Analysis of the Nse3/MAGE-binding domain of the Nse4/EID family proteins

PLoS ONE

Volumn 7, Issue 4, 2012, Pages

  Guerineau, Marc ^a   Kriz, Zdenek ^a   Kozakova, Lucie ^a   Bednarova, Katerina ^a   Janos, Pavel ^a   Palecek, Jan ^a  

^a MASARYK UNIVERSITY   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

INHIBITOR OF DIFFERENTIATION PROTEIN; MELANOMA ANTIGEN; PROTEIN EID2; UNCLASSIFIED DRUG; CARRIER PROTEIN; CELL CYCLE PROTEIN; EID2 PROTEIN, HUMAN; EID3 PROTEIN, HUMAN; NDNL2 PROTEIN, HUMAN; NSE3 PROTEIN, S POMBE; NUCLEAR PROTEIN; PEPTIDE FRAGMENT; RAD62 PROTEIN, S POMBE; RECOMBINANT PROTEIN; SCHIZOSACCHAROMYCES POMBE PROTEIN; SIGNAL PEPTIDE; SMC5 PROTEIN, HUMAN;

ARTICLE; BINDING AFFINITY; CONTROLLED STUDY; HUMAN; MOLECULAR DYNAMICS; MUTAGENESIS; NONHUMAN; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN EXPRESSION; PROTEIN FAMILY; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROTEIN DOMAIN; SCHIZOSACCHAROMYCES; SITE DIRECTED MUTAGENESIS; TWO HYBRID SYSTEM;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; CARRIER PROTEINS; CELL CYCLE PROTEINS; COMPUTER SIMULATION; CONSERVED SEQUENCE; HUMANS; INTRACELLULAR SIGNALING PEPTIDES AND PROTEINS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; NUCLEAR PROTEINS; PEPTIDE FRAGMENTS; PROTEIN BINDING; PROTEIN INTERACTION DOMAINS AND MOTIFS; RECOMBINANT PROTEINS; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE PROTEINS; TWO-HYBRID SYSTEM TECHNIQUES;

EID: 84859977799     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0035813     Document Type: Article

References (33)

1. Murray JM, Carr AM, (2007) Smc5/6: a link between DNA repair and unidirectional replication? Nat Rev Mol Cell Biol 9: 177-182.
2. De Piccoli G, Torres-Rosell J, Aragon L, (2009) The unnamed complex: what do we know about Smc5-Smc6? Chromosome Res 17: 251-263.
3. Lehmann AR, (2005) The role of SMC proteins in the responses to DNA damage. DNA Repair (Amst) 4: 309-314.
4. Lehmann AR, Walicka M, Griffiths DJF, Murray JM, Watts FZ, et al. (1995) The rad18 gene of Schizosaccharomyces pombe defines a new subgroup of the SMC superfamily involved in DNA repair. Mol Cell Biol 15: 7067-7080.
5. Fousteri MI, Lehmann AR, (2000) A novel SMC protein complex in Schizosaccharomyces pombe contains the Rad18 DNA repair protein. EMBO J 19: 1691-1702.
6. Sergeant J, Taylor E, Palecek J, Fousteri M, Andrews E, et al. (2005) Composition and architecture of the Schizosaccharomyces pombe Rad18 (Smc5-6) complex. Mol Cell Biol 25: 172-184.
7. Taylor EM, Moghraby JS, Lees JH, Smit B, Moens PB, et al. (2001) Characterization of a novel human SMC heterodimer homologous to the Schizosaccharomyces pombe Rad18/Spr18 complex. Mol Biol Cell 12: 1583-1594.
8. Duan X, Yang Y, Chen YH, Arenz J, Rangi GK, et al. (2009) Architecture of the Smc5/6 Complex of Saccharomyces cerevisiae Reveals a Unique Interaction between the Nse5-6 Subcomplex and the Hinge Regions of Smc5 and Smc6. J Biol Chem 284: 8507-8515.
9. Hudson JJR, Bednarova K, Kozakova L, Liao C, Guerineau M, et al. (2011) Interactions between the Nse3 and Nse4 components of the SMC5-6 complex identify evolutionarily conserved interactions between MAGE and EID families. PLOS One 6: e17270.
10. Palecek J, Vidot S, Feng M, Doherty AJ, Lehmann AR, (2006) The SMC5-6 DNA repair complex: Bridging of the SMC5-6 heads by the Kleisin, NSE4, and non-Kleisin subunits. J Biol Chem 281: 36952-36959.
11. Schleiffer A, Kaitna S, Maurer-Stroh S, Glotzer M, Nasmyth K, et al. (2003) Kleisins: a superfamily of bacterial and eukaryotic SMC protein partners. Mol Cell 11: 571-575.
12. Haering CH, Schoffnegger D, Nishino T, Helmhart W, Nasmyth K, et al. (2004) Structure and Stability of Cohesin's Smc1-Kleisin Interaction. Mol Cell 15: 951-964.
13. Barker PA, Salehi A, (2002) The MAGE proteins: emerging roles in cell cycle progression, apoptosis, and neurogenetic disease. J Neurosci Res 67: 705-712.
14. Chomez P, De Backer O, Bertrand M, De Plaen E, Boon T, et al. (2001) An overview of the MAGE gene family with the identification of all human members of the family. Cancer Res 61: 5544-5551.
15. Caballero OL, Zhao Q, Rimoldi D, Stevenson BJ, Svobodova S, et al. (2010) Frequent MAGE mutations in human melanoma. PLoS One 5: e12773.
16. Taylor EM, Copsey AC, Hudson JJ, Vidot S, Lehmann AR, (2008) Identification of the proteins, including MAGEG1, that make up the human SMC5-6 protein complex. Mol Cell Biol 28: 1197-1206.
17. Doyle JM, Gao J, Wang J, Yang M, Potts PR, (2010) MAGE-RING protein complexes comprise a family of E3 ubiquitin ligases. Mol Cell 39: 963-974.
18. Bavner A, Matthews J, Sanyal S, Gustafsson JA, Treuter E, (2005) EID3 is a novel EID family member and an inhibitor of CBP-dependent co-activation. Nucleic Acids Res 33: 3561-3569.
19. Bush JR, Wevrick R, (2008) The Prader-Willi syndrome protein necdin interacts with the E1A-like inhibitor of differentiation EID-1 and promotes myoblast differentiation. Differentiation 76: 994-1005.
20. Pebernard S, Wohlschlegel J, McDonald WH, Yates JR 3rd, Boddy MN, (2006) The Nse5-Nse6 dimer mediates DNA repair roles of the Smc5-Smc6 complex. Mol Cell Biol 26: 1617-1630.
21. Roy A, Kucukural A, Zhang Y, (2010) I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc 5: 725-738.
22. Ritchie DW, Kozakov D, Vajda S, (2008) Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions. Bioinformatics 24: 1865-1873.
23. Katsura Y, Satta Y, (2011) Evolutionary history of the cancer immunity antigen MAGE gene family. PLoS One 6: e20365.
24. Miyake S, Sellers WR, Safran M, Li X, Zhao W, et al. (2000) Cells degrade a novel inhibitor of differentiation with E1A-like properties upon exiting the cell cycle. Mol Cell Biol 20: 8889-8902.
25. Miyake S, Yanagisawa Y, Yuasa Y, (2003) A novel EID-1 family member, EID-2, associates with histone deacetylases and inhibits muscle differentiation. J Biol Chem 278: 17060-17065 Epub 12003 Feb 17013.
26. Ji A, Dao D, Chen J, MacLellan WR, (2003) EID-2, a novel member of the EID family of p300-binding proteins inhibits transactivation by MyoD. Gene 318: 35-43.
27. Routzahn KM, Waugh DS, (2002) Differential effects of supplementary affinity tags on the solubility of MBP fusion proteins. J Struct Funct Genomics 2: 83-92.
28. Pospisilova S, Brazda V, Amrichova J, Kamermeierova R, Palecek E, et al. (2000) Precise characterisation of monoclonal antibodies to the C-terminal region of p53 protein using the PEPSCAN ELISA technique and a new non-radioactive gel shift assay. J Immunol Methods 237: 51-64.
29. Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML, (1983) Comparison of simple potential functions for simulating liquid water. Journal of Chemical Physics 79: 926-935.
30. Case DA, Cheatham TE 3rd, Darden T, Gohlke H, Luo R, et al. (2005) The Amber biomolecular simulation programs. J Comput Chem 26: 1668-1688.
31. Ryckaert JP, Ciccotti G, Berendsen HJC, (1977) Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. Journal of Computational Physics 23: 327-341.
32. Berendsen HJC, Postma JPM, van Gunsteren WF, DiNola A, Haak JR, (1984) Molecular dynamics with coupling to an external bath. The Journal of Chemical Physics 81: 3684-3690.
33. Humphrey W, Dalke A, Schulten K, (1996) VMD: Visual molecular dynamics. Journal of Molecular Graphics 14: 33-37.