메뉴 건너뛰기




Volumn 28, Issue 8, 2012, Pages 1058-1061

Defining and providing robust controls for microRNA prediction

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MICRORNA; RIBONUCLEASE III;

EID: 84859743784     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts114     Document Type: Article
Times cited : (22)

References (20)
  • 1
    • 34748906143 scopus 로고    scopus 로고
    • Antisense-mediated exon skipping: a versatile tool with therapeutic and research applications
    • Aartsma-Rus, A. and van Ommen, G.-J.B. (2007) Antisense-mediated exon skipping: a versatile tool with therapeutic and research applications, RNA, 13, 1609-1624.
    • (2007) RNA , vol.13 , pp. 1609-1624
    • Aartsma-Rus, A.1    van Ommen, G.-J.2
  • 2
    • 28044471565 scopus 로고    scopus 로고
    • MicroRNA functions in animal development and human disease
    • Alvarez-Garcia, I. and Miska, E.A. (2005) MicroRNA functions in animal development and human disease. Development, 132, 4653-4662.
    • (2005) Development , vol.132 , pp. 4653-4662
    • Alvarez-Garcia, I.1    Miska, E.A.2
  • 3
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic, S. and Claverie, J.M. (1997) The significance of digital gene expression profiles. Genome Res., 7, 986-995.
    • (1997) Genome Res. , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.M.2
  • 4
    • 33747884345 scopus 로고    scopus 로고
    • Gene expression omnibus: microarray data storage, submission, retrieval, and analysis
    • Barrett, T. and Edgar, R. (2006) Gene expression omnibus: microarray data storage, submission, retrieval, and analysis. Meth. Enzymol, 411, 352-369.
    • (2006) Meth. Enzymol , vol.411 , pp. 352-369
    • Barrett, T.1    Edgar, R.2
  • 5
    • 79551586302 scopus 로고    scopus 로고
    • Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    • Berezikov, E., et al. (2011) Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence. Genome Res., 21, 203-215.
    • (2011) Genome Res. , vol.21 , pp. 203-215
    • Berezikov, E.1
  • 6
    • 84859762428 scopus 로고    scopus 로고
    • Classification based on the support vector machine, regression depth, and discriminlant analysis
    • Berlin, Germany
    • Christmann, A. et al. (2002) Classification based on the support vector machine, regression depth, and discriminlant analysis. In Proceedings in Computational Statistics (Compstat 2002), Berlin, Germany, pp. 225-230.
    • (2002) Proceedings in Computational Statistics (Compstat 2002) , pp. 225-230
    • Christmann, A.1
  • 7
    • 41849084855 scopus 로고    scopus 로고
    • Discovering microRNAs from deep sequencing data using miRDeep
    • Friedlander, M.R. et al. (2008) Discovering microRNAs from deep sequencing data using miRDeep. Nat. Biotechnol., 26, 407-415.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 407-415
    • Friedlander, M.R.1
  • 8
    • 43349093418 scopus 로고    scopus 로고
    • RNAsecondary structure analysis using the Vienna RNApackage
    • Chapter 12 Unit12
    • Hofacker, I.L. (2009) RNAsecondary structure analysis using the Vienna RNApackage. Curr. Protoc. Bioinformatics, Chapter 12, Unit12 12.
    • (2009) Curr. Protoc. Bioinformatics , pp. 12
    • Hofacker, I.L.1
  • 9
    • 78651293534 scopus 로고    scopus 로고
    • miRBase: integrating microRNAannotation and deep-sequencing data
    • Kozomara, A. and Griffiths-Jones, S. (2010) miRBase: integrating microRNAannotation and deep-sequencing data. Nucleic Acids Res., 39, D152-D157.
    • (2010) Nucleic Acids Res. , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 10
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., et al. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1
  • 11
    • 78149332037 scopus 로고    scopus 로고
    • Complexity of the microRNA repertoire revealed by nextgeneration sequencing
    • Lee, L.W. et al. (2010) Complexity of the microRNA repertoire revealed by nextgeneration sequencing. RNA, 16, 2170-2180.
    • (2010) RNA , vol.16 , pp. 2170-2180
    • Lee, L.W.1
  • 12
    • 56349133372 scopus 로고    scopus 로고
    • Pre-miRNA loop nucleotides control the distinct activities of mir-181a-1 and mir-181c in early T cell development
    • Liu, G. et al. (2008) Pre-miRNA loop nucleotides control the distinct activities of mir-181a-1 and mir-181c in early T cell development. PLoS One, 3, e3592.
    • (2008) PLoS One , vol.3
    • Liu, G.1
  • 13
    • 41649106136 scopus 로고    scopus 로고
    • Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    • Morin, R.D. et al. (2008) Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res., 18, 610-621.
    • (2008) Genome Res. , vol.18 , pp. 610-621
    • Morin, R.D.1
  • 14
    • 34447309058 scopus 로고    scopus 로고
    • De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures
    • Ng, K.L. and Mishra, S.K. (2007) De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures. Bioinformatics, 23, 1321-1330.
    • (2007) Bioinformatics , vol.23 , pp. 1321-1330
    • Ng, K.L.1    Mishra, S.K.2
  • 15
    • 33846437079 scopus 로고    scopus 로고
    • Unique folding of precursor microRNAs: quantitative evidence and implications for de novo identification
    • Ng Kwang Loong, S. and Mishra, S.K. (2007) Unique folding of precursor microRNAs: quantitative evidence and implications for de novo identification, RNA, 13, 170-187.
    • (2007) RNA , vol.13 , pp. 170-187
    • Ng Kwang Loong, S.1    Mishra, S.K.2
  • 16
    • 33947728394 scopus 로고    scopus 로고
    • RNAstem-loops: to be or not to be cleaved by RNAse III
    • Ritchie, W. et al. (2007) RNAstem-loops: to be or not to be cleaved by RNAse III. RNA, 13, 457-462.
    • (2007) RNA , vol.13 , pp. 457-462
    • Ritchie, W.1
  • 17
    • 84859757118 scopus 로고    scopus 로고
    • Mol. Biol., 17, 1030-1034.
    • Mol. Biol. , vol.17 , pp. 1030-1034
  • 18
    • 77955419755 scopus 로고    scopus 로고
    • Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans
    • Taft, R.J. et al. (2010) Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans. Nat. Struct. Mol. Biol., 17, 1030-1034.
    • (2010) Nat. Struct. Mol. Biol. , vol.17 , pp. 1030-1034
    • Taft, R.J.1
  • 19
    • 30344447264 scopus 로고    scopus 로고
    • Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine
    • Xue, C. et al. (2005) Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine. BMC Bioinformatics, 6, 310.
    • (2005) BMC Bioinformatics , vol.6 , pp. 310
    • Xue, C.1
  • 20
    • 33749048055 scopus 로고    scopus 로고
    • The microRNA: overview of the RNA gene that modulates gene functions
    • Ying, S.Y. et al. (2006) The microRNA: overview of the RNA gene that modulates gene functions. Methods Mol. Biol., 342, 1-18.
    • (2006) Methods Mol. Biol. , vol.342 , pp. 1-18
    • Ying, S.Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.