-
1
-
-
18344396487
-
Lsm proteins and RNA processing
-
DOI 10.1042/BST0330433
-
Beggs JD. 2005. Lsm proteins and RNA processing. Biochem Soc Trans 33: 433-438. (Pubitemid 40873859)
-
(2005)
Biochemical Society Transactions
, vol.33
, Issue.3
, pp. 433-438
-
-
Beggs, J.D.1
-
2
-
-
0031841817
-
Capped mRNA degradation intermediates accumulate in the yeast spb8-2 mutant
-
Boeck R, Lapeyre B, Brown CE, Sachs AB. 1998. Capped mRNA degradation intermediates accumulate in the yeast spb8-2 mutant. Mol Cell Biol 18: 5062-5072. (Pubitemid 28388089)
-
(1998)
Molecular and Cellular Biology
, vol.18
, Issue.9
, pp. 5062-5072
-
-
Boeck, R.1
Lapeyre, B.2
Brown, C.E.3
Sachs, A.B.4
-
3
-
-
0033866402
-
The two proteins Pat1p (mrt1p) and Spb8p interact in vivo, are required for mRNA decay, and are functionally linked to pab1p
-
DOI 10.1128/MCB.20.16.5939-5946.2000
-
Bonnerot C, Boeck R, Lapeyre B. 2000. The two proteins Pat1p (Mrt1p) and Spb8p interact in vivo, are required for mRNA decay, and are functionally linked to Pab1p. Mol Cell Biol 20: 5939-5946. (Pubitemid 30613043)
-
(2000)
Molecular and Cellular Biology
, vol.20
, Issue.16
, pp. 5939-5946
-
-
Bonnerot, C.1
Boeck, R.2
Lapeyre, B.3
-
4
-
-
0034599976
-
A Sm-like protein complex that participates in mRNA degradation
-
Bouveret E, Rigaut G, Shevchenko A, Wilm M, Seraphin B. 2000. A Sm-like protein complex that participates in mRNA degradation. EMBO J 19: 1661-1671. (Pubitemid 30182172)
-
(2000)
EMBO Journal
, vol.19
, Issue.7
, pp. 1661-1671
-
-
Bouveret, E.1
Rigaut, G.2
Shevchenko, A.3
Wilm, M.4
Seraphin, B.5
-
5
-
-
52949141485
-
Lsm1 mutations impairing the ability of the Lsm1p-7p-Pat1p complex to preferentially bind to oligoadenylated RNA affect mRNA decay in vivo
-
Chowdhury A, Tharun S. 2008. lsm1 mutations impairing the ability of the Lsm1p-7p-Pat1p complex to preferentially bind to oligoadenylated RNA affect mRNA decay in vivo. RNA 14: 2149-2158.
-
(2008)
RNA
, vol.14
, pp. 2149-2158
-
-
Chowdhury, A.1
Tharun, S.2
-
6
-
-
70349124647
-
Activation of decapping involves binding of the mRNA and facilitation of the post-binding steps by the Lsm1-7-Pat1 complex
-
Chowdhury A, Tharun S. 2009. Activation of decapping involves binding of the mRNA and facilitation of the post-binding steps by the Lsm1-7-Pat1 complex. RNA 15: 1837-1848.
-
(2009)
RNA
, vol.15
, pp. 1837-1848
-
-
Chowdhury, A.1
Tharun, S.2
-
7
-
-
34250804009
-
The decapping activator Lsm1p-7p-Pat1p complex has the intrinsic ability to distinguish between oligoadenylated and polyadenylated RNAs
-
DOI 10.1261/rna.502507
-
Chowdhury A, Mukhopadhyay J, Tharun S. 2007. The decapping activator Lsm1p-7p-Pat1p complex has the intrinsic ability to distinguish between oligoadenylated and polyadenylated RNAs. RNA 13: 998-1016. (Pubitemid 46984891)
-
(2007)
RNA
, vol.13
, Issue.7
, pp. 998-1016
-
-
Chowdhury, A.1
Mukhopadhyay, J.2
Tharun, S.3
-
8
-
-
3943051423
-
Eukaryotic mRNA decapping
-
DOI 10.1146/annurev.biochem.73.011303.074032
-
Coller J, Parker R. 2004. Eukaryotic mRNA decapping. Annu Rev Biochem 73: 861-890. (Pubitemid 39050388)
-
(2004)
Annual Review of Biochemistry
, vol.73
, pp. 861-890
-
-
Coller, J.1
Parker, R.2
-
9
-
-
0035876146
-
Crystal structure of a heptameric Sm-like protein complex from archaea: Implications for the structure and evolution of snRNPs
-
DOI 10.1006/jmbi.2001.4693
-
Collins BM, Harrop SJ, Kornfeld GD, Dawes IW, Curmi PM, Mabbutt BC. 2001. Crystal structure of a heptameric Sm-like protein complex from archaea: implications for the structure and evolution of snRNPs. J Mol Biol 309: 915-923. (Pubitemid 32575084)
-
(2001)
Journal of Molecular Biology
, vol.309
, Issue.4
, pp. 915-923
-
-
Collins, B.M.1
Harrop, S.J.2
Kornfeld, G.D.3
Dawes, I.W.4
Curmi, P.M.G.5
Mabbutt, B.C.6
-
10
-
-
0029054375
-
Identification and characterization of Uss1p (Sdb23p): A novel U6 snRNA-associated protein with significant similarity to core proteins of small nuclear ribonucleoproteins
-
Cooper M, Johnston LH, Beggs JD. 1995. Identification and characterization of Uss1p (Sdb23p): a novel U6 snRNA-associated protein with significant similarity to core proteins of small nuclear ribonucleoproteins. EMBO J 14: 2066-2075.
-
(1995)
EMBO J
, vol.14
, pp. 2066-2075
-
-
Cooper, M.1
Johnston, L.H.2
Beggs, J.D.3
-
11
-
-
0027320701
-
A turnover pathway for both stable and unstable mRNAs in yeast: Evidence for a requirement for deadenylation
-
Decker CJ, Parker R. 1993. A turnover pathway for both stable and unstable mRNAs in yeast: Evidence for a requirement for deadenylation. Genes Dev 7: 1632-1643. (Pubitemid 23234355)
-
(1993)
Genes and Development
, vol.7
, Issue.8
, pp. 1632-1643
-
-
Decker, C.J.1
Parker, R.2
-
12
-
-
35948951960
-
Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae
-
DOI 10.1083/jcb.200704147
-
Decker CJ, Teixeira D, Parker R. 2007. Edc3p and a glutamine/asparagine- rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae. J Cell Biol 179: 437-449. (Pubitemid 350074789)
-
(2007)
Journal of Cell Biology
, vol.179
, Issue.3
, pp. 437-449
-
-
Decker, C.J.1
Teixeira, D.2
Parker, R.3
-
14
-
-
0029791555
-
Mutations in trans-acting factors affecting mRNA decapping in Saccharomyces cerevisiae
-
Hatfield L, Beelman CA, Stevens A, Parker R. 1996. Mutations in transacting factors affecting mRNA decapping in Saccharomyces cerevisiae. Mol Cell Biol 16: 5830-5838. (Pubitemid 26315104)
-
(1996)
Molecular and Cellular Biology
, vol.16
, Issue.10
, pp. 5830-5838
-
-
Hatfield, L.1
Beelman, C.A.2
Stevens, A.3
Parker, R.4
-
15
-
-
0034741815
-
The yeast cytoplasmic lsm1/pat1p complex protects mRNA 39 termini from partial degradation
-
He W, Parker R. 2001. The yeast cytoplasmic LsmI/Pat1p complex protects mRNA 39 termini from partial degradation. Genetics 158: 1445-1455. (Pubitemid 32783132)
-
(2001)
Genetics
, vol.158
, Issue.4
, pp. 1445-1455
-
-
He, W.1
Parker, R.2
-
16
-
-
0029054377
-
snRNP Sm proteins share two evolutionarily conserved sequence motifs which are involved in Sm proteinprotein interactions
-
Hermann H, Fabrizio P, Raker VA, Foulaki K, Hornig H, Brahms H, Luhrmann R. 1995. snRNP Sm proteins share two evolutionarily conserved sequence motifs which are involved in Sm proteinprotein interactions. EMBO J 14: 2076-2088.
-
(1995)
EMBO J
, vol.14
, pp. 2076-2088
-
-
Hermann, H.1
Fabrizio, P.2
Raker, V.A.3
Foulaki, K.4
Hornig, H.5
Brahms, H.6
Luhrmann, R.7
-
17
-
-
60149090021
-
The many pathways of RNA degradation
-
Houseley J, Tollervey D. 2009. The many pathways of RNA degradation. Cell 136: 763-776.
-
(2009)
Cell
, vol.136
, pp. 763-776
-
-
Houseley, J.1
Tollervey, D.2
-
18
-
-
0036909093
-
The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrn1 in distinct cytoplasmic foci
-
Ingelfinger D, Arndt-Jovin DJ, Luhrmann R, Achsel T. 2002. The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrn1 in distinct cytoplasmic foci. RNA 8: 1489-1501. (Pubitemid 36009020)
-
(2002)
RNA
, vol.8
, Issue.12
, pp. 1489-1501
-
-
Ingelfinger, D.1
Arndt-Jovin, D.J.2
Luhrmann, R.3
Achsel, T.4
-
19
-
-
0033524941
-
Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs
-
DOI 10.1016/S0092-8674(00)80550-4
-
Kambach C, Walke S, Young R, Avis JM, de la Fortelle E, Raker VA, Luhrmann R, Li J, Nagai K. 1999. Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs. Cell 96: 375-387. (Pubitemid 29077591)
-
(1999)
Cell
, vol.96
, Issue.3
, pp. 375-387
-
-
Kambach, C.1
Walke, S.2
Young, R.3
Avis, J.M.4
De La, F.E.5
Raker, V.A.6
Luhrmann, R.7
Li, J.8
Nagai, K.9
-
20
-
-
58149193233
-
The SWISS-MODEL Repository and associated resources
-
Kiefer F, Arnold K, Kunzli M, Bordoli L, Schwede T. 2009. The SWISS-MODEL Repository and associated resources. Nucleic Acids Res 37: D387-D392.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Kiefer, F.1
Arnold, K.2
Kunzli, M.3
Bordoli, L.4
Schwede, T.5
-
21
-
-
0033517098
-
Characterization of Sm-like proteins in yeast and their association with U6 snRNA
-
DOI 10.1093/emboj/18.15.4321
-
Mayes AE, Verdone L, Legrain P, Beggs JD. 1999. Characterization of Sm-like proteins in yeast and their association with U6 snRNA. EMBO J 18: 4321-4331. (Pubitemid 29364134)
-
(1999)
EMBO Journal
, vol.18
, Issue.15
, pp. 4321-4331
-
-
Mayes, A.E.1
Verdone, L.2
Legrain, P.3
Beggs, J.D.4
-
22
-
-
16544365115
-
Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs
-
Mikulecky PJ, Kaw MK, Brescia CC, Takach JC, Sledjeski DD, Feig AL. 2004. Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs. Nat Struct Mol Biol 11: 1206-1214.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 1206-1214
-
-
Mikulecky, P.J.1
Kaw, M.K.2
Brescia, C.C.3
Takach, J.C.4
Sledjeski, D.D.5
Feig, A.L.6
-
23
-
-
0035826794
-
The crystal structure of a heptameric archaeal Sm protein: Implications for the eukaryotic snRNP core
-
DOI 10.1073/pnas.091102298
-
Mura C, Cascio D, Sawaya MR, Eisenberg DS. 2001. The crystal structure of a heptameric archaeal Sm protein: Implications for the eukaryotic snRNP core. Proc Natl Acad Sci 98: 5532-5537. (Pubitemid 32435676)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.10
, pp. 5532-5537
-
-
Mura, C.1
Cascio, D.2
Sawaya, M.R.3
Eisenberg, D.S.4
-
24
-
-
0037378351
-
The oligomerization and ligand-binding properties of Sm-like archaeal proteins (SmAPs)
-
DOI 10.1110/ps.0224703
-
Mura C, Kozhukhovsky A, Gingery M, Phillips M, Eisenberg D. 2003a. The oligomerization and ligand-binding properties of Sm-like archaeal proteins (SmAPs). Protein Sci 12: 832-847. (Pubitemid 36348470)
-
(2003)
Protein Science
, vol.12
, Issue.4
, pp. 832-847
-
-
Mura, C.1
Kozhukhovsky, A.2
Gingery, M.3
Phillips, M.4
Eisenberg, D.5
-
25
-
-
0344059121
-
Structure and assembly of an augmented Sm-like archaeal protein 14-mer
-
DOI 10.1073/pnas.0538042100
-
Mura C, Phillips M, Kozhukhovsky A, Eisenberg D. 2003b. Structure and assembly of an augmented Sm-like archaeal protein 14-mer. Proc Natl Acad Sci 100: 4539-4544. (Pubitemid 36457766)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.8
, pp. 4539-4544
-
-
Mura, C.1
Phillips, M.2
Kozhukhovsky, A.3
Eisenberg, D.4
-
26
-
-
40849094144
-
Crystal structure of Lsm3 octamer from Saccharomyces cerevisiae: Implications for Lsm ring organisation and recruitment
-
Naidoo N, Harrop SJ, Sobti M, Haynes PA, Szymczyna BR, Williamson JR, Curmi PM, Mabbutt BC. 2008. Crystal structure of Lsm3 octamer from Saccharomyces cerevisiae: implications for Lsm ring organisation and recruitment. J Mol Biol 377: 1357-1371.
-
(2008)
J Mol Biol
, vol.377
, pp. 1357-1371
-
-
Naidoo, N.1
Harrop, S.J.2
Sobti, M.3
Haynes, P.A.4
Szymczyna, B.R.5
Williamson, J.R.6
Curmi, P.M.7
Mabbutt, B.C.8
-
27
-
-
38949151861
-
Pat1 contains distinct functional domains that promote P-body assembly and activation of decapping
-
DOI 10.1128/MCB.00936-07
-
Pilkington GR, Parker R. 2008. Pat1 contains distinct functional domains that promote P-body assembly and activation of decapping. Mol Cell Biol 28: 1298-1312. (Pubitemid 351214132)
-
(2008)
Molecular and Cellular Biology
, vol.28
, Issue.4
, pp. 1298-1312
-
-
Pilkington, G.R.1
Parker, R.2
-
28
-
-
67650445667
-
Analysis of Lsm1p and Lsm8p domains in the cellular localization of Lsm complexes in budding yeast
-
Reijns MA, Auchynnikava T, Beggs JD. 2009. Analysis of Lsm1p and Lsm8p domains in the cellular localization of Lsm complexes in budding yeast. FEBS J 276: 3602-3617.
-
(2009)
FEBS J
, vol.276
, pp. 3602-3617
-
-
Reijns, M.A.1
Auchynnikava, T.2
Beggs, J.D.3
-
29
-
-
0033564627
-
Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin
-
DOI 10.1093/emboj/18.12.3451
-
Salgado-Garrido J, Bragado-Nilsson E, Kandels-Lewis S, Seraphin B. 1999. Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J 18: 3451-3462. (Pubitemid 29276590)
-
(1999)
EMBO Journal
, vol.18
, Issue.12
, pp. 3451-3462
-
-
Salgado-Garrido, J.1
Bragado-Nilsson, E.2
Kandels-Lewis, S.3
Seraphin, B.4
-
30
-
-
0036645689
-
Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: A bacterial Sm-like protein
-
DOI 10.1093/emboj/cdf322
-
Schumacher MA, Pearson RF, Moller T, Valentin-Hansen P, Brennan RG. 2002. Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein. EMBO J 21: 3546-3556. (Pubitemid 34760584)
-
(2002)
EMBO Journal
, vol.21
, Issue.13
, pp. 3546-3556
-
-
Schumacher, M.A.1
Pearson, R.F.2
Moller, T.3
Valentin-Hansen, P.4
Brennan, R.G.5
-
31
-
-
0028997105
-
Sm and Sm-like proteins belong to a large family: Identification of proteins of the U6 as well as the U1, U2, U4 and U5 snRNPs
-
Seraphin B. 1995. Sm and Sm-like proteins belong to a large family: identification of proteins of the U6 as well as the U1, U2, U4 and U5 snRNPs. EMBO J 14: 2089-2098.
-
(1995)
EMBO J
, vol.14
, pp. 2089-2098
-
-
Seraphin, B.1
-
32
-
-
0024669291
-
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
-
Sikorski RS, Hieter P. 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19-27.
-
(1989)
Genetics
, vol.122
, pp. 19-27
-
-
Sikorski, R.S.1
Hieter, P.2
-
33
-
-
57749195149
-
Purification and analysis of the decapping activator Lsm1p-7p-Pat1p complex from yeast
-
Tharun S. 2008. Purification and analysis of the decapping activator Lsm1p-7p-Pat1p complex from yeast. Methods Enzymol 448: 41-55.
-
(2008)
Methods Enzymol
, vol.448
, pp. 41-55
-
-
Tharun, S.1
-
34
-
-
58049161508
-
Roles of eukaryotic Lsm proteins in the regulation of mRNA function
-
Tharun S. 2009. Roles of eukaryotic Lsm proteins in the regulation of mRNA function. Int Rev Cell Mol Biol 272: 149-189.
-
(2009)
Int Rev Cell Mol Biol
, vol.272
, pp. 149-189
-
-
Tharun, S.1
-
35
-
-
0034732089
-
Yeast Sm-like proteins function in mRNA decapping and decay
-
DOI 10.1038/35006676
-
Tharun S, He W, Mayes AE, Lennertz P, Beggs JD, Parker R. 2000. Yeast Sm-like proteins function in mRNA decapping and decay. Nature 404: 515-518. (Pubitemid 30186896)
-
(2000)
Nature
, vol.404
, Issue.6777
, pp. 515-518
-
-
Tharun, S.1
He, W.2
Mayes, A.E.3
Lennertz, P.4
Beggs, J.D.5
Parker, R.6
-
36
-
-
20444429430
-
Mutations in the Saccharomyces cerevisiae LSM1 gene that affect mRNA decapping and 3′ end protection
-
DOI 10.1534/genetics.104.034322
-
Tharun S, Muhlrad D, Chowdhury A, Parker R. 2005. Mutations in the Saccharomyces cerevisiae LSM1 gene that affect mRNA decapping and 3′ end protection. Genetics 170: 33-46. (Pubitemid 40799969)
-
(2005)
Genetics
, vol.170
, Issue.1
, pp. 33-46
-
-
Tharun, S.1
Muhlrad, D.2
Chowdhury, A.3
Parker, R.4
-
37
-
-
0035341325
-
RNA binding in an Sm core domain: X-ray structure and functional analysis of an archaeal Sm protein complex
-
DOI 10.1093/emboj/20.9.2293
-
Toro I, Thore S, Mayer C, Basquin J, Seraphin B, Suck D. 2001. RNA binding in an Sm core domain: X-ray structure and functional analysis of an archaeal Sm protein complex. EMBO J 20: 2293-2303. (Pubitemid 32410598)
-
(2001)
EMBO Journal
, vol.20
, Issue.9
, pp. 2293-2303
-
-
Toro, I.1
Thore, S.2
Mayer, C.3
Basquin, J.4
Seraphin, B.5
Suck, D.6
-
38
-
-
78649722117
-
The human Pat1b protein: A novel mRNA deadenylation factor identified by a new immunoprecipitation technique
-
Totaro A, Renzi F, La Fata G, Mattioli C, Raabe M, Urlaub H, Achsel T. 2011. The human Pat1b protein: a novel mRNA deadenylation factor identified by a new immunoprecipitation technique. Nucleic Acids Res 39: 635-647.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 635-647
-
-
Totaro, A.1
Renzi, F.2
La Fata, G.3
Mattioli, C.4
Raabe, M.5
Urlaub, H.6
Achsel, T.7
-
39
-
-
38349138513
-
The C-terminal domain of Escherichia coli Hfq is required for regulation
-
Vecerek B, Rajkowitsch L, Sonnleitner E, Schroeder R, Blasi U. 2008. The C-terminal domain of Escherichia coli Hfq is required for regulation. Nucleic Acids Res 36: 133-143.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 133-143
-
-
Vecerek, B.1
Rajkowitsch, L.2
Sonnleitner, E.3
Schroeder, R.4
Blasi, U.5
-
40
-
-
28544442127
-
Eukaryotic Lsm proteins: Lessons from bacteria
-
DOI 10.1038/nsmb1037
-
Wilusz CJ, Wilusz J. 2005. Eukaryotic Lsm proteins: lessons from bacteria. Nat Struct Mol Biol 12: 1031-1036. (Pubitemid 41746772)
-
(2005)
Nature Structural and Molecular Biology
, vol.12
, Issue.12
, pp. 1031-1036
-
-
Wilusz, C.J.1
Wilusz, J.2
|