Optimization of variable fluorescence measurements of phytoplankton communities with cyanobacteria

Photosynthesis Research

Volumn 112, Issue 1, 2012, Pages 13-30

  Simis, Stefan G H ^a   Huot, Yannick ^b   Babin, Marcel ^c,d   Seppälä, Jukka ^a   Metsamaa, Liisa ^e  

^a FINNISH ENVIRONMENT INSTITUTE   (Finland)

^b UNIVERSITÉ DE SHERBROOKE   (Canada)

^c LABORATOIRE D OCÉANOGRAPHIE DE VILLEFRANCHE   (France)

^d UNIVERSITÉ LAVAL   (Canada)

^e UNIVERSITY OF TARTU   (Estonia)

Author keywords

Algae; Cyanobacteria; Excitation emission matrix; Fluorometry; Photosynthesis; Phytoplankton; Variable fluorescence

Indexed keywords

CHLOROPHYLL; CHLOROPHYLL A; PHYCOBILIPROTEIN;

ARTICLE; BIOTA; COMPUTER SIMULATION; CULTURE MEDIUM; CULTURE TECHNIQUE; CYANOBACTERIUM; FLUORESCENCE; FLUOROMETRY; LIGHT; METABOLISM; METHODOLOGY; PHOTOSYSTEM II; PHYCOBILISOME; PHYSIOLOGY; PHYTOPLANKTON; REGRESSION ANALYSIS; SENSITIVITY AND SPECIFICITY; SPECTROSCOPY; STANDARD;

BIOTA; CHLOROPHYLL; COMPUTER SIMULATION; CULTURE MEDIA; CULTURE TECHNIQUES; CYANOBACTERIA; FLUORESCENCE; FLUOROMETRY; LIGHT; PHOTOSYSTEM II PROTEIN COMPLEX; PHYCOBILIPROTEINS; PHYCOBILISOMES; PHYTOPLANKTON; REGRESSION ANALYSIS; SENSITIVITY AND SPECIFICITY; SPECTRUM ANALYSIS;

ALGAE; CYANOBACTERIA;

EID: 84859756542     PISSN: 01668595     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11120-012-9729-6     Document Type: Article

References (48)

1. D Anderson P Glibert J Burkholder 2002 Harmful algal blooms and eutrophication: nutrient sources, composition, and consequences Estuaries Coasts 25 4 704 726 10.1007/bf02804901 10.1007/BF02804901 (Pubitemid 35211658)
2. M Babin J Therriault L Legendre B Nieke R Reuter A Condal 1995 Relationship between the maximum quantum yield of carbon fixation and the minimum quantum yield of chlorophyll a in vivo fluorescence in the Gulf of St. Lawrence Limnol Oceanogr 40 5 956 968 10.4319/lo.1995.40.5.0956 1:CAS:528:DyaK2MXosFent70%3D (Pubitemid 26463407)
3. M Beutler KH Wiltshire B Meyer C Moldaenke C Luring M Meyerhofer UP Hansen H Dau 2002 A fluorometric method for the differentiation of algal populations in vivo and in situ Photosynth Res 72 1 39 53 10.1023/A: 1016026607048 16228533 10.1023/A:1016026607048 1:CAS:528:DC%2BD38XkvFejsb4%3D (Pubitemid 34812540)
4. M Beutler KH Wiltshire M Arp J Kruse C Reineke C Moldaenke UP Hansen 2003 A reduced model of the fluorescence from the cyanobacterial photosynthetic apparatus designed for the in situ detection of cyanobacteria Biochim Biophys Acta-Bioenerg 1604 33 46 10.1016/S0005-2728(03)00022-7 10.1016/S0005-2728(03) 00022-7 1:CAS:528:DC%2BD3sXis12rtbk%3D (Pubitemid 36398474)
5. M Beutler KH Wiltshire C Reineke UP Hansen 2004 Algorithms and practical fluorescence models of the photosynthetic apparatus of red cyanobacteria and cryptophyta designed for the fluorescence detection of red cyanobacteria and cryptophytes Aquat Microb Ecol 35 2 115 129 10.3354/ame035115 10.3354/ame035115 (Pubitemid 39098808)
6. RR Bidigare ME Ondrusek JH Morrow DA Kiefer 1990 In vivo absorption properties of algal pigments SPIE Proc Ocean Opt X 1302 290 302
7. J Biggins D Bruce 1989 Regulation of excitation-energy transfer in organisms containing phycobilins Photosynth Res 20 1 1 34 10.1007/BF00028620 10.1007/BF00028620 1:CAS:528:DyaL1MXkt1SrsL0%3D
8. D Campbell D Bruce C Carpenter P Gustafsson G Öquist 1996 Two forms of the photosystem II D1 protein alter energy dissipation and state transitions in the cyanobacterium Synechococcus sp. PCC 7942 Photosynth Res 47 2 131 144 10.1007/BF00016176 10.1007/BF00016176 1:CAS:528:DyaK28Xislyhtbg%3D (Pubitemid 126786708)
9. D Campbell V Hurry AK Clarke P Gustafsson G Öquist 1998 Chlorophyll fluorescence analysis of cyanobacterial photosynthesis and acclimation Microbiol Mol Biol Rev 62 3 667 683 9729605 1:CAS:528:DyaK1cXmtFOjurY%3D (Pubitemid 28415549)
10. A Ernst S Becker UIA Wollenzien C Postius 2003 Ecosystem-dependent adaptive radiations of picocyanobacteria inferred from 16S rRNA and ITS-1 sequence analysis Microbiol 149 1 217 228 10.1099/mic.0.25475-0 10.1099/mic.0.25475-0 1:CAS:528:DC%2BD3sXnvV2lsA%3D%3D (Pubitemid 36175692)
11. D Ficek S Kaczmarek J Ston-Egiert B Wozniak R Majchrowski J Dera 2004 Spectra of light absorption by phytoplankton pigments in the Baltic; conclusions to be drawn from a Gaussian analysis of empirical data Oceanologia 46 4 533 555 (Pubitemid 40133793)
12. NA Gaevsky VI Kolmakov OV Anishchenko TB Gorbaneva 2005 Using DCMU-fluorescence method for the identification of dominant phytoplankton groups J Appl Phycol 17 6 483 494 10.1007/s10811-005-2903-x 10.1007/s10811-005-2903-x 1:CAS:528:DC%2BD28XhtVait7w%3D (Pubitemid 43207298)
13. B Genty JM Briantais NR Baker 1989 The relationship between the quantum yield of photosynthetic electron-transport and quenching of chlorophyll fluorescence Biochim Biophys Acta 990 1 87 92 10.1016/S0304-4165(89)80016-9 10.1016/S0304-4165(89)80016-9 1:CAS:528:DyaL1MXhsFWntL4%3D
14. Gilmore AM, Govindjee (1999) How higher plants respond to excess light: energy dissipation in photosystem II. In: Singhal GS, Renger R, Sopory SK, Irrgang K-D, Govindjee (eds) Concepts in photobiology: photosynthesis and photomorphogenesis. Narosa-Publishing, New-Delhi, pp 513-548
15. DE Gustafson DK Stoecker MD Johnson WF Van Heukelem K Sneider 2000 Cryptophyte algae are robbed of their organelles by the marine ciliate Mesodinium rubrum Nature 405 6790 1049 1052 10.1038/35016570 10890444 10.1038/35016570 1:CAS:528:DC%2BD3cXkvFKksr0%3D (Pubitemid 30447787)
16. GM Hallegraeff 1993 A review of harmful algal blooms and their apparent global increase Phycologia 32 2 79 99 10.2216/i0031-8884-32-2-79.1 (Pubitemid 24410302)
17. Hällfors G, Hällfors S (1992) The Tvärminne collection of algal cultures. Tvärminne studies, vol 5. Tvärminne Zoological Station, University of Helsinki, Helsinki, pp 15-17
18. Huot Y, Babin M (2010) Overview of fluorescence protocols: theory, basic concepts, and practice. In: Suggett DJ, Prášil O, Borowitzka MA (eds) Chlorophyll a fluorescence in aquatic sciences: methods and applications, developments in applied phycology, vol 4. Springer, Berlin, pp 31-74. doi: 10.1007/978-90-481-9268-7-3
19. Johnsen G, Sakshaug E (1996) Light harvesting in bloom-forming marine phytoplankton: species-specificity and photoacclimation. Sci Mar 60:47-56 (Pubitemid 126643748)
20. G Johnsen E Sakshaug 2007 Biooptical characteristics of PSII and PSI in 33 species (13 pigment groups) of marine phytoplankton, and the relevance for pulse-amplitude-modulated and fast-repetition-rate fluorometry J Phycol 43 6 1236 1251 10.1111/j.1529-8817.2007.00422.x 10.1111/j.1529-8817.2007.00422.x 1:CAS:528:DC%2BD1cXltlSrurg%3D (Pubitemid 350221967)
21. R Kana O Prasil O Komarek GC Papageorgiou Govindjee 2009 Spectral characteristic of fluorescence induction in a model cyanobacterium, Synechococcus sp (PCC 7942) Biochim Biophys Acta-Bioenerg 1787 10 1170 1178 10.1016/j.bbabio.2009.04.013 10.1016/j.bbabio.2009.04.013 1:CAS:528: DC%2BD1MXotl2ksLk%3D
22. H Kautsky A Hirsch 1931 Neue versuche zur kohlenstoffassimilation Naturwissenschaften 19 964 10.1007/BF01516164 1:CAS:528:DyaA38XhsFaguw%3D%3D
23. D Kiefer 1973 Fluorescence properties of natural phytoplankton populations Mar Biol 22 3 263 269 10.1007/BF00389180 10.1007/BF00389180
24. Z Kolber PG Falkowski 1993 Use of active fluorescence to estimate phytoplankton photosynthesis in situ Limnol Oceanogr 38 8 1646 1665 10.4319/lo.1993.38.8.1646 1:CAS:528:DyaK2cXlvVKgurk%3D (Pubitemid 2043633)
25. Kolbowski J, Schreiber U (1995) Computer-controlled phytoplankton analyzer based on 4-wavelengths PAM chlorophyll fluorometer. In: Mathis P (ed) Photosynthesis: from light to biosphere, vol V. Kluwer Academic Publishers, Dordrecht, pp 825-828
26. U Kopf J Heinze 1984 2,7-Bis(diethylamino)phenazoxonium chloride as a quantum counter for emission measurements between 240 and 700 nm Anal Chem 56 11 1931 1935 10.1021/ac00275a039 10.1021/ac00275a039 1:CAS:528:DyaL2cXkvVWjsbc%3D (Pubitemid 14624215)
27. H Küpper E Andresen S Wiegert M Šimek B Leitenmaier I Šetlik 2009 Reversible coupling of individual phycobiliprotein isoforms during state transitions in the cyanobacterium Trichodesmium analysed by single-cell fluorescence kinetic measurements Biochim Biophys Acta-Bioenerg 1787 3 155 167 10.1016/j.bbabio.2009.01.001 10.1016/j.bbabio.2009.01.001
28. F Lantoine J Neveux 1997 Spatial and seasonal variations in abundance and spectral characteristics of phycoerythrins in the tropical northeastern Atlantic Ocean Deep-Sea Res 44 2 223 246 10.1016/S0967-0637(96)00094-5 10.1016/S0967-0637(96)00094-5 1:CAS:528:DyaK2sXislWqtbg%3D (Pubitemid 27156023)
29. Ley AC (1980) The distribution of absorbed light energy for algal photosynthesis. In: Falkowski PG (ed) Primary productivity in the sea. Environmental science research series, vol 19. Plenum Press, New York, pp 59-82
30. C Lorenzen 1966 A method for the continuous measurement of in vivo chlorophyll concentration Deep Sea Res 13 2 223 227
31. DF Millie OME Schofield GJ Kirkpatrick G Johnsen TJ Evens 2002 Using absorbance and fluorescence spectra to discriminate microalgae Eur J Phycol 37 3 313 322 10.1017/S0967026202003700 10.1017/S0967026202003700
32. J Neveux MMB Tenorio C Dupouy TA Villareal 2006 Spectral diversity of phycoerythrins and diazotroph abundance in tropical waters Limnol Oceanogr 51 4 1689 1698 10.4319/lo.2006.51.4.1689 1:CAS:528:DC%2BD28Xot1antb4%3D (Pubitemid 44185721)
33. G Parésys C Rigart B Rousseau AWM Wong F Fan JP Barbier J Lavaud 2005 Quantitative and qualitative evaluation of phytoplankton communities by trichromatic chlorophyll fluorescence excitation with special focus on cyanobacteria Water Res 39 5 911 921 10.1016/j.watres.2004.12.005 15743638 10.1016/j.watres.2004.12.005 (Pubitemid 40311667)
34. M Raateoja J Seppälä P Ylöstalo 2004 Fast repetition rate fluorometry is not applicable to studies of filamentous cyanobacteria from the Baltic Sea Limnol Oceanogr 49 4 1006 1012 10.4319/lo.2004.49.4.1006 (Pubitemid 39040338)
35. G Samson O Prasil B Yaakoubd 1999 Photochemical and thermal phases of chlorophyll a fluorescence Photosynthetica 37 2 163 182 10.1023/A:1007095619317 10.1023/A:1007095619317 1:CAS:528:DC%2BD3cXhs1antro%3D (Pubitemid 30165939)
36. S Sathyendranath L Lazzara L Prieur 1987 Variations in the spectral values of specific absorption of phytoplankton Limnol Oceanogr 32 2 403 415 10.4319/lo.1987.32.2.0403 1:CAS:528:DyaL2sXktlKrs7o%3D
37. H Schubert U Schiewer E Tschirner 1989 Fluorescence characteristics of cyanobacteria (blue-green algae) J Plankton Res 11 2 353 359 10.1093/plankt/11.2.353 10.1093/plankt/11.2.353
38. J Seppälä K Olli 2008 Multivariate analysis of phytoplankton spectral in vivo fluorescence: estimation of phytoplankton biomass during a mesocosm study in the Baltic Sea Mar Ecol-Prog Ser 370 69 85 10.3354/meps07647 10.3354/meps07647
39. J Seppälä P Ylöstalo S Kaitala S Hällfors M Raateoja P Maunula 2007 Ship-of-opportunity based phycocyanin fluorescence monitoring of the filamentous cyanobacteria bloom dynamics in the Baltic Sea Estuar Coast Shelf Sci 73 3-4 489 500 10.1016/j.ecss.2007.02.015 10.1016/j.ecss.2007.02.015 (Pubitemid 46802956)
40. Sidler WA (1994) Phycobilisome and phycobiliprotein structure. In: Bryant DA (ed) The molecular biology of cyanobacteria. Advances in photosynthesis and respiration. Kluwer Academic Publishers, Dordrecht, pp 139-216. doi: 10.1007/0-306-48205-3-7
41. K Sivonen K Kononen W Carmichael A Dahlem K Rinehart J Kiviranta S Niemela 1989 Occurrence of the hepatotoxic cyanobacterium Nodularia spumigena in the Baltic Sea and structure of the toxin Appl and Environ Microb 55 8 1990 1995 1:CAS:528:DyaL1MXltFais7o%3D
42. M Stomp J Huisman L Voros FR Pick M Laamanen T Haverkamp LJ Stal 2007 Colourful coexistence of red and green picocyanobacteria in lakes and seas Ecol Lett 10 4 290 298 10.1111/j.1461-0248.2007.01026.x 17355568 10.1111/j.1461-0248. 2007.01026.x (Pubitemid 46426877)
43. A Subramaniam EJ Carpenter D Karentz PG Falkowski 1999 Bio-optical properties of the marine diazotrophic cyanobacteria Trichodesmium spp. I. Absorption and photosynthetic action spectra Limnol Oceanogr 44 3 608 617 10.4319/lo.1999.44.3.0608 1:CAS:528:DyaK1MXjs1yjs74%3D (Pubitemid 29233653)
44. DJ Suggett HL MacIntyre RJ Geider 2004 Evaluation of biophysical and optical determinations of light absorption by photosystem II in phytoplankton Limnol Oceanogr Meth 2 316 332 10.4319/lom.2004.2.316 (Pubitemid 43723696)
45. DJ Suggett CM Moore AE Hickman RJ Geider 2009 Interpretation of fast repetition rate (FRR) fluorescence: signatures of phytoplankton community structure versus physiological state Mar Ecol-Prog Ser 376 1 19 10.3354/meps07830 10.3354/meps07830
46. W Vincent 1983 Fluorescence properties of the freshwater phytoplankton: three algal classes compared Eur J Phycol 18 1 5 21 10.1080/00071618300650021 10.1080/00071618300650021
47. W Vredenberg M Durchan O Prasil 2009 Photochemical and photoelectrochemical quenching of chlorophyll fluorescence in photosystem II Biochim Biophys Acta-Bioenerg 1787 12 1468 1478 10.1016/j.bbabio.2009.06.008 10.1016/j.bbabio.2009.06.008 1:CAS:528:DC%2BD1MXhtV2ltrjJ
48. C Yentsch C Yentsch 1979 Fluorescence spectral signatures: the characterization of phytoplankton populations by the use of excitation and emission spectra J Mar Res 37 3 471 483 1:CAS:528:DyaL3cXivVamtQ%3D%3D (Pubitemid 10414181)