On the formation of the double helix between adenine single strands at acidic pH from synchrotron radiation circular dichroism experiments

Biopolymers

Volumn 97, Issue 7, 2012, Pages 550-557

  Holm, Anne I S ^a   Munksgaard Nielsen, Lisbeth ^a   Vrønning Hoffmann, Søren ^a   Brøndsted Nielsen, Steen ^a  

^a AARHUS UNIVERSITY   (Denmark)

Author keywords

circular dichroism; DNA; vacuum ultraviolet

Indexed keywords

ACIDIC PH; COMPLEXATION MECHANISMS; COULOMB REPULSIONS; DOUBLE HELIX; DOUBLE HELIX FORMATION; DOUBLE STRANDS; FUNCTION OF TIME; I-MOTIF; PROTONATED; REFERENCE SPECTRUM; SAMPLE PREPARATION; SHEDDING LIGHT; SPECTRAL DIFFERENCES; SPECTRAL FEATURE; SYNCHROTRON RADIATION CIRCULAR DICHROISMS; VACUUM ULTRAVIOLETS; WAVELENGTH REGIONS;

DNA; PROTONATION; SYNCHROTRON RADIATION; VACUUM;

DICHROISM;

DOUBLE STRANDED DNA; SINGLE STRANDED DNA;

ARTICLE; CHEMICAL STRUCTURE; CIRCULAR DICHROISM; DNA HELIX; PH; SYNCHROTRON RADIATION; TEMPERATURE; ULTRAVIOLET RADIATION;

ACIDS; ADENINE; CIRCULAR DICHROISM; HYDROGEN-ION CONCENTRATION; SYNCHROTRONS; TEMPERATURE;

EID: 84859775169     PISSN: 00063525     EISSN: 10970282     Source Type: Journal    
DOI: 10.1002/bip.22038     Document Type: Article

References (37)

1. Bath, J.,;, Turberfield, A. J., Nat Nanotechnol 2007, 2, 275-284.
2. Pitchiaya, S.,;, Krishnan, Y., Chem Soc Rev 2006, 35, 1111-1121.
3. Samori, B.,;, Zuccheri, G., Angew Chem Int Ed Engl 2005, 44, 1166-1181.
4. Seeman, N. C., Biochemistry 2003, 42, 7259-7269.
5. Chakraborty, S.,;, Sharma, S.,;, Maiti, P. K.,;, Krishnan, Y., Nucleic Acid Res 2009, 37, 2810-2817.
6. Rich, A.,;, Davies, D. R.,;, Crick, F. H. C.,;, Watson, J. D., J Mol Biol 1961, 3, 71-86.
7. Luzzati, V.,;, Mathis, A.,;, Masson, F.,;, Witz, F., J Mol Biol 1964, 10, 28-41.
8. Fresco, J. R.,;, Klemperer, E., Ann N Y Acad Sci 1959, 81, 730-741.
9. Leng, M.,;, Felsenfeld, G., J Mol Biol 1966, 15, 455-466.
10. Applequist, J.,;, Damle, V., J Am Chem Soc 1966, 88, 3895-3900.
11. Casassas, E.,;, Tauler, R.,;, Marques, I., Macromolecules 1994, 27, 1729-1737.
12. Holcomb, D. N.,;, Tinoco, I. J., Biopolymers 1965, 3, 121-133.
13. Warshaw, M. M.,;, Bush, C. A.,;, Tinoco, I. J., Biochem Biophys Res Commun 1965, 18, 633-638.
14. Sarkar, P. K.,;, Yang, J. T., J Biol Chem 1965, 240, 2088-2093.
15. Poland, D.,;, Vournakis, J. N.,;, Scheraga, H. A., Biopolymers 1966, 4, 223-235.
16. Michelson, A. M.,;, Ulbricht, T. L. V.,;, Emerson, T. R.,;, Swan, R. J., Nature 1966, 209, 873-874.
17. van Holde, K. E.,;, Brahms, J.,;, Michelson, A. M., J Mol Biol 1965, 12, 726-739.
18. Brahms, J.,;, Michelson, A. M.,;, van Holde, K. E., J Mol Biol 1966, 15, 467-488.
19. Hashizume, H.,;, Imahori, I. J., Biochemistry 1967, 61, 738-749.
20. Hruska, F. E.,;, Danyluk, S. S., J Am Chem Soc 1968, 90, 3266-3267.
21. Chan, S. I.,;, Nelson, J. H., J Am Chem Soc 1969, 91, 168-183.
22. Lerner, D. B.,;, Kearns, D. R., Biopolymers 1981, 20, 803-816.
23. Kadhane, U.,;, Holm, A. I. S.,;, Hoffmann, S. V.,;, Brøndsted Nielsen, S., Phys Rev E 2008, 77, 021901.
24. Holm, A. I. S.,;, Nielsen, L. M.,;, Hoffmann, S. V.,;, Brøndsted Nielsen, S., Biopolymers 2010, 93, 429-433.
25. Holm, A. I. S.,;, Nielsen, L. M.,;, Hoffmann, S. V.,;, Brøndsted Nielsen, S., Phys Chem Chem Phys 2010, 12, 3426-3430.
26. Wallace, B. A., J Synchrotron Radiat 2000, 7, 289-295.
27. Jones, G. R.,;, Clarke, D. T., Faraday Discuss 2004, 126, 223-236.
28. Holm, A. I. S.,;, Nielsen, L. M.,;, Hoffmann, S. V.,;, Brøndsted Nielsen, S., Phys Chem Chem Phys 2010, 12, 9581-9596.
29. Johnson, W. C., Annu Rev Phys Chem 1978, 29, 93-114.
30. Sutherland, J. C.,;, Lin, B.,;, Mugavero, J.,;, Trunk, J.,;, Tomasz, M.,;, Santella, R.,;, Marky, L.,;, Breslauer, K., J Photochem Photobiol 1986, 44, 295-301.
31. Miles, A. J.,;, Hoffmann, S. V.,;, Tao, Y.,;, Janes, R. W.,;, Wallace, B. A., Spectroscopy 2007, 21, 245-255.
32. Miles, A. J.,;, Janes, R. W.,;, Brown, A.,;, Clarke, D. T.,;, Sutherland, J. C.,;, Tao, Y.,;, Wallace, B. A.,;, Hoffmann, S. V., J Synchrotron Radiat 2008, 15, 420-422.
33. Lees, J.,;, Smith, B.,;, Wien, F.,;, Miles, A.,;, Wallace, B. A., Anal Biochem 2004, 332, 285-289.
34. Integrated DNA Technologies, Inc. Available at:.
35. Davis, J. T., Angew Chem Int Ed Engl 2004, 43, 668-698.
36. Marsh, R. E.,;, Bierstedt, R.,;, Eichhorn, E. L., Acta Crystallogr 1962, 15, 310-316.
37. Gehring, K.,;, Leroy, J. L.,;, Gueron, M., Nature 1993, 363, 561-565.