Four allantoinase genes are expressed in nitrogen-fixing soybean

Plant Physiology and Biochemistry

Volumn 54, Issue , 2012, Pages 149-155

  Duran, Veronica A ^a   Todd, Christopher D ^a  

^a UNIVERSITY OF SASKATCHEWAN   (Canada)

Author keywords

Allantoin; Allantoinase; Biological nitrogen fixation; Nitrogen metabolism; Nodules; Soybean; Ureides

Indexed keywords

ALLANTOINASE; AMIDASE; NITROGEN; VEGETABLE PROTEIN;

ARTICLE; ENZYMOLOGY; GENE DUPLICATION; GENE EXPRESSION; GENETICS; GERMINATION; METABOLISM; NITROGEN FIXATION; PHASEOLUS; PHYLOGENY; PLANT GENE; PLANT GENOME; PLANT LEAF; PLANT ROOT; POLYPLOIDY; SOYBEAN;

AMIDOHYDROLASES; GENE DUPLICATION; GENE EXPRESSION; GENES, PLANT; GENOME, PLANT; GERMINATION; NITROGEN; NITROGEN FIXATION; PHASEOLUS; PHYLOGENY; PLANT LEAVES; PLANT PROTEINS; PLANT ROOTS; POLYPLOIDY; SOYBEANS;

GLYCINE MAX; PHASEOLUS VULGARIS;

EID: 84859726416     PISSN: 09819428     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plaphy.2012.03.002     Document Type: Article

References (32)

1. 2 fixation and composition of xylem exudate during nodule development. Plant Physiol. 1981, 68:1115-1122.
2. Schubert K.R. Products of biological nitrogen fixation in higher plants: synthesis, transport, and metabolism. Annu. Rev. Plant Physiol. 1986, 37:539-574.
3. Stasolla C., Katahira R., Thorpe T.A., Ashihara H. Purine and pyrimidine nucleotide metabolism in higher plants. J. Plant Physiol. 2003, 160:1271-1295.
4. Atkins C.A., Smith P.M.C. Ureide synthesis in legume nodules. Prokaryotic Nitrogen Fixation: A Model System for the Analysis of a Biological Process 2000, 559-587. Horizon Scientific Press, Norfolk. E.W. Triplett (Ed.).
5. Smith M.C., Atkins C.A. Purine biosynthesis. Big in cell division, even bigger in nitrogen assimilation. Plant Physiol. 2002, 128:793-802.
6. Todd C.D., Tipton P.A., Blevins D.G., Piedras P., Pineda M., Polacco J.C. Update on ureide degradation in legumes. J. Exp. Bot. 2006, 57:5-12.
7. Brychkova G., Alikulov Z., Fluhr R., Sagi M. A critical role for ureides in dark and senescence-induced purine remobilization is unmasked in the Atxdh1 Arabidopsis mutant. Plant J. 2008, 54:496-509.
8. Todd C.D., Polacco J.C. AtAAH encodes a protein with allantoate amidohydrolase activity from Arabidopsis thaliana. Planta 2006, 223:1108-1113.
9. Werner A.K., Sparkes I.A., Romeis T., Witte C.P. Identification, biochemical characterization, and subcellular localization of allantoate amidohydrolases from Arabidopsis and soybean. Plant Physiol. 2008, 146:418-430.
10. Werner A.K., Romeis T., Witte C.P. Ureide catabolism in Arabidopsis thaliana and Escherichia coli. Nat. Chem. Biol. 2010, 6:19-21.
11. Werner A.K., Witte C.P. The biochemistry of nitrogen mobilization: purine ring catabolism. Trends Plant Sci. 2011, 16:381-387.
12. Muñoz A., Piedras P., Aguilar M., Pineda M. Urea is a product of ureidoglycolate degradation in chickpea. Purification and characterization of the ureidoglycolate urea-lyase. Plant Physiol. 2001, 125:828-834.
13. Muñoz A., Raso M.J., Pineda M., Piedras P. Degradation of ureidoglycolate in French bean (Phaseolus vulgaris) is catalysed by a ubiquitous ureidoglycolate urea-lyase. Planta 2006, 224:175-184.
14. Muñoz A., Bannenberg G.L., Montero O., Cabello-Díaz J.M., Piedras P., Pineda M. An alternative pathway for ureide usage in legumes: enzymatic formation of a ureidoglycolate adduct in Cicer arietinum and Phaseolus vulgaris. J. Exp. Bot. 2011, 62:307-318.
15. Yang J., Han K.H. Functional characterization of allantoinase genes from Arabidopsis and a non-ureide-type legume black locust. Plant Physiol. 2004, 134:1039-1049.
16. Quiles F.A., Raso M.J., Pineda M., Piedras P. Ureide metabolism during seedling development in French bean (Phaseolus vulgaris). Physiologia Plantarum 2009, 135(2009):19-28.
17. Alamillo J.M., Díaz-Leal J.L., Sánchez-Moran M.A.V., Pinesa M. Molecular analysis of ureide accumulation under drought stress in Phaseolus vulgaris L. Plant Cell Environ. 2010, 33:1826-1837.
18. Quackenbush J., Cho J., Lee D., Liang F., Holt I., Karamycheva S., Parvizi B., Pertea G., Sultana R., White J. The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species. Nucleic Acids Res. 2001, 29:159-164.
19. Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., Zhang X.C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., Jackson S.A. Genome sequence of the palaeopolyploid soybean. Nature 2010, 463:178-183.
20. Raso M.J., Pineda M., Piedras P. Tissue abundance and characterization of two purified proteins with allantoinase activity from French bean (Phaseolus vulgaris). Physiologia Plantarum 2007, 131:355-366.
21. Atkins C.A., Ritchie A., Rowe P.B., McCairns E., Sauer D. De novo purine synthesis in nitrogen-fixing nodules of cowpea (Vigna unguiculata [L.] Walp.) and soybean (Glycine max [L.] Merr. Plant Physiol. 1982, 70:55-60.
22. 2 fixation or nitrate supply. Plant Biol. 2010, 12:60-69.
23. Bell J.A., Webb M.A. Immunoaffinity purification and comparison of allantoinases from soybean root nodules and cotyledons. Plant Physiol. 1995, 107:435-441.
24. Shoemaker R.C., Schlueter J., Doyle J.J. Paleopolyploidy and gene duplication in soybean and other legumes. Curr. Opin. Plant Biol. 2006, 9:104-109.
25. 4 photosynthesis. Int. J. Plant Sci. 2003, 164:S43-S54.
26. Ha M., Kim E.D., Chen Z.J. Duplicate genes increase expression diversity in closely related species and allopolyploids. PNAS 2009, 106:2295-2300.
27. Kim K., Shin J., Van K., Kim D., Lee S. Dynamic rearrangements determine genome organization and useful traits in soybean. Plant Physiol. 2009, 151:1066-1076.
28. Vogels G.D., Van der Drift C. Differential analysis of glyoxylate derivatives. Anal. Biochem. 1970, 33:143-157.
29. Jian B., Liu B., Bi Y., Hou W., Wu C., Han T. Validation of internal control for gene expression study in soybean by quantitative real-time PCR. BMC Mol. Biol. 2008, 9:59. 10.1186/1471-2199-9-59.
30. Pfaffl M.W. A new mathematical model for relative quantification in real time RT-PCR. Nucleic Acids Res. 2001, 29:2002-2007.
31. Ramirez M., Graham M.A., Blanco-Lopez L., Silvente S., Medrano-Soto A., Blair M.W., Hernandez G., Vance C.P., Lara M. Sequencing and analysis of common bean ESTs. Building a foundation for functional genomics. Plant Physiol. 2005, 137:1211-1227.
32. J.L. Díaz-Leal, G. Gálvez-Valdivieso, J. Férnandez, M. Pineda, J.M. Alamillo. Developmental effects on ureide levels are mediated by tissue specific regulation of allantoinase in Phaseolus vulgaris L. J. Exp. Bot. doi:10.1093/jxb/ers090.