Integrating GIS and phylogenetic biogeography to assess species-level biogeographic patterns: A case study of late Devonian Faunal dynamics

Palaeogeography and Palaeobiogeography: Biodiversity in Space and Time

Volumn , Issue , 2011, Pages 115-142

  Stigall, Alycia L ^a  

^a OHIO UNIVERSITY   (United States)

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EID: 84860244120     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter

References (111)

1. Adrain, J.M., Edgecombe, G.D., and Lieberman, B.S. (2001) Paleobiology; An empirical historical science. In Speciation in the Fossil Record (eds. J.M. Adrain, G.D. Edgecombe, and B.S. Lieberman), Kluwer Academic Press, New York, pp. 1-6.
2. Bambach, R.K. and Knoll, A.H. (2001) Is there a separate class of “mass” extinctions? Geological Society of America, Abstracts with Programs, 109: A141.
3. Bambach, R.K., Knoll, A.H., and Sepkoski, J.J., Jr. (2002) Anatomical and ecological constraints on Phanerozoic animal diversity in the marine realm. Proceedings of the National Academy of Sciences, 99: 6854-6859.
4. Beaumont, C., Hamilton, J., and Quinlan, G. (1988) Orogeny and stratigraphy; Numerical models of the Paleozoic in Eastern Interior of North America. Tectonics, 7: 389-416.
5. Benton, R.C., Evanoff, E., Herbel, C.L., and Terry, D.O.J. (2001) Baseline mapping of fossil bone beds at Badlands National Park. Technical Report - National Park Service, Geological Resource Division, 85-94.
6. Berry, J.K. (1995) Spatial Reasoning for Effective GIS, GIS World, Fort Collins, CO.
7. Boucot, A.J. (1975) Evolution and Extinction Rate Controls, Elsevier, Amsterdam.
8. Boucot, A.J., Johnson, J.G., and Talent, J.A. (1969) Early Devonian brachiopod zoogeography. Geological Society of America, Special Paper, 119: 1-113.
9. Brooks, D.R. and Folinsbee, K.E. (2012) Phylogenetic methods in paleobiogeography: Changing from simplicity to complexity without losing parsimony. In Palaeogeography and Palaeobiogeography: Biodiversity in Space and Time (eds. P. Upchurch, A.J. McGowan, and C.S.C. Slater), CRC Press, Boca Raton, FL, pp. 13-38.
10. Brooks, D.R. and McLennan, D.A. (1991) Phylogeny, Ecology, and Behavior, University of Chicago Press, Chicago.
11. Brooks, D.R. and McLennan, D.A. (2002) The Nature of Diversity: An Evolutionary Voyage of Discovery, University of Chicago Press, Chicago.
12. Brooks, D.R., van Veller, M.G.P., and McLennan, D.A. (2001) How to do BPA, really. Journal of Biogeography. 28: 345-358.
13. Burrough, P.A. and McDonnell, R.A. (1998) Principles of Geographic Information Systems, Oxford University Press, Oxford.
14. Chou, Y.H. (1997) Exploring Spatial Analysis in Geographic Information Systems, OnWord Press, Santa Fe, NM.
15. Cowie, R.H. and Holland, B.S. (2006) Dispersal is fundamental to biogeography and the evolution of biodiversity on oceanic islands. Journal of Biogeography, 33: 193-198.
16. Dalziel, I.W.D., Dalla Salda, L.H., and Gahagan, L.M. (1994) Paleozoic Laurentia-Gondwana interaction and the origin of the Appalachian-Andean mountain system. Geological Society of America Bulletin, 106: 243-252.
17. Dawson, M.N. (2005) Incipient speciation of Catostylus mosaicus (Scyphozoa, Rhizostomeae, Catostylidae), comparative phylogeography and biogeography in south-east Australia. Journal of Biogeography, 32: 515-533.
18. Dineley, D.L. (1984) Aspects of a Stratigraphic System; The Devonian. John Wiley & Sons, New York.
19. Droser, M.L., Bottjer, D.J., McGhee, G.R., Jr., and Sheehan, P.M. (2000) Decoupling of taxonomic and ecologic severity of Phanerozoic marine mass extinctions. Geology, 28: 675-678.
20. Dudei, N.L., and Stigall, A.L. (2010) An ecological niche modeling approach to assess biogeographic response of brachiopod species during the Richmondian (Late Ordovician) Invasion in the Cincinnati Arch. Palaeogeography, Palaeoclimatology, Palaeoecology, 296: 28-47.
21. Engler, R., Guisan, A., and Rechsteiner, L. (2004) An improved approach for predicting the distribution of rare and endangered species from occurrence and pseudo-absence data. Journal of Applied Ecology, 41: 263-274.
22. Enserink, M. (1999) Biological invaders sweep in. Science, 285: 1834-1836.
23. Environmental Systems Research Institute (2006) ArcGIS 9.2.
24. Ettensohn, F.R. (1985) The Catskill Delta complex and the Acadian Orogeny; A model. In The Catskill Delta (eds. D.L. Woodrow and W.D. Sevon), Geological Society of America, Boulder, CO, pp. 39-49.
25. Feist, R. (1991) The Late Devonian trilobite crises. Historical Biology, 5: 197-214.
26. Ferguson, C.A., Bodenbender, B.E., Hones, J.L., and Ahmed, K. (2001) Recording the fossil record: A GIS database of Middle Devonian fossils in the Michigan Basin. Geological Society of America, Abstracts with Programs, 109: A131.
27. Graham, R.W. (2000) FAUNMAP Database: Filter effects from field to literature to database to analysis to interpretation. Geological Society of America, Abstracts with Programs, 109: A131.
28. Graham, R.W., Anderson, E., Barnosky, A.D., Burns, J.A., Churcher, C.S., Graham, M.A., Grayson, D.K., Guthrie, R.D., Harington, C.R., Jefferson, G.T., Lundelius, E.L., Jr., Martin, L.D., McDonald, H.G., Morlan, R.E., Schroeder, E.K., Semken, H.A., Jr., Toomey, R.S., III, Webb, S.D., Werdelin, L., Wilson, M.C., and Group, F.W. (1996a) Spatial response of mammals to late Quaternary environmental fluctuations. Science, 272: 1601-1606.
29. Graham, R.W., Graham, M.A., Lundelius, E.L., Jr., and Schroeder, E.K. (1996b) FAUNMAP; An electronic database for mapping changes in the distributions of late Quaternary mammals in the United States. Abstracts with Programs - Geological Society of America, 28: 16.
30. Gurevitch, J. and Padilla, D.K. (2004) Are invasive species a major cause of extinction? Trends in Ecology & Evolution, 19: 470-473.
31. Hulbert, R.C., Jr. (1993) Taxonomic evolution in North American Neogene horses (subfamily Equinae); The rise and fall of an adaptive radiation. Paleobiology, 19: 216-234.
32. Jernvall, J., Kerynen, S.V.E., and Thesleff, I. (2000) Quantifying evolutionary modification of development in mammalian molar topography. American Zoologist, 40: 1076-1077.
33. Johnson, C.J., Seip, D.R., and Boyce, M.S. (2004) A quantitative approach to conservation planning: Using resource selection functions to map the distribution of mountain caribou at multiple spatial scales. Journal of Applied Ecology, 41: 238-251.
34. Johnson, J.G., Klapper, G., and Sandberg, C.A. (1985) Devonian eustatic fluctuations in Euramerica. Geological Society of America Bulletin, 96: 567-587.
35. Kalvoda, J. and Walliser, O.H.E. (1990) Late Devonian-Early Carboniferous paleobiogeography of benthic Foraminifera and climatic oscillations. Lecture Notes in Earth Sciences, 30: 183-188.
36. Kaufmann, B. (2006) Calibrating the Devonian time scale: A synthesis of U-Pb ID-TIMS ages and conodont stratigraphy. Earth Science Reviews, 76: 175-190.
37. Kelly, D.W., MacIsaac, H.J., and Heath, D.D. (2006) Vicariance and dispersal effects on phylogeographic structure and speciation in a widespread estuarine invertebrate. Evolution, 60: 257-267.
38. Kidwell, S.M. and Bosence, D.W.J. (1991) Taphonomy and time-averaging of marine shelly faunas. In Taphonomy: Releasing the Data Locked in the Fossil Record (eds. P.A. Allison and D.E.G. Briggs), Plenum, New York, pp. 115-209.
39. Kidwell, S.M. and Flessa, K.W. (1996) The quality of the fossil record: Populations, species, and communities. Annual Review of Earth and Planetary Sciences, 24: 433-464.
40. Kiessling, W., and Aberhan, M. (2007) Geographical distribution and extinction risk: Lessons from Triassic/Jurassic marine benthic organisms. Journal of Biogeography, 34: 1473-1489.
41. Klapper, G. (1995) Preliminary analysis of Frasnian (Late Devonian) conodont biogeography. Historical Biology, 10: 103-117.
42. Klapper, G. and Johnson, J.G. (1980) Endemism and dispersal of Devonian conodonts. Journal of Paleontology, 54: 400-455.
43. Lacruz, R., Berger, L.R., Brink, J.S., Hancox, P.J., and Ungar, P. (2003) Gladysvale; Fossils, strata, and GIS analysis. South African Journal of Science, 99: 283-285.
44. Lees, D.C., Cocks, L.R.M., and Fortey, R.A. (2002) Quantifying paleogeography using biogeography; A test case for the Ordovician and Silurian of Avalonia based on brachiopods and trilobites. Paleobiology, 28: 343-363.
45. Lieberman, B.S. (2000) Paleobiogeography: Using Fossils to Study Global Change, Plate Tectonics, and Evolution, Kluwer Academic/Plenum, New York.
46. Lieberman, B.S. (2001) Analyzing speciation rates in macroevolutionary studies. In Speciation in the Fossil Record (eds. J.M. Adrain, G.D. Edgecombe, and B.S. Lieberman), Kluwer Academic Press, New York, pp. 323-339.
47. Lieberman, B.S. (2002) Phylogenetic biogeography with and without the fossil record; Gauging the effects of extinction and paleontological incompleteness. Palaeogeography, Palaeoclimatology, Palaeoecology, 178: 39-52.
48. Lieberman, B.S. (2003) Paleobiogeography: The relevance of fossils to biogeography. Annual Review of Ecology, Evolution, and Systematics, 34: 51-69.
49. Lieberman, B.S. and Eldredge, N. (1996) Trilobite biogeography in the Middle Devonian; Geological processes and analytical methods. Paleobiology, 22: 66-79.
50. Lomolino, M.V., Riddle, B.R., and Brown, J.H. (2006) Biogeography, 3rd edition, Sinauer, Sunderland, MA.
51. Maguire, K.C., and Stigall, A.L. (2009) Distribution of fossil horses in the Great Plains during the Miocene and Pliocene: An ecological niche modeling approach. Paleobiology, 35: 597-611.
52. Manship, L.L. (2004) Pattern matching: Classification of ammonitic sutures using GIS. Palaeontologica Electronica, 7: 1-15.
53. Markwick, P.J. (2002) Integrating the present and past records of climate, biodiversity, and biogeography; Implications for palaeoecology and palaeoclimatology. In Palaeobiogeography and Biodiversity Change: the Ordovician and Mesozoic-Cenozoic Radiations (eds. J.A. Crame and A.W. Owen), Geological Society of London, London, pp. 179-199.
54. Mayr, E. (1942) Systematics and the Origin of Species. Columbia University Press, New York.
55. McCartney, M.A., Keller, G., and Lessios, H.A. (2000) Dispersal barriers in tropical oceans and speciation in Atlantic and eastern Pacific sea urchins of the genus Echinometra. Molecular Ecology, 9: 1391-1400.
56. McGhee, G.R., Jr. (1981) Evolutionary replacement of ecological equivalents in Late Devonian benthic marine communities. Palaeogeography, Palaeoclimatology, Palaeoecology, 34: 267-283.
57. McGhee, G.R., Jr. (1996) The Late Devonian Mass Extinction; The Frasnian/Famennian Crisis, Columbia University Press, New York.
58. McGhee, G.R., Jr. (2001) The Late Devonian mass extinction. In Palaeobiology II (eds. D.E.G. Briggs and P.R. Crowther), Blackwell Science, Oxford, pp. 222-225.
59. McKerrow, W.S., Ahlberg, P.E., Clayton, G., Cleal, C.J., and Eagar, R.M.C. (2000) The late Palaeozoic relations between Gondwana and Laurussia. In Orogenic Processes; Quantification and Modelling in the Variscan Belt (eds. V. Haak, C. Mac Niocaill, O. Oncken, and D. Tanner), Geological Society of London, London, pp. 9-20.
60. McKinney, K.C., Cobban, W.A., and Phan, N.T. (2003) GIS application of the newly digitized USGS-Denver Cretaceous fossil mollusk collection. Abstracts with Programs - Geological Society of America, 35: 278.
61. McKinney, K.C., Cobban, W.A., and Phan, N.T. (2004) GIS application of the newly digitized USGS-Denver Cretaceous fossil mollusk collection. Open-File Report - U. S. Geological Survey, 30.
62. Mensing, S.A., Elston, R.G., Jr., Raines, G.L., Tausch, R.J., and Nowak, C.L. (2000) A GIS model to predict the location of fossil packrat (Neotoma) middens in central Nevada. Western North American Naturalist, 60: 111-120.
63. Murphy, J.B. and Keppie, J.D. (1998) Late Devonian palinspastic reconstruction of the Avalon-Meguma terrane boundary; Implications for terrane accretion and basin development in the Appalachian Orogen. Tectonophysics, 284: 221-231.
64. Nee, S. (2004) Extinct meets extant; Simple models in paleontology and molecular phylogenetics. Paleobiology, 30: 172-178.
65. Oliver, W.A., Jr. (1976) Biogeography of Devonian rugose corals. Journal of Paleontology, 50: 365-373.
66. Oliver, W.A., Jr. (1990) Extinctions and migrations of Devonian rugose corals in the eastern Americas realm. Lethaia, 23: 167-178.
67. Oliver, W.A., Jr. and Pedder, A.E.H. (1994) Crises in the Devonian history of the rugose corals. Paleobiology, 20: 178-190.
68. Page, R.D.M. (1994) Maps between trees and cladistic analysis of historical associations among genes, organisms, and areas. Systematic Biology, 43: 58-77.
69. Peterson, A.T. and Vieglais, D.A. (2001) Predicting species invasions using ecological niche modeling: New approaches from bioinformatics attack a pressing problem. Bioscience, 51: 363-371.
70. Quinlan, G.M. and Beaumont, C. (1984) Appalachian thrusting, lithospheric flexure, and the Paleozoic stratigraphy of the Eastern Interior of North America. Canadian Journal of Earth Sciences, 21: 973-996.
71. Rayfield, E.J., Barrett, P.M., McDonnell, R.A., and Willis, K.J. (2005) A geographical information system (GIS) study of Triassic vertebrate biochronology. Geological Magazine, 142: 327-354.
72. Raymond, A. and Metz, C. (1995) Laurussian land-plant diversity during the Silurian and Devonian; Mass extinction, sampling bias, or both? Paleobiology, 21: 74-91.
73. Rode, A.L. (2004) Phylogenetic revision of Leptodesma (Leiopteria) (Devonian, Bivalvia). Yale University Postilla, 229: 1-26.
74. Rode, A.L. and Lieberman, B.S. (2000) Using GIS and phylogenetics to study the role of invasive species in the Late Devonian mass extinction. Geological Society of America, Abstracts with Programs, 32: 368.
75. Rode, A.L. and Lieberman, B.S. (2002) Phylogenetic and biogeographic analysis of Devonian phyllocarid crustaceans. Journal of Paleontology, 76: 271-286.
76. Rode, A.L. and Lieberman, B.S. (2004) Using GIS to unlock the interactions between biogeography, environment, and evolution in Middle and Late Devonian brachiopods and bivalves. Palaeogeography, Palaeoclimatology, Palaeoecology, 211: 345-359.
77. Rode, A.L. and Lieberman, B.S. (2005) Integrating evolution and biogeography; A case study involving Devonian crustaceans. Journal of Paleontology, 79: 267-276.
78. Ronquist, F. (1997) Dispersal-vicariance analysis: A new approach to the quantification of historical biogeography. Systematic Biology, 46: 195-203.
79. Rosen, B.R. and Smith, A.B. (1988) Tectonics from fossils? Analysis of reef-coral and sea-urchin distributions from Late Cretaceous to Recent, using a new method. Geological Society Special Publications, 37.
80. Ross, M.I. and Scotese, C.R. (2000) PaleoGIS/ArcView 3.5.
81. Roy, K., Jablonski, D., and Valentine, J.W. (2001) Climate change, species range limits, and body size in marine bivalves. Ecology Letters, 4: 366-370.
82. Roy, K., Jablonski, D., and Valentine, J.W. (2004) Beyond species richness: Biogeographic patterns and biodiversity dynamics using other metrics of diversity. In Frontiers of Biogeography: New Directions in the Geography of Nature (eds. M.V. Lomolino and L.R. Heaney), Sinauer, Sunderland, MA, pp. 151-170.
83. Rushton, S.P., Ormerod, S.J., and Kerby, G. (2004) New paradigms for modelling species distributions? Journal of Applied Ecology, 41: 193-200.
84. Sanchez-Cordero, V., Munguia, M., and Peterson, A.T. (2004) GIS-based predictive biogeography in the context of conservation. In Frontiers of Biogeography: New Directions in the Geography of Nature (eds. M.V. Lomolino and L.R. Heaney), Sinauer, Sunderland, MA, pp. 311-323.
85. Scotese, C.R. (2004) Point Tracker, PALEOMAP Project, University of Texas at Arlington.
86. Sepkoski, J.J. (1986) Patterns of Phanerozoic extinction: A perspective from global data bases. In Global Events and Event Stratigraphy in the Phanerozoic (ed. O.H. Walliser), Springer, Berlin, pp. 35-51.
87. Shen, S. and Shi, G.R. (2004) Capitanian (late Guadalupian, Permian) global brachiopod palaeobiogeography and latitudinal diversity pattern. Palaeogeography, Palaeoclimatology, Palaeoecology, 208: 235-262.
88. Smith, A.B. (1994) Systematics and the Fossil Record; Documenting Evolutionary Patterns, Blackwell Scientific, Oxford.
89. Stigall, A.L. (2006a) Getting Started with GIS for Paleobiogeographic Reconstruction: Using Excel, PaleoGIS, Point Tracker, ArcView 3.x, and ArcGIS 9.x. Electronic book, http://oak.cats.ohiou.edu/~stigall/
90. Stigall, A.L. (2006b) Faunal dynamics of the Late Devonian Biodiversity Crisis: A complex interplay of speciation, extinction, and biogeographic change. Geological Society of America, Abstracts with Programs, 38: xx.
91. Stigall, A.L. (2010). Speciation decline during the Late Devonian Biodiversity Crisis related to species invasions. PLoS ONE, 5(12): e15584.
92. Stigall, A.L. and Lieberman, B.S. (2006) Quantitative paleobiogeography: GIS, phylogenetic biogeographic analysis, and conservation insights. Journal of Biogeography, 33: 2051-2060.
93. Stigall Rode, A.L. (2005a) Systematic revision of the Middle and Late Devonian brachiopods Schizophoria (Schizophoria) and ‘Schuchertella’ from North America. Journal of Systematic Palaeontology, 3: 133-167.
94. Stigall Rode, A.L. (2005b) The application of Geographic Information Systems to paleobiogeography: Implications for the study of invasions and mass extinctions. Paleontological Society Memoirs, 11: 77-88.
95. Stigall Rode, A.L. and Lieberman, B.S. (2005a) Paleobiogeographic patterns in the Middle and Late Devonian emphasizing Laurentia. Palaeogeography, Palaeoclimatology, Palaeoecology, 222: 272-284.
96. Stigall Rode, A.L. and Lieberman, B.S. (2005b) Using environmental niche modelling to study the Late Devonian biodiversity crisis. In Understanding Late Devonian and Permian-Triassic Biotic and Climatic Events: Towards an Integrated Approach (eds. D.J. Over, J.R. Morrow, and P.B. Wignall), Elsevier, Amsterdam, pp. 93-178.
97. Stockwell, D.R.B. and Peters, D. (1999) The GARP modelling system: Problems and solutions to automated spatial prediction. International Journal of Geographical Information Science, 13: 143-158.
98. Stockwell, D.R.B. and Peterson, A.T. (2002) Effects of sample size on accuracy of species distribution models. Ecological Modelling, 148: 1-13.
99. Theobald, D.M. (2003) GIS concepts and ArcGIS methods, 1st edition, Conservation Planning Technologies, Fort Collins, CO.
100. Thomas, C.D., Cameron, A., Green, R.E., Bakkenes, M., Beaumont, L.J., Collingham, Y.C., Erasmus, B.F.N., Ferreira de Siqueira, M., Grainger, A., Hannah, L., Hughes, L., Huntley, B., Van Jaarsveld, A.S., Midgley, G.F., Miles, L., Ortega-Huerta, M.A., Peterson, A.T., Phillips, O.L., and Williams, S.E. (2004) Extinction risk from climate change. Nature, 427: 145-148.
101. Valentine, J.W. (1989) How good was the fossil record? Clues from the Californian Pleistocene. Paleobiology, 15: 83-94.
102. Van der Voo, R. (1988) Paleozoic paleogeography of North America, Gondwana, and intervening displaced terranes; Comparisons of paleomagnetism with paleoclimatology and biogeographical patterns. Geological Society of America Bulletin, 100: 311-324.
103. Ver Straeten, C.A. and Brett, C.E. (2000) Bulge migration and pinnacle reef development, Devonian Appalachian foreland basin. Journal of Geology, 108: 339-352.
104. Vermeersch, P.M. (2005) European population changes during marine isotope stages 2 and 3. Quaternary International, 137: 77-85.
105. Walls, B.J., and Stigall, A.L. (2011) Palaeobiogeography of Late Ordovician (Maysvillian) brachiopod species of the Cincinnati Ohio region: A niche modeling approach. Palaeogeography, Palaeoclimatology, Palaeoecology, 299: 15-29.
106. Webby, B.D. (1992) Global biogeography of Ordovician corals and stromatoporoids, Vol. 6. In Proceedings of the International Symposium on the Ordovician System (eds. B.D. Webby and J.R. Laurie), pp. 261-276.
107. Wiley, E.O. and Mayden, R.L. (1985) Species and speciation in phylogenetic systematics, with examples from North American fish fauna. Annals of the Missouri Botanical Gardens, 72.
108. Wilson, R.J., Thomas, C.D., Fox, R., Roy, D.B., and Kunin, W.E. (2004) Spatial patterns in species distributions reveal biodiversity change. Nature, 432: 393-396.
109. Wojcicki, M. and Brooks, D.R. (2005) PACT: An efficient and powerful algorithm for generating area cladograms. Journal of Biogeography, 32: 755-774.
110. Yacobucci, M.M. and Manship, L. (2003) Putting ammonites on the map; GIS mapping of constraints and asymmetry in ammonite suture shape. Abstracts with Programs-Geological Society of America, 35: 317-318.
111. Young, G.C. (1987) Devonian palaeontological data and the Armorica problem. Palaeogeography, Palaeoclimatology, Palaeoecology, 60: 283-304.