 2004, 135:1697-1709.
46. Tannu N.S., Hemby S.E. Two-dimensional fluorescence difference gel electrophoresis for comparative proteomics profiling. Nat Protoc 2006, 1:1732-1742.
47. Turan M.A., Elkarim A.H.A., Taban N., Taban S. Effect of salt stress on growth, stomatal resistance, proline and chlorophyll concentrations on maize plant. Afr J Agric Res 2009, 4:893-897.
48. Wakeel A., Asif A.R., Pitann B., Schubert S. Proteome analysis of sugar beet (Beta vulgaris L.) elucidates constitutive adaptation during the first phase of salt stress. J Plant Physiol 2011, 168:519-526.
49. Wang X., Fan P., Song H., Chen X., Li X., Li Y. Comparative proteomic analysis of differentially expressed proteins in shoots of Salicornia europaea under different salinity. J Proteome Res 2009, 8:3331-3345.
50. Wang Y., Li H., Chen S. Advances in quantitative proteomics. Front Biol 2010, 5:195-203.
51. Weretilnyk E.A., Hanson A.D. Molecular cloning of a plant betaine-aldehyde dehydrogenase, an enzyme implicated in adaptation to salinity and drought. Proc Natl Acad Sci U S A 1990, 87:2745-2749.
52. Woodson W.R., Park K.Y., Drory A., Larsen P.B., Wang H. Expression of ethylene biosynthetic pathway transcripts in senescing carnation flowers. Plant Physiol 1992, 99:526-532.
53. Yan S., Tang Z., Su W., Sun W. Proteomic analysis of salt stress-responsive proteins in rice root. Proteomics 2005, 5:235-244.
54. Zhang Y., Lai J., Sun S., Li Y., Liu Y., Liang L., et al. Comparison analysis of transcripts from the halophyte Thellungiella halophila. J Integr Plant Biol 2008, 50:1327-1335.
55. Zörb C., Herbst R., Forreiter C., Schubert S. Short-term effects of salt exposure on the maize chloroplast protein pattern. Proteomics 2009, 9:4209-4220.