NeuroNames: An ontology for the braininfo portal to neuroscience on the web

Neuroinformatics

Volumn 10, Issue 1, 2012, Pages 97-114

  Bowden, Douglas M ^a   Song, Evan ^a   Kosheleva, Julia ^a   Dubach, Mark F ^a  

^a UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

Author keywords

BrainInfo; Neuroanatomical nomenclature; NeuroNames; Ontology; Web portal; Web search

Indexed keywords

ARTICLE; INFORMATION RETRIEVAL; INTERNET; LIBRARY; LINGUISTICS; MEDICAL INFORMATION SYSTEM; METHODOLOGY; NEUROANATOMY; NEUROSCIENCE; NOMENCLATURE; UNITED STATES;

INFORMATION STORAGE AND RETRIEVAL; INTERNET; NATIONAL LIBRARY OF MEDICINE (U.S.); NEUROANATOMY; NEUROSCIENCES; TERMINOLOGY AS TOPIC; UNIFIED MEDICAL LANGUAGE SYSTEM; UNITED STATES; VOCABULARY, CONTROLLED;

EID: 84859886954     PISSN: 15392791     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12021-011-9128-8     Document Type: Article

References (38)

1. Anthoney T. R. (1994). Neuroanatomy and the neurologic exam: a thesaurus of synonyms similar sounding non-synonyms and terms of variable meaning. Boca Raton: CRC.
2. Arbib M. A. & Amari S.-I. (1988) (Eds.) Dynamic interactions in neural networks: models and data vol. 1. Research notes in neural computing. Springer New York
3. Berners-Lee T. Hendler J. & Lassila O. (2001). The semantic web. Scientific American 284(5) 34-44.
4. Bowden D. M. (2000). Atlases for informatics and quantitative neuroanatomy. In R. F. Martin & D. M. Bowden (Eds.) Primate brain maps. Amsterdam: Elsevier Science.
5. Bowden D. M. & Dubach M. F. (2004). Neuroanatomical nomenclature and ontology Chapter 2. In S. Koslow & S. Subramaniam (Eds.) Databasing the brain: Data to knowledge. New York: Wiley.
6. Bowden D. M. & Martin R. F. (1995). NeuroNames brain hierarchy. Neuroimage 2 63-83.
7. BrainInfo (2010a) NeuroMaps Mapper: Macaque University of Washington Seattle USA http://neuromaps.braininfo.org/cgi-bin/NeuroMaps.py?species=Macaque (accessed 19 October 2010
8. BrainInfo (2010b) Location in English Hierarchy of Brain Structures University of Washington Seattle USA http://braininfo.rprc. washington.edu/ whereisit.aspx?language=0&requestID=ID21 &parentID= ID3111&originalID=ID21 (accessed 30 September 2010
9. BrainInfo (2010c) NeuroNames Ontology of Mammalian Neuroanatomy: NN2010 University of Washington Seattle USA,http://braininfo.rprc.washington.edu/Nnont. aspx (accessed 5 September 2010)
10. BrainInfo (2010d) Arcuate nucleus of the hypothalamus University of Washington Seattle USA,http://braininfo.rprc.washington.edu/Search.aspx? searchstring=arcuate%20nucleus&fromwhere=main (accessed 31 March 2011)
11. Bug W. J. Ascoli G. A. Grethe J. S. Gupta A. Fennema-Notestine C. Laird A. R. et al. (2008). The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. Neuroinform 6 175-194.
12. Carpenter M. B. & Sutin J. (1983). Human Neuroanatomy. Baltimore: Williams & Wilkins.
13. CRBS (2010) Center for Research in Biological Systems University of California at San Diego http://crbs.ucsd.edu/(accessed 8 September 2010
14. Crosby E. C. Humphrey T. & Lauer E. W. (1962). Correlative anatomy of the nervous system. New York: Macmillan.
15. Dong H. W. (2004). Allen Reference Atlas Allen Institute for Brain Science Seattle http://mouse.brain-map.org/atlas/index.html (accessed 31 March 2011
16. Google (2011). Google Mountainview CA http://google.com (accessed 20 April 2011
17. Hof P. R. Young W. G. Bloom F. E. Belichenko P. V. & Celio M. R. (2000). Comparative cytoarchitectonic Atlas of the C57BL/6 and 129/Sv mouse brains. Amsterdam: Elsevier.
18. IANC. (1983). Nomina anatomica international anatomical nomenclature committee. Baltimore: Williams & Wilkins.
19. INCF (2011). International neuroinformatics coordinating facility Karolinska Institute and Royal Institute of Technology Stockholm Sweden. http://www.incf.org (accessed 11 June 2011
20. Kahle W. & Frotscher M. (2001). Taschenatlas der Anatomie vol. 3 nervensystem und sinnesorgane. Stuttgart: Georg Thieme Verlag.
21. NeuroLex (2011). NeuroLex: The Neuroscience Lexicon University of California at San Diego CA http://neurolex.org/wiki/Main-Page (accessed 9 June 2011
22. NIF (2011). Neuroscience Information Framework version 3.5.
23. University of California at San Diego http://www.neuinfo.org/about/index. shtm (accessed 30 May 2011
24. NLM (2010). Medical Subject Headings National Library of Medicine http://www.nlm.nih.gov/mesh/meshhome.html (accessed 6 October 2010
25. Ono M. Kubik S. & Abernathey C. D. (1990). Atlas of the cerebral sulci. Stuttgart: Thieme.
26. Paxinos G. (Ed.). (1990). The human nervous system. San Diego: Academic.
27. Paxinos G. & Franklin K. B. J. (2001). The mouse brain in stereotaxic coordinates (2nd ed.). San Diego: Academic.
28. PubMed (2009) PubMed National Library of Medicine Bethesda MD. http://pubmed.gov (accessed 20 April 2011)
29. Puelles L. Martinez-de-la-Torre M. Paxinos G. Watson C. & Martinez S. (2007). The chick brain in stereotaxic coordinates. An atlas featuring neuromeres and mammalian homologies. San Diego: Elsevier Academic.
30. Riley H. A. (1943). An atlas of the basal ganglia brain stem and spinal cord. Baltimore: Williams & Wilkins.
31. Schiebler T. H. Schmidt W. & Zilles K. (1999). Anatomie 8. Auflage. Berlin: Springer.
32. Stephan H. (1975). Allocortex. In W. Bargmann (Ed.) Handbuch der mikroskopischen Anatomie des Menschen Vol. 4 Nervensystem Part 9. Berlin: Springer.
33. Swanson L. W. (2000). What is the brain? Trends in Neuroscience 23 519-527.
34. Swanson L. W. (2004). Brain maps: Structure of the rat brain (3rd ed.). Oxford: Elsevier Academic.
35. UMLS (2011). Unified Medical Language System National Library of Medicine Bethesda Maryland http://www.nlm.nih.gov/research/umls/new-users/index.html (accessed 31 March 2011
36. Wikipedia (2010a). Ontology (information science) http://en.wikipedia. org/wiki/Ontology-(information-science) (accessed 31 March 2011
37. Wikipedia (2010b). List of regions in the human brain. http://en. wikipedia.org/wiki/Talk:List-of-regions-in-the-human-brain (accessed 6 October 2010
38. Wikipedia (2011). Wikipedia Wikipedia.com San Francisco CA http://wikipedia.org (accessed 20 April 2011).