-
1
-
-
78651486207
-
Insulation of a synthetic hydrogen metabolism circuit in bacteria
-
Agapakis C.M., Ducat D.C., Boyle P.M., Wintermute E.H., Way J.C., Silver P.A. Insulation of a synthetic hydrogen metabolism circuit in bacteria. J. Biol. Eng. 2010, 4:3.
-
(2010)
J. Biol. Eng.
, vol.4
, pp. 3
-
-
Agapakis, C.M.1
Ducat, D.C.2
Boyle, P.M.3
Wintermute, E.H.4
Way, J.C.5
Silver, P.A.6
-
2
-
-
67650391695
-
Synthetic biology: exploring and exploiting genetic modularity through the design of novel biological networks
-
Agapakis C.M., Silver P.A. Synthetic biology: exploring and exploiting genetic modularity through the design of novel biological networks. Mol. Biosyst. 2009, 5:704-713.
-
(2009)
Mol. Biosyst.
, vol.5
, pp. 704-713
-
-
Agapakis, C.M.1
Silver, P.A.2
-
3
-
-
34548856538
-
Rational design of memory in eukaryotic cells
-
Ajo-Franklin C.M., Drubin D.A., Eskin J.A., Gee E.P., Landgraf D., Phillips I., Silver P.A. Rational design of memory in eukaryotic cells. Genes Dev. 2007, 21:2271-2276.
-
(2007)
Genes Dev.
, vol.21
, pp. 2271-2276
-
-
Ajo-Franklin, C.M.1
Drubin, D.A.2
Eskin, J.A.3
Gee, E.P.4
Landgraf, D.5
Phillips, I.6
Silver, P.A.7
-
4
-
-
52949116414
-
Assembling materials with DNA as the guide
-
Aldaye F.A., Palmer A.L., Sleiman H.F. Assembling materials with DNA as the guide. Science (New York, NY) 2008, 321:1795-1799.
-
(2008)
Science (New York, NY)
, vol.321
, pp. 1795-1799
-
-
Aldaye, F.A.1
Palmer, A.L.2
Sleiman, H.F.3
-
5
-
-
24644515752
-
Tuning genetic control through promoter engineering
-
Alper H., Fischer C., Nevoigt E., Stephanopoulos G. Tuning genetic control through promoter engineering. Proc. Natl. Acad. Sci. USA 2005, 102:12678-12683.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 12678-12683
-
-
Alper, H.1
Fischer, C.2
Nevoigt, E.3
Stephanopoulos, G.4
-
6
-
-
33845442201
-
Engineering yeast transcription machinery for improved ethanol tolerance and production
-
Alper H., Moxley J., Nevoigt E., Fink G.R., Stephanopoulos G. Engineering yeast transcription machinery for improved ethanol tolerance and production. Science 2006, 314:1565-1568.
-
(2006)
Science
, vol.314
, pp. 1565-1568
-
-
Alper, H.1
Moxley, J.2
Nevoigt, E.3
Fink, G.R.4
Stephanopoulos, G.5
-
7
-
-
33847083318
-
Global transcription machinery engineering: a new approach for improving cellular phenotype
-
Alper H., Stephanopoulos G. Global transcription machinery engineering: a new approach for improving cellular phenotype. Metab. Eng. 2007, 9:258-267.
-
(2007)
Metab. Eng.
, vol.9
, pp. 258-267
-
-
Alper, H.1
Stephanopoulos, G.2
-
8
-
-
77649305316
-
BglBricks: A flexible standard for biological part assembly
-
Anderson J.C., Dueber J.E., Leguia M., Wu G.C., Goler J.A., Arkin A.P., Keasling J.D. BglBricks: A flexible standard for biological part assembly. J. Biol. Eng. 2010, 4:1.
-
(2010)
J. Biol. Eng.
, vol.4
, pp. 1
-
-
Anderson, J.C.1
Dueber, J.E.2
Leguia, M.3
Wu, G.C.4
Goler, J.A.5
Arkin, A.P.6
Keasling, J.D.7
-
9
-
-
34547916832
-
Environmental signal integration by a modular AND gate
-
Anderson J.C., Voigt C., Arkin A.P. Environmental signal integration by a modular AND gate. Mol. Syst. Biol. 2007, 3:133.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 133
-
-
Anderson, J.C.1
Voigt, C.2
Arkin, A.P.3
-
10
-
-
0842268067
-
A new algorithm for RNA secondary structure design
-
Andronescu M., Fejes A.P., Hutter F., Hoos H.H., Condon A. A new algorithm for RNA secondary structure design. J. Mol. Biol. 2004, 336:607-624.
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 607-624
-
-
Andronescu, M.1
Fejes, A.P.2
Hutter, F.3
Hoos, H.H.4
Condon, A.5
-
11
-
-
0000583594
-
Perspectives on ruminant nutrition and metabolism I. Metabolism in the rumen
-
Annison E.F., Bryden W.L. Perspectives on ruminant nutrition and metabolism I. Metabolism in the rumen. Nutr. Res. Rev. 1998, 11:173-198.
-
(1998)
Nutr. Res. Rev.
, vol.11
, pp. 173-198
-
-
Annison, E.F.1
Bryden, W.L.2
-
12
-
-
33845579099
-
Fast, cheap and somewhat in control
-
Arkin A.P., Fletcher D.A. Fast, cheap and somewhat in control. Genome Biol. 2006, 7:114.
-
(2006)
Genome Biol.
, vol.7
, pp. 114
-
-
Arkin, A.P.1
Fletcher, D.A.2
-
13
-
-
79952348850
-
A synthetic library of RNA control modules for predictable tuning of gene expression in yeast
-
Babiskin A.H., Smolke C.D. A synthetic library of RNA control modules for predictable tuning of gene expression in yeast. Mol. Syst. Biol. 2011, 7:471.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 471
-
-
Babiskin, A.H.1
Smolke, C.D.2
-
14
-
-
40849100220
-
Using engineered scaffold interactions to reshape MAP kinase pathway signaling dynamics
-
Bashor C.J., Helman N.C., Yan S., Lim W.A. Using engineered scaffold interactions to reshape MAP kinase pathway signaling dynamics. Science 2008, 319:1539-1543.
-
(2008)
Science
, vol.319
, pp. 1539-1543
-
-
Bashor, C.J.1
Helman, N.C.2
Yan, S.3
Lim, W.A.4
-
15
-
-
78649252743
-
Grand challenge commentary: transforming biosynthesis into an information science
-
Bayer T.S. Grand challenge commentary: transforming biosynthesis into an information science. Nat. Chem. Biol. 2010, 6:859-861.
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 859-861
-
-
Bayer, T.S.1
-
16
-
-
21444457242
-
Programmable ligand-controlled riboregulators of eukaryotic gene expression
-
Bayer T.S., Smolke C.D. Programmable ligand-controlled riboregulators of eukaryotic gene expression. Nat. Biotechnol. 2005, 23:337-343.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 337-343
-
-
Bayer, T.S.1
Smolke, C.D.2
-
17
-
-
70149113922
-
Synthesis of methyl halides from biomass using engineered microbes
-
Bayer T.S., Widmaier D.M., Temme K., Mirsky E.A., Santi D.V., Voigt C.A. Synthesis of methyl halides from biomass using engineered microbes. J. Am. Chem. Soc. 2009, 131:6508-6515.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 6508-6515
-
-
Bayer, T.S.1
Widmaier, D.M.2
Temme, K.3
Mirsky, E.A.4
Santi, D.V.5
Voigt, C.A.6
-
18
-
-
0014193191
-
Regulation of the lac operon. Recent studies on the regulation of lactose metabolism in Escherichia coli support the operon model
-
Beckwith J.R. Regulation of the lac operon. Recent studies on the regulation of lactose metabolism in Escherichia coli support the operon model. Science 1967, 156:597-604.
-
(1967)
Science
, vol.156
, pp. 597-604
-
-
Beckwith, J.R.1
-
19
-
-
66249084560
-
Design principles for riboswitch function
-
Beisel C.L., Smolke C.D. Design principles for riboswitch function. PLoS Comput. Biol. 2009, 5:e1000363.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Beisel, C.L.1
Smolke, C.D.2
-
20
-
-
77952529484
-
Cloning whole bacterial genomes in yeast
-
Benders, G.A., Noskov, V.N., Denisova, E.A., Lartigue, C., Gibson, D.G., Assad-Garcia, N., Chuang, R.-Y., Carrera, W., Moodie, M., Algire, M.A., Phan, Q., Alperovich, N., Vashee, S., Merryman, C., Venter, J.C., Smith, H.O., Glass, J.I., Hutchison, C.A., Cloning whole bacterial genomes in yeast. Nucl. Acids Res., 2010.
-
(2010)
Nucl. Acids Res.
-
-
Benders, G.A.1
Noskov, V.N.2
Denisova, E.A.3
Lartigue, C.4
Gibson, D.G.5
Assad-Garcia, N.6
Chuang, R.-Y.7
Carrera, W.8
Moodie, M.9
Algire, M.A.10
Phan, Q.11
Alperovich, N.12
Vashee, S.13
Merryman, C.14
Venter, J.C.15
Smith, H.O.16
Glass, J.I.17
Hutchison, C.A.18
-
22
-
-
67650671869
-
Harnessing nature's toolbox: regulatory elements for synthetic biology
-
Boyle P.M., Silver P.A. Harnessing nature's toolbox: regulatory elements for synthetic biology. J. Roy. Soc., Interface/Roy. Soc. 2009, 6(Suppl. 4):S535-S546.
-
(2009)
J. Roy. Soc., Interface/Roy. Soc.
, vol.6
, Issue.SUPPL. 4
-
-
Boyle, P.M.1
Silver, P.A.2
-
24
-
-
36849005857
-
Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium
-
Brenner K., Karig D.K., Weiss R., Arnold F.H. Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium. Proc. Natl. Acad. Sci. USA 2007, 104:17300-17304.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 17300-17304
-
-
Brenner, K.1
Karig, D.K.2
Weiss, R.3
Arnold, F.H.4
-
25
-
-
49049105130
-
Engineering microbial consortia: a new frontier in synthetic biology
-
Brenner K., You L., Arnold F.H. Engineering microbial consortia: a new frontier in synthetic biology. Trends Biotechnol. 2008, 26:483-489.
-
(2008)
Trends Biotechnol.
, vol.26
, pp. 483-489
-
-
Brenner, K.1
You, L.2
Arnold, F.H.3
-
26
-
-
33644832381
-
In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production
-
Bro C., Regenberg B., Förster J., Nielsen J. In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production. Metab. Eng. 2006, 8:102-111.
-
(2006)
Metab. Eng.
, vol.8
, pp. 102-111
-
-
Bro, C.1
Regenberg, B.2
Förster, J.3
Nielsen, J.4
-
27
-
-
78049460641
-
Improved vanillin production in baker's yeast through in silico design
-
Brochado A.R., Matos C., Møller B.L., Hansen J., Mortensen U.H., Patil K.R. Improved vanillin production in baker's yeast through in silico design. Microb. Cell Factor. 2010, 9:84.
-
(2010)
Microb. Cell Factor.
, vol.9
, pp. 84
-
-
Brochado, A.R.1
Matos, C.2
Møller, B.L.3
Hansen, J.4
Mortensen, U.H.5
Patil, K.R.6
-
28
-
-
0242487787
-
Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
-
Burgard A., Pharkya P., Maranas C. Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization. Biotechnol. Bioeng. 2003, 84:647-657.
-
(2003)
Biotechnol. Bioeng.
, vol.84
, pp. 647-657
-
-
Burgard, A.1
Pharkya, P.2
Maranas, C.3
-
29
-
-
77957679279
-
Tracking, tuning, and terminating microbial physiology using synthetic riboregulators
-
Callura J.M., Dwyer D.J., Isaacs F.J., Cantor C.R., Collins J.J. Tracking, tuning, and terminating microbial physiology using synthetic riboregulators. Proc. Natl. Acad. Sci. USA 2010, 107:15898-15903.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 15898-15903
-
-
Callura, J.M.1
Dwyer, D.J.2
Isaacs, F.J.3
Cantor, C.R.4
Collins, J.J.5
-
30
-
-
71849108194
-
-
Harvard University Press, Cambridge, MA
-
Carlson R.H. Biology is Technology: The Promise, Peril, and New Business of Engineering Life 2010, Harvard University Press, Cambridge, MA.
-
(2010)
Biology is Technology: The Promise, Peril, and New Business of Engineering Life
-
-
Carlson, R.H.1
-
32
-
-
0018776894
-
Hydroperoxide metabolism in mammalian organs
-
Chance B., Sies H., Boveris A. Hydroperoxide metabolism in mammalian organs. Physiol. Rev. 1979, 59:527-605.
-
(1979)
Physiol. Rev.
, vol.59
, pp. 527-605
-
-
Chance, B.1
Sies, H.2
Boveris, A.3
-
33
-
-
10844257474
-
Building programmable jigsaw puzzles with RNA
-
Chworos A., Severcan I., Koyfman A.Y., Weinkam P., Oroudjev E., Hansma H.G., Jaeger L. Building programmable jigsaw puzzles with RNA. Science 2004, 306:2068-2072.
-
(2004)
Science
, vol.306
, pp. 2068-2072
-
-
Chworos, A.1
Severcan, I.2
Koyfman, A.Y.3
Weinkam, P.4
Oroudjev, E.5
Hansma, H.G.6
Jaeger, L.7
-
34
-
-
43749102294
-
Enhancement of cell type specificity by quantitative modulation of a chimeric ligand
-
Cironi P., Swinburne I.A., Silver P.A. Enhancement of cell type specificity by quantitative modulation of a chimeric ligand. J. Biol. Chem. 2008, 283:8469-8476.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 8469-8476
-
-
Cironi, P.1
Swinburne, I.A.2
Silver, P.A.3
-
36
-
-
36249017917
-
Programming gene expression with combinatorial promoters
-
Cox R.S., Surette M.G., Elowitz M.B. Programming gene expression with combinatorial promoters. Mol. Syst. Biol. 2007, 3:145.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 145
-
-
Cox, R.S.1
Surette, M.G.2
Elowitz, M.B.3
-
37
-
-
84859769923
-
Design construction and characterization of a set of insulated bacterial promoters
-
Davis, J.H., Rubin, A.J., Sauer, R.T., Design, construction and characterization of a set of insulated bacterial promoters. Nucl. Acids Res., 2010.
-
(2010)
Nucl. Acids Res.
-
-
Davis, J.H.1
Rubin, A.J.2
Sauer, R.T.3
-
38
-
-
23144432213
-
Optimality and evolutionary tuning of the expression level of a protein
-
Dekel E., Alon U. Optimality and evolutionary tuning of the expression level of a protein. Nature 2005, 436:588-592.
-
(2005)
Nature
, vol.436
, pp. 588-592
-
-
Dekel, E.1
Alon, U.2
-
39
-
-
79960697001
-
Organization of intracellular reactions with rationally designed RNA assemblies
-
Delebecque C.J., Lindner A.B., Silver P.A., Aldaye F.A. Organization of intracellular reactions with rationally designed RNA assemblies. Science (New York, NY) 2011, 333:470-474.
-
(2011)
Science (New York, NY)
, vol.333
, pp. 470-474
-
-
Delebecque, C.J.1
Lindner, A.B.2
Silver, P.A.3
Aldaye, F.A.4
-
41
-
-
77953642931
-
High-throughput metabolic engineering: advances in small-molecule screening and selection
-
Dietrich J.A., McKee A.E., Keasling J.D. High-throughput metabolic engineering: advances in small-molecule screening and selection. Annu. Rev. Biochem. 2010, 79:563-590.
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 563-590
-
-
Dietrich, J.A.1
McKee, A.E.2
Keasling, J.D.3
-
42
-
-
77953642931
-
High-throughput metabolic engineering: advances in small-molecule screening and selection
-
Dietrich J.A., Mckee A.E., Keasling J.D. High-throughput metabolic engineering: advances in small-molecule screening and selection. Annu. Rev. Biochem. 2010, 79:563-590.
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 563-590
-
-
Dietrich, J.A.1
Mckee, A.E.2
Keasling, J.D.3
-
43
-
-
69849088255
-
Rapid prototyping of 3D DNA-origami shapes with caDNAno
-
Douglas S.M., Marblestone A.H., Teerapittayanon S., Vazquez A., Church G.M., Shih W.M. Rapid prototyping of 3D DNA-origami shapes with caDNAno. Nucl. Acids Res. 2009, 37:5001-5006.
-
(2009)
Nucl. Acids Res.
, vol.37
, pp. 5001-5006
-
-
Douglas, S.M.1
Marblestone, A.H.2
Teerapittayanon, S.3
Vazquez, A.4
Church, G.M.5
Shih, W.M.6
-
45
-
-
68449088806
-
Synthetic protein scaffolds provide modular control over metabolic flux
-
Dueber J.E., Wu G.C., Malmirchegini G.R., Moon T.S., Petzold C.J., Ullal A.V., Prather K.L.J., Keasling J.D. Synthetic protein scaffolds provide modular control over metabolic flux. Nat. Biotechnol. 2009, 27:753-759.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 753-759
-
-
Dueber, J.E.1
Wu, G.C.2
Malmirchegini, G.R.3
Moon, T.S.4
Petzold, C.J.5
Ullal, A.V.6
Prather, K.L.J.7
Keasling, J.D.8
-
46
-
-
45249103536
-
A co-fermentation strategy to consume sugar mixtures effectively
-
Eiteman M.A., Lee S.A., Altman E. A co-fermentation strategy to consume sugar mixtures effectively. J. Biol. Eng. 2008, 2:3.
-
(2008)
J. Biol. Eng.
, vol.2
, pp. 3
-
-
Eiteman, M.A.1
Lee, S.A.2
Altman, E.3
-
47
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz M.B., Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature 2000, 403:335-338.
-
(2000)
Nature
, vol.403
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
48
-
-
28544451327
-
Foundations for engineering biology
-
Endy D. Foundations for engineering biology. Nature 2005, 438:449-453.
-
(2005)
Nature
, vol.438
, pp. 449-453
-
-
Endy, D.1
-
49
-
-
77952135283
-
Short N-terminal sequences package proteins into bacterial microcompartments
-
Fan C., Cheng S., Liu Y., Escobar C.M., Crowley C.S., Jefferson R.E., Yeates T.O., Bobik T.A. Short N-terminal sequences package proteins into bacterial microcompartments. Proc. Natl. Acad. Sci. USA 2010, 107:7509-7514.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 7509-7514
-
-
Fan, C.1
Cheng, S.2
Liu, Y.3
Escobar, C.M.4
Crowley, C.S.5
Jefferson, R.E.6
Yeates, T.O.7
Bobik, T.A.8
-
50
-
-
0021112706
-
The synthesis of ATP by the membrane-bound ATP synthase complex from medium 32Pi under completely uncoupled conditions
-
Feldman R.I., Sigman D.S. The synthesis of ATP by the membrane-bound ATP synthase complex from medium 32Pi under completely uncoupled conditions. J. Biol. Chem. 1983, 258:12178-12183.
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 12178-12183
-
-
Feldman, R.I.1
Sigman, D.S.2
-
52
-
-
77951125481
-
Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity
-
Fendt S.-M., Buescher J.M., Rudroff F., Picotti P., Zamboni N., Sauer U. Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity. Mol. Syst. Biol. 2010, 6:356.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 356
-
-
Fendt, S.-M.1
Buescher, J.M.2
Rudroff, F.3
Picotti, P.4
Zamboni, N.5
Sauer, U.6
-
53
-
-
77953584054
-
Creation of a bacterial cell controlled by a c
-
Gibson, D.G., Glass, J.I., Lartigue, C., Noskov, V.N., Chuang, R.-Y., Algire, M.A., Benders, G.A., Montague, M.G., Ma, L., Moodie, M.M., Merryman, C., Vashee, S., Krishnakumar, R., Assad-Garcia, N., Andrews-Pfannkoch, C., Denisova, E.A., Young, L., Qi, Z.-Q., Segall-Shapiro, T.H., Calvey, C.H., Parmar, P.P., Hutchison, C.A., Smith, H.O., Venter, J.C., Creation of a bacterial cell controlled by a chemically synthesized genome. Science, 2010.
-
-
-
Gibson, D.G.1
Glass, J.I.2
Lartigue, C.3
Noskov, V.N.4
Chuang, R.-Y.5
Algire, M.A.6
Benders, G.A.7
Montague, M.G.8
Ma, L.9
Moodie, M.M.10
Merryman, C.11
Vashee, S.12
Krishnakumar, R.13
Assad-Garcia, N.14
Andrews-Pfannkoch, C.15
Denisova, E.A.16
Young, L.17
Qi, Z.-Q.18
Segall-Shapiro, T.H.19
Calvey, C.H.20
Parmar, P.P.21
Hutchison, C.A.22
Smith, H.O.23
Venter, J.C.24
more..
-
54
-
-
77949493815
-
An engineered yeast efficiently secreting penicillin
-
Gidijala L., Kiel J.A.K.W., Douma R.D., Seifar R.M., van Gulik W.M., Bovenberg R.A.L., Veenhuis M., van der Klei I.J. An engineered yeast efficiently secreting penicillin. PLoS ONE 2009, 4:e8317.
-
(2009)
PLoS ONE
, vol.4
-
-
Gidijala, L.1
Kiel, J.A.K.W.2
Douma, R.D.3
Seifar, R.M.4
van Gulik, W.M.5
Bovenberg, R.A.L.6
Veenhuis, M.7
van der Klei, I.J.8
-
55
-
-
33947256880
-
Cellulosomes: microbial nanomachines that display plasticity in quaternary structure
-
Gilbert H.J. Cellulosomes: microbial nanomachines that display plasticity in quaternary structure. Mol. Microbiol. 2007, 63:1568-1576.
-
(2007)
Mol. Microbiol.
, vol.63
, pp. 1568-1576
-
-
Gilbert, H.J.1
-
57
-
-
78649985789
-
The emerging field of RNA nanotechnology
-
Guo P. The emerging field of RNA nanotechnology. Nat. Nanotechnol. 2010, 5:833-842.
-
(2010)
Nat. Nanotechnol.
, vol.5
, pp. 833-842
-
-
Guo, P.1
-
58
-
-
47249115376
-
Promoter library designed for fine-tuned gene expression in Pichia pastoris
-
Hartner F.S., Ruth C., Langenegger D., Johnson S.N., Hyka P., Lin-Cereghino G.P., Lin-Cereghino J., Kovar K., Cregg J.M., Glieder A. Promoter library designed for fine-tuned gene expression in Pichia pastoris. Nucl. Acids Res. 2008, 36:e76.
-
(2008)
Nucl. Acids Res.
, vol.36
-
-
Hartner, F.S.1
Ruth, C.2
Langenegger, D.3
Johnson, S.N.4
Hyka, P.5
Lin-Cereghino, G.P.6
Lin-Cereghino, J.7
Kovar, K.8
Cregg, J.M.9
Glieder, A.10
-
59
-
-
74049088689
-
Eukaryotic systems broaden the scope of synthetic biology
-
Haynes K.A., Silver P.A. Eukaryotic systems broaden the scope of synthetic biology. J. Cell Biol. 2009, 187:589-596.
-
(2009)
J. Cell Biol.
, vol.187
, pp. 589-596
-
-
Haynes, K.A.1
Silver, P.A.2
-
60
-
-
73149088132
-
Engineering static and dynamic control of synthetic pathways
-
Holtz W.J., Keasling J.D. Engineering static and dynamic control of synthetic pathways. Cell 2010, 140:19-23.
-
(2010)
Cell
, vol.140
, pp. 19-23
-
-
Holtz, W.J.1
Keasling, J.D.2
-
61
-
-
0032963341
-
In or out? Regulating nuclear transport
-
Hood J.K., Silver P.A. In or out? Regulating nuclear transport. Curr. Opin. Cell Biol. 1999, 11:241-247.
-
(1999)
Curr. Opin. Cell Biol.
, vol.11
, pp. 241-247
-
-
Hood, J.K.1
Silver, P.A.2
-
62
-
-
1542620016
-
Studies on cellulose fermentation: III. The culture and isolation for cellulose-decomposing bacteria from the rumen of cattle
-
Hungate R.E. Studies on cellulose fermentation: III. The culture and isolation for cellulose-decomposing bacteria from the rumen of cattle. J. Bacteriol. 1947, 53:631-645.
-
(1947)
J. Bacteriol.
, vol.53
, pp. 631-645
-
-
Hungate, R.E.1
-
63
-
-
0024297340
-
Three-dimensional structure of the tryptophan synthase alpha 2 beta 2 multienzyme complex from Salmonella typhimurium
-
Hyde C.C., Ahmed S.A., Padlan E.A., Miles E.W., Davies D.R. Three-dimensional structure of the tryptophan synthase alpha 2 beta 2 multienzyme complex from Salmonella typhimurium. J. Biol. Chem. 1988, 263:17857-17871.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 17857-17871
-
-
Hyde, C.C.1
Ahmed, S.A.2
Padlan, E.A.3
Miles, E.W.4
Davies, D.R.5
-
64
-
-
3042741121
-
Engineered riboregulators enable post-transcriptional control of gene expression
-
Isaacs F.J., Dwyer D.J., Ding C., Pervouchine D.D., Cantor C.R., Collins J.J. Engineered riboregulators enable post-transcriptional control of gene expression. Nat. Biotechnol. 2004, 22:841-847.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 841-847
-
-
Isaacs, F.J.1
Dwyer, D.J.2
Ding, C.3
Pervouchine, D.D.4
Cantor, C.R.5
Collins, J.J.6
-
65
-
-
34247612307
-
Multiple high-throughput analyses monitor the response of E. coli to perturbations
-
Ishii N., Nakahigashi K., Baba T., Robert M., Soga T., Kanai A., Hirasawa T., Naba M., Hirai K., Hoque A., Ho P.Y., Kakazu Y., Sugawara K., Igarashi S., Harada S., Masuda T., Sugiyama N., Togashi T., Hasegawa M., Takai Y., Yugi K., Arakawa K., Iwata N., Toya Y., Nakayama Y., Nishioka T., Shimizu K., Mori H., Tomita M. Multiple high-throughput analyses monitor the response of E. coli to perturbations. Science 2007, 316:593-597.
-
(2007)
Science
, vol.316
, pp. 593-597
-
-
Ishii, N.1
Nakahigashi, K.2
Baba, T.3
Robert, M.4
Soga, T.5
Kanai, A.6
Hirasawa, T.7
Naba, M.8
Hirai, K.9
Hoque, A.10
Ho, P.Y.11
Kakazu, Y.12
Sugawara, K.13
Igarashi, S.14
Harada, S.15
Masuda, T.16
Sugiyama, N.17
Togashi, T.18
Hasegawa, M.19
Takai, Y.20
Yugi, K.21
Arakawa, K.22
Iwata, N.23
Toya, Y.24
Nakayama, Y.25
Nishioka, T.26
Shimizu, K.27
Mori, H.28
Tomita, M.29
more..
-
66
-
-
54249116230
-
Genetic regulatory mechanisms in the synthesis of proteins
-
Jacob F., Monod J. Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol. 1961, 3:318-356.
-
(1961)
J. Mol. Biol.
, vol.3
, pp. 318-356
-
-
Jacob, F.1
Monod, J.2
-
67
-
-
78650594171
-
Engineering of a synthetic electron conduit in living cells
-
Jensen H.M., Albers A.E., Malley K.R., Londer Y.Y., Cohen B.E., Helms B.A., Weigele P., Groves J.T., Ajo-Franklin C.M. Engineering of a synthetic electron conduit in living cells. Proc. Natl. Acad. Sci. USA 2010.
-
(2010)
Proc. Natl. Acad. Sci. USA
-
-
Jensen, H.M.1
Albers, A.E.2
Malley, K.R.3
Londer, Y.Y.4
Cohen, B.E.5
Helms, B.A.6
Weigele, P.7
Groves, J.T.8
Ajo-Franklin, C.M.9
-
68
-
-
0034496492
-
Low-copy plasmids can perform as well as or better than high-copy plasmids for metabolic engineering of bacteria
-
Jones K.L., Kim S.W., Keasling J.D. Low-copy plasmids can perform as well as or better than high-copy plasmids for metabolic engineering of bacteria. Metab. Eng. 2000, 2:328-338.
-
(2000)
Metab. Eng.
, vol.2
, pp. 328-338
-
-
Jones, K.L.1
Kim, S.W.2
Keasling, J.D.3
-
69
-
-
78649716727
-
Manufacturing molecules through metabolic engineering
-
Keasling J.D. Manufacturing molecules through metabolic engineering. Science 2010, 330:1355-1358.
-
(2010)
Science
, vol.330
, pp. 1355-1358
-
-
Keasling, J.D.1
-
70
-
-
66149143984
-
Measuring the activity of BioBrick promoters using an in vivo reference standard
-
Kelly J.R., Rubin A.J., Davis J.H., Ajo-Franklin C.M., Cumbers J., Czar M.J., De Mora K., Glieberman A.L., Monie D.D., Endy D. Measuring the activity of BioBrick promoters using an in vivo reference standard. J. Biol. Eng. 3, 2009, 4.
-
(2009)
J. Biol. Eng.
, pp. 4
-
-
Kelly, J.R.1
Rubin, A.J.2
Davis, J.H.3
Ajo-Franklin, C.M.4
Cumbers, J.5
Czar, M.J.6
De Mora, K.7
Glieberman, A.L.8
Monie, D.D.9
Endy, D.10
-
71
-
-
70350443611
-
Systems-level engineering of nonfermentative metabolism in yeast
-
Kennedy C.J., Boyle P.M., Waks Z., Silver P.A. Systems-level engineering of nonfermentative metabolism in yeast. Genetics 2009, 183:385-397.
-
(2009)
Genetics
, vol.183
, pp. 385-397
-
-
Kennedy, C.J.1
Boyle, P.M.2
Waks, Z.3
Silver, P.A.4
-
72
-
-
57449090900
-
Defined spatial structure stabilizes a synthetic multispecies bacterial community
-
Kim H.J., Boedicker J.Q., Choi J.W., Ismagilov R.F. Defined spatial structure stabilizes a synthetic multispecies bacterial community. Proc. Natl. Acad. Sci. USA 2008, 105:18188-18193.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 18188-18193
-
-
Kim, H.J.1
Boedicker, J.Q.2
Choi, J.W.3
Ismagilov, R.F.4
-
73
-
-
79951492842
-
Complex function by design using spatially pre-structured synthetic microbial communities: degradation of pentachlorophenol in the presence of Hg(ii)
-
Kim H.J., Du W., Ismagilov R.F. Complex function by design using spatially pre-structured synthetic microbial communities: degradation of pentachlorophenol in the presence of Hg(ii). Integr. Biol. (Camb.) 2011, 3:126-133.
-
(2011)
Integr. Biol. (Camb.)
, vol.3
, pp. 126-133
-
-
Kim, H.J.1
Du, W.2
Ismagilov, R.F.3
-
74
-
-
44249111668
-
Application of functional genomics to pathway optimization for increased isoprenoid production
-
Kizer L., Pitera D.J., Pfleger B.F., Keasling J.D. Application of functional genomics to pathway optimization for increased isoprenoid production. Appl. Environ. Microbiol. 2008, 74:3229-3241.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 3229-3241
-
-
Kizer, L.1
Pitera, D.J.2
Pfleger, B.F.3
Keasling, J.D.4
-
75
-
-
78649677586
-
Environments that induce synthetic microbial ecosystems
-
Klitgord N., Segrè D. Environments that induce synthetic microbial ecosystems. PLoS Comput. Biol. 2010, 6:e1001002.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Klitgord, N.1
Segrè, D.2
-
76
-
-
34548857194
-
Idempotent vector design for standard assembly of biobricks
-
DSpace. MIT Artificial Intelligence Laboratory; MIT Synthetic Biology Working Group.
-
Knight, T., 2003. Idempotent vector design for standard assembly of biobricks. DSpace. MIT Artificial Intelligence Laboratory; MIT Synthetic Biology Working Group.
-
(2003)
-
-
Knight, T.1
-
77
-
-
0037432527
-
Sequence dependence of substrate recognition and cleavage by yeast RNase III
-
Lamontagne B., Ghazal G., Lebars I., Yoshizawa S., Fourmy D., Elela S.A. Sequence dependence of substrate recognition and cleavage by yeast RNase III. J. Mol. Biol. 2003, 327:985-1000.
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 985-1000
-
-
Lamontagne, B.1
Ghazal, G.2
Lebars, I.3
Yoshizawa, S.4
Fourmy, D.5
Elela, S.A.6
-
78
-
-
70349324305
-
Creating bacterial strains from genomes that have been cloned and engineered in yeast
-
Lartigue, C., Vashee, S., Algire, M., Chuang, R., Benders, G., Ma, L., Noskov, V., Denisova, E., Gibson, D., Assad-Garcia, N., Alperovich, N., Thomas, D., Merryman, C., Hutchison, C., Smith, H., Venter, J., Glass, J., Creating bacterial strains from genomes that have been cloned and engineered in yeast. Science, 2009.
-
(2009)
Science
-
-
Lartigue, C.1
Vashee, S.2
Algire, M.3
Chuang, R.4
Benders, G.5
Ma, L.6
Noskov, V.7
Denisova, E.8
Gibson, D.9
Assad-Garcia, N.10
Alperovich, N.11
Thomas, D.12
Merryman, C.13
Hutchison, C.14
Smith, H.15
Venter, J.16
Glass, J.17
-
79
-
-
33845318489
-
Uniqueness of the mechanism of protein import into the peroxisome matrix: transport of folded, co-factor-bound and oligomeric proteins by shuttling receptors
-
Léon S., Goodman J.M., Subramani S. Uniqueness of the mechanism of protein import into the peroxisome matrix: transport of folded, co-factor-bound and oligomeric proteins by shuttling receptors. Biochim. Biophys. Acta 2006, 1763:1552-1564.
-
(2006)
Biochim. Biophys. Acta
, vol.1763
, pp. 1552-1564
-
-
Léon, S.1
Goodman, J.M.2
Subramani, S.3
-
81
-
-
0038391517
-
Engineering a mevalonate pathway in Escherichia coli for production of terpenoids
-
Martin V.J., Pitera D.J., Withers S.T., Newman J.D., Keasling J.D. Engineering a mevalonate pathway in Escherichia coli for production of terpenoids. Nat. Biotechnol. 2003, 21:796-802.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 796-802
-
-
Martin, V.J.1
Pitera, D.J.2
Withers, S.T.3
Newman, J.D.4
Keasling, J.D.5
-
82
-
-
0028545587
-
Microbial attachment and feed digestion in the rumen
-
McAllister T.A., Bae H.D., Jones G.A., Cheng K.J. Microbial attachment and feed digestion in the rumen. J. Anim. Sci. 1994, 72:3004-3018.
-
(1994)
J. Anim. Sci.
, vol.72
, pp. 3004-3018
-
-
McAllister, T.A.1
Bae, H.D.2
Jones, G.A.3
Cheng, K.J.4
-
83
-
-
77956573977
-
Peroxisomes are required for efficient penicillin biosynthesis in Penicillium chrysogenum
-
Meijer W.H., Gidijala L., Fekken S., Kiel J.A.K.W., van den Berg M.A., Lascaris R., Bovenberg R.A.L., van der Klei I.J. Peroxisomes are required for efficient penicillin biosynthesis in Penicillium chrysogenum. Appl. Environ. Microbiol. 2010, 76:5702-5709.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 5702-5709
-
-
Meijer, W.H.1
Gidijala, L.2
Fekken, S.3
Kiel, J.A.K.W.4
van den Berg, M.A.5
Lascaris, R.6
Bovenberg, R.A.L.7
van der Klei, I.J.8
-
84
-
-
27144509740
-
Combinatorial polyketide biosynthesis by de novo design and rearrangement of modular polyketide synthase genes
-
Menzella H.G., Reid R., Carney J.R., Chandran S.S., Reisinger S.J., Patel K.G., Hopwood D.A., Santi D.V. Combinatorial polyketide biosynthesis by de novo design and rearrangement of modular polyketide synthase genes. Nat. Biotechnol. 2005, 23:1171-1176.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 1171-1176
-
-
Menzella, H.G.1
Reid, R.2
Carney, J.R.3
Chandran, S.S.4
Reisinger, S.J.5
Patel, K.G.6
Hopwood, D.A.7
Santi, D.V.8
-
85
-
-
68349131626
-
The rosettazyme: a synthetic cellulosome
-
Mitsuzawa S., Kagawa H., Li Y., Chan S.L., Paavola C.D., Trent J.D. The rosettazyme: a synthetic cellulosome. J. Biotechnol. 2009, 143:139-144.
-
(2009)
J. Biotechnol.
, vol.143
, pp. 139-144
-
-
Mitsuzawa, S.1
Kagawa, H.2
Li, Y.3
Chan, S.L.4
Paavola, C.D.5
Trent, J.D.6
-
86
-
-
73649152457
-
Allosteric proteins and cellular control systems
-
Monod J., Changeux J.P., Jacob F. Allosteric proteins and cellular control systems. J. Mol. Biol. 1963, 6:306-329.
-
(1963)
J. Mol. Biol.
, vol.6
, pp. 306-329
-
-
Monod, J.1
Changeux, J.P.2
Jacob, F.3
-
87
-
-
77950863739
-
Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli
-
Moon T.S., Dueber J.E., Shiue E., Prather K.L.J. Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli. Metab. Eng. 2010, 12:298-305.
-
(2010)
Metab. Eng.
, vol.12
, pp. 298-305
-
-
Moon, T.S.1
Dueber, J.E.2
Shiue, E.3
Prather, K.L.J.4
-
88
-
-
79952167181
-
Cellulase-xylanase synergy in designer cellulosomes for enhanced degradation of a complex cellulosic substrate
-
Moraïs S., Barak Y., Caspi J., Hadar Y., Lamed R., Shoham Y., Wilson D.B., Bayer E.A. Cellulase-xylanase synergy in designer cellulosomes for enhanced degradation of a complex cellulosic substrate. mBio 2010, 1.
-
(2010)
mBio
, pp. 1
-
-
Moraïs, S.1
Barak, Y.2
Caspi, J.3
Hadar, Y.4
Lamed, R.5
Shoham, Y.6
Wilson, D.B.7
Bayer, E.A.8
-
89
-
-
77953636504
-
Contribution of a xylan-binding module to the degradation of a complex cellulosic substrate by designer cellulosomes
-
Moraïs S., Barak Y., Caspi J., Hadar Y., Lamed R., Shoham Y., Wilson D.B., Bayer E.A. Contribution of a xylan-binding module to the degradation of a complex cellulosic substrate by designer cellulosomes. Appl. Environ. Microbiol. 2010, 76:3787-3796.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 3787-3796
-
-
Moraïs, S.1
Barak, Y.2
Caspi, J.3
Hadar, Y.4
Lamed, R.5
Shoham, Y.6
Wilson, D.B.7
Bayer, E.A.8
-
90
-
-
66149122278
-
Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p
-
Moxley J.F., Jewett M.C., Antoniewicz M.R., Villas-Boas S.G., Alper H., Wheeler R.T., Tong L., Hinnebusch A.G., Ideker T., Nielsen J., Stephanopoulos G. Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p. Proc. Natl Acad. Sci. USA 2009, 106:6477-6482.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 6477-6482
-
-
Moxley, J.F.1
Jewett, M.C.2
Antoniewicz, M.R.3
Villas-Boas, S.G.4
Alper, H.5
Wheeler, R.T.6
Tong, L.7
Hinnebusch, A.G.8
Ideker, T.9
Nielsen, J.10
Stephanopoulos, G.11
-
91
-
-
0036753365
-
Genetic control by a metabolite binding mRNA
-
Nahvi A., Sudarsan N., Ebert M.S., Zou X., Brown K.L., Breaker R.R. Genetic control by a metabolite binding mRNA. Chem. Biol. 2002, 9:1043.
-
(2002)
Chem. Biol.
, vol.9
, pp. 1043
-
-
Nahvi, A.1
Sudarsan, N.2
Ebert, M.S.3
Zou, X.4
Brown, K.L.5
Breaker, R.R.6
-
92
-
-
33745936562
-
Structure and function of photosystems I and II
-
Nelson N., Yocum C.F. Structure and function of photosystems I and II. Annu. Rev. Plant Biol. 2006, 57:521-565.
-
(2006)
Annu. Rev. Plant Biol.
, vol.57
, pp. 521-565
-
-
Nelson, N.1
Yocum, C.F.2
-
93
-
-
33747376106
-
Engineering of promoter replacement cassettes for fine-tuning of gene expression in Saccharomyces cerevisiae
-
Nevoigt E., Kohnke J., Fischer C.R., Alper H., Stahl U., Stephanopoulos G. Engineering of promoter replacement cassettes for fine-tuning of gene expression in Saccharomyces cerevisiae. Appl. Environ. Microbiol. 2006, 72:5266-5273.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5266-5273
-
-
Nevoigt, E.1
Kohnke, J.2
Fischer, C.R.3
Alper, H.4
Stahl, U.5
Stephanopoulos, G.6
-
94
-
-
0032481345
-
L is for lytic granules: lysosomes that kill
-
Page L.J., Darmon A.J., Uellner R., Griffiths G.M. L is for lytic granules: lysosomes that kill. Biochim. Biophys. Acta 1998, 1401:146-156.
-
(1998)
Biochim. Biophys. Acta
, vol.1401
, pp. 146-156
-
-
Page, L.J.1
Darmon, A.J.2
Uellner, R.3
Griffiths, G.M.4
-
95
-
-
47249117924
-
Biochemical and structural insights into bacterial organelle form and biogenesis
-
Parsons J.B., Dinesh S.D., Deery E., Leech H.K., Brindley A.A., Heldt D., Frank S., Smales C.M., Lünsdorf H., Rambach A., Gass M.H., Bleloch A., McClean K.J., Munro A.W., Rigby S.E.J., Warren M.J., Prentice M.B. Biochemical and structural insights into bacterial organelle form and biogenesis. J. Biol. Chem. 2008, 283:14366-14375.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 14366-14375
-
-
Parsons, J.B.1
Dinesh, S.D.2
Deery, E.3
Leech, H.K.4
Brindley, A.A.5
Heldt, D.6
Frank, S.7
Smales, C.M.8
Lünsdorf, H.9
Rambach, A.10
Gass, M.H.11
Bleloch, A.12
McClean, K.J.13
Munro, A.W.14
Rigby, S.E.J.15
Warren, M.J.16
Prentice, M.B.17
-
96
-
-
77950906711
-
Synthesis of empty bacterial microcompartments, directed organelle protein incorporation, and evidence of filament-associated organelle movement
-
Parsons J.B., Frank S., Bhella D., Liang M., Prentice M.B., Mulvihill D.P., Warren M.J. Synthesis of empty bacterial microcompartments, directed organelle protein incorporation, and evidence of filament-associated organelle movement. Mol. Cell 2010, 38:305-315.
-
(2010)
Mol. Cell
, vol.38
, pp. 305-315
-
-
Parsons, J.B.1
Frank, S.2
Bhella, D.3
Liang, M.4
Prentice, M.B.5
Mulvihill, D.P.6
Warren, M.J.7
-
97
-
-
33747078696
-
Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes
-
Pfleger B.F., Pitera D.J., Smolke C.D., Keasling J.D. Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes. Nat. Biotechnol. 2006, 24:1027-1032.
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 1027-1032
-
-
Pfleger, B.F.1
Pitera, D.J.2
Smolke, C.D.3
Keasling, J.D.4
-
98
-
-
8744224466
-
OptStrain: a computational framework for redesign of microbial production systems
-
Pharkya P., Burgard A.P., Maranas C.D. OptStrain: a computational framework for redesign of microbial production systems. Genome Res. 2004, 14:2367-2376.
-
(2004)
Genome Res.
, vol.14
, pp. 2367-2376
-
-
Pharkya, P.1
Burgard, A.P.2
Maranas, C.D.3
-
99
-
-
84859763855
-
-
MIT Artificial Intelligence Laboratory: MIT Synthetic Biology Working Group, Massachusetts Institute of Technology, Cambridge, MA
-
Phillips I., Silver P. A new biobrick assembly strategy designed for facile protein engineering. DSpace 2006, MIT Artificial Intelligence Laboratory: MIT Synthetic Biology Working Group, Massachusetts Institute of Technology, Cambridge, MA. http://hdl.handle.net/1721.1/32535.
-
(2006)
A new biobrick assembly strategy designed for facile protein engineering. DSpace
-
-
Phillips, I.1
Silver, P.2
-
101
-
-
0014674782
-
A mechanism for repressor action
-
Reznikoff W.S., Miller J.H., Scaife J.G., Beckwith J.R. A mechanism for repressor action. J. Mol. Biol. 1969, 43:201-213.
-
(1969)
J. Mol. Biol.
, vol.43
, pp. 201-213
-
-
Reznikoff, W.S.1
Miller, J.H.2
Scaife, J.G.3
Beckwith, J.R.4
-
102
-
-
33645870422
-
Production of the antimalarial drug precursor artemisinic acid in engineered yeast
-
Ro, D.-K., Paradise, E.M., Ouellet, M., Fisher, K.J., Newman, K.L., Ndungu, J.M., Ho, K.A., Eachus, R.A., Ham, T.S., Kirby, J., Chang, M.C.Y., Withers, S.T., Shiba, Y., Sarpong, R., Keasling, J.D., Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature, 440, 2006, 940.
-
(2006)
Nature
, vol.440
, pp. 940
-
-
Ro, D.-K.1
Paradise, E.M.2
Ouellet, M.3
Fisher, K.J.4
Newman, K.L.5
Ndungu, J.M.6
Ho, K.A.7
Eachus, R.A.8
Ham, T.S.9
Kirby, J.10
Chang, M.C.Y.11
Withers, S.T.12
Shiba, Y.13
Sarpong, R.14
Keasling, J.D.15
-
103
-
-
70349964350
-
Automated design of synthetic ribosome binding sites to control protein expression
-
Salis H.M., Mirsky E.A., Voigt C.A. Automated design of synthetic ribosome binding sites to control protein expression. Nat. Biotechnol. 2009, 27:946-950.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 946-950
-
-
Salis, H.M.1
Mirsky, E.A.2
Voigt, C.A.3
-
104
-
-
77749264485
-
Spatially ordered dynamics of the bacterial carbon fixation machinery
-
Savage D., Afonso B., Chen A., Silver P. Spatially ordered dynamics of the bacterial carbon fixation machinery. Science 2010, 327:1258.
-
(2010)
Science
, vol.327
, pp. 1258
-
-
Savage, D.1
Afonso, B.2
Chen, A.3
Silver, P.4
-
105
-
-
38749110064
-
Defossiling fuel: how synthetic biology can transform biofuel production
-
Savage D.F., Way J., Silver P.A. Defossiling fuel: how synthetic biology can transform biofuel production. ACS Chem. Biol. 2008, 3:13-16.
-
(2008)
ACS Chem. Biol.
, vol.3
, pp. 13-16
-
-
Savage, D.F.1
Way, J.2
Silver, P.A.3
-
106
-
-
79551676901
-
Elimination of thermodynamically infeasible loops in steady-state metabolic models
-
Schellenberger J., Lewis N.E., Palsson B.Ø. Elimination of thermodynamically infeasible loops in steady-state metabolic models. Biophys. J. 2011, 100:544-553.
-
(2011)
Biophys. J.
, vol.100
, pp. 544-553
-
-
Schellenberger, J.1
Lewis, N.E.2
Palsson, B.Ø.3
-
107
-
-
0033156024
-
Use and limitations of modular metabolic control analysis in medicine and biotechnology
-
Schuster S. Use and limitations of modular metabolic control analysis in medicine and biotechnology. Metab. Eng. 1999, 1:232-242.
-
(1999)
Metab. Eng.
, vol.1
, pp. 232-242
-
-
Schuster, S.1
-
108
-
-
0037069467
-
Analysis of optimality in natural and perturbed metabolic networks
-
Segrè D., Vitkup D., Church G.M. Analysis of optimality in natural and perturbed metabolic networks. Proc. Natl. Acad. Sci. USA 2002, 99:15112-15117.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 15112-15117
-
-
Segrè, D.1
Vitkup, D.2
Church, G.M.3
-
109
-
-
77955576372
-
Knitting complex weaves with DNA origami
-
Shih W.M., Lin C. Knitting complex weaves with DNA origami. Curr. Opin. Struct. Biol. 2010, 20:276-282.
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 276-282
-
-
Shih, W.M.1
Lin, C.2
-
110
-
-
33846936445
-
Synthetic cooperation in engineered yeast populations
-
Shou W., Ram S., Vilar J.M.G. Synthetic cooperation in engineered yeast populations. Proc. Natl. Acad. Sci. USA 2007, 104:1877-1882.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 1877-1882
-
-
Shou, W.1
Ram, S.2
Vilar, J.M.G.3
-
111
-
-
0034467867
-
Coordinated, differential expression of two genes through directed mRNA cleavage and stabilization by secondary structures
-
Smolke C.D., Carrier T.A., Keasling J.D. Coordinated, differential expression of two genes through directed mRNA cleavage and stabilization by secondary structures. Appl. Environ. Microbiol. 2000, 66:5399-5405.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 5399-5405
-
-
Smolke, C.D.1
Carrier, T.A.2
Keasling, J.D.3
-
113
-
-
75749125061
-
Microbial production of fatty-acid-derived fuels and chemicals from plant biomass
-
Steen E.J., Kang Y., Bokinsky G., Hu Z., Schirmer A., McClure A., Del Cardayre S.B., Keasling J.D. Microbial production of fatty-acid-derived fuels and chemicals from plant biomass. Nature 2010, 463:559-562.
-
(2010)
Nature
, vol.463
, pp. 559-562
-
-
Steen, E.J.1
Kang, Y.2
Bokinsky, G.3
Hu, Z.4
Schirmer, A.5
McClure, A.6
Del Cardayre, S.B.7
Keasling, J.D.8
-
114
-
-
0032600888
-
Metabolic fluxes and metabolic engineering
-
Stephanopoulos G. Metabolic fluxes and metabolic engineering. Metab. Eng. 1999, 1:1-11.
-
(1999)
Metab. Eng.
, vol.1
, pp. 1-11
-
-
Stephanopoulos, G.1
-
116
-
-
38649086717
-
Natural variability in S-adenosylmethionine (SAM)-dependent riboswitches: S-box elements in bacillus subtilis exhibit differential sensitivity to SAM In vivo and in vitro
-
Tomsic J., McDaniel B.A., Grundy F.J., Henkin T.M. Natural variability in S-adenosylmethionine (SAM)-dependent riboswitches: S-box elements in bacillus subtilis exhibit differential sensitivity to SAM In vivo and in vitro. J. Bacteriol. 2008, 190:823-833.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 823-833
-
-
Tomsic, J.1
McDaniel, B.A.2
Grundy, F.J.3
Henkin, T.M.4
-
118
-
-
70349436024
-
Functional assembly of minicellulosomes on the Saccharomyces cerevisiae cell surface for cellulose hydrolysis and ethanol production
-
Tsai S.L., Oh J., Singh S., Chen R., Chen W. Functional assembly of minicellulosomes on the Saccharomyces cerevisiae cell surface for cellulose hydrolysis and ethanol production. Appl. Environ. Microbiol. 2009, 75:6087-6093.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 6087-6093
-
-
Tsai, S.L.1
Oh, J.2
Singh, S.3
Chen, R.4
Chen, W.5
-
119
-
-
33847073370
-
Expanding the metabolic engineering toolbox: more options to engineer cells
-
Tyo K.E., Alper H.S., Stephanopoulos G.N. Expanding the metabolic engineering toolbox: more options to engineer cells. Trends Biotechnol. 2007, 25:132-137.
-
(2007)
Trends Biotechnol.
, vol.25
, pp. 132-137
-
-
Tyo, K.E.1
Alper, H.S.2
Stephanopoulos, G.N.3
-
120
-
-
0028146781
-
Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110
-
Varma A., Palsson B.O. Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. Appl. Environ. Microbiol. 1994, 60:3724-3731.
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 3724-3731
-
-
Varma, A.1
Palsson, B.O.2
-
121
-
-
68949161807
-
Programming cells by multiplex genome engineering and accelerated evolution
-
Wang, H., Isaacs, F., Carr, P., Sun, Z., Xu, G., Forest, C., Church, G., Programming cells by multiplex genome engineering and accelerated evolution. Nature, 2009.
-
(2009)
Nature
-
-
Wang, H.1
Isaacs, F.2
Carr, P.3
Sun, Z.4
Xu, G.5
Forest, C.6
Church, G.7
-
122
-
-
54249113318
-
Higher-order cellular information processing with synthetic RNA devices
-
Win M.N., Smolke C.D. Higher-order cellular information processing with synthetic RNA devices. Science 2008, 322:456-460.
-
(2008)
Science
, vol.322
, pp. 456-460
-
-
Win, M.N.1
Smolke, C.D.2
-
123
-
-
78649851616
-
Dynamics in the mixed microbial concourse
-
Wintermute E.H., Silver P.A. Dynamics in the mixed microbial concourse. Genes Dev. 2010, 24:2603-2614.
-
(2010)
Genes Dev.
, vol.24
, pp. 2603-2614
-
-
Wintermute, E.H.1
Silver, P.A.2
-
124
-
-
77956415336
-
Emergent cooperation in microbial metabolism
-
Wintermute E.H., Silver P.A. Emergent cooperation in microbial metabolism. Mol. Syst. Biol. 2010, 6:407.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 407
-
-
Wintermute, E.H.1
Silver, P.A.2
-
125
-
-
79954582170
-
Expanding Coverage of the metabolome for global metabolite profiling
-
Yanes, O., Tautenhahn, R., Patti, G.J., Siuzdak, G., Expanding Coverage of the metabolome for global metabolite profiling. Anal. Chem., 2011.
-
(2011)
Anal. Chem.
-
-
Yanes, O.1
Tautenhahn, R.2
Patti, G.J.3
Siuzdak, G.4
-
126
-
-
79953080696
-
The protein shells of bacterial microcompartment organelles
-
Yeates, T.O., Thompson, M.C., Bobik, T.A., The protein shells of bacterial microcompartment organelles. Curr. Opin. Struct. Biol., 2011.
-
(2011)
Curr. Opin. Struct. Biol.
-
-
Yeates, T.O.1
Thompson, M.C.2
Bobik, T.A.3
-
127
-
-
77954197778
-
Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model
-
Yizhak K., Benyamini T., Liebermeister W., Ruppin E., Shlomi T. Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model. Bioinformatics 2010, 26:i255-i260.
-
(2010)
Bioinformatics
, vol.26
-
-
Yizhak, K.1
Benyamini, T.2
Liebermeister, W.3
Ruppin, E.4
Shlomi, T.5
-
128
-
-
2942675265
-
Interactions and self-organization in the soil-microbe complex
-
Young I.M., Crawford J.W. Interactions and self-organization in the soil-microbe complex. Science (New York, NY) 2004, 304:1634-1637.
-
(2004)
Science (New York, NY)
, vol.304
, pp. 1634-1637
-
-
Young, I.M.1
Crawford, J.W.2
-
129
-
-
2442526837
-
Just-in-time transcription program in metabolic pathways
-
Zaslaver A., Mayo A.E., Rosenberg R., Bashkin P., Sberro H., Tsalyuk M., Surette M.G., Alon U. Just-in-time transcription program in metabolic pathways. Nat. Genet. 2004, 36:486-491.
-
(2004)
Nat. Genet.
, vol.36
, pp. 486-491
-
-
Zaslaver, A.1
Mayo, A.E.2
Rosenberg, R.3
Bashkin, P.4
Sberro, H.5
Tsalyuk, M.6
Surette, M.G.7
Alon, U.8
-
130
-
-
0035909958
-
The remarkable structural and functional organization of the eukaryotic pyruvate dehydrogenase complexes
-
Zhou Z.H., McCarthy D.B., O'Connor C.M., Reed L.J., Stoops J.K. The remarkable structural and functional organization of the eukaryotic pyruvate dehydrogenase complexes. Proc. Natl. Acad. Sci. USA 2001, 98:14802-14807.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 14802-14807
-
-
Zhou, Z.H.1
McCarthy, D.B.2
O'Connor, C.M.3
Reed, L.J.4
Stoops, J.K.5
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