Structure and species composition of ectomycorrhizal fungal communities colonizing seedlings and adult trees of Pinus montezumae in Mexican neotropical forests

FEMS Microbiology Ecology

Volumn 80, Issue 2, 2012, Pages 479-487

  Reverchon, Frédérique ^a   del Pilar Ortega Larrocea, María ^a   Bonilla Rosso, Germán ^b   Pérez Moreno, Jesús ^c,d  

^a UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

^b INSTITUTO DE ECOLOGÍA   (Mexico)

^c Colegio de Posgraduados ^*  (Mexico)

^d UNIVERSITY OF SHEFFIELD   (United Kingdom)

Author keywords

Atheliaceae; Ectomycorrhizas; Inocybe; Phylogenetic diversity; Tree growth stages

Indexed keywords

ABUNDANCE; ADULT; COLONIZATION; COMMUNITY COMPOSITION; CONIFEROUS TREE; ECTOMYCORRHIZA; FOREST ECOSYSTEM; FUNGUS; NEOTROPICAL REGION; PHYLOGENETICS; PROPAGULE; SEEDLING; SPECIES RICHNESS; TAXONOMY;

ADULT; ARTICLE; CLASSIFICATION; ECOSYSTEM; FEMALE; GENETICS; GROWTH, DEVELOPMENT AND AGING; HUMAN; MEXICO; MICROBIOLOGY; MYCORRHIZA; PHYLOGENY; PHYSIOLOGY; PINE; PLANT ROOT; SEEDLING; TREE;

ADULT; ECOSYSTEM; FEMALE; HUMANS; MEXICO; MYCORRHIZAE; PHYLOGENY; PINUS; PLANT ROOTS; SEEDLING; TREES;

MEXICO [NORTH AMERICA];

ATHELIACEAE; CORTINARIACEAE; FUNGI; INOCYBE; OTUS; PINUS MONTEZUMAE; SEBACINACEAE;

EID: 84859563490     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2012.01314.x     Document Type: Article

References (50)

1. Aučina A, Rudawska M, Leski T, Ryliškis D, Pietras M & Riepšas E (2011) Ectomycorrhizal fungal communities on seedlings and conspecific trees of Pinus mugo grown on the coastal dunes of the Curonian Spit in Lithuania. Mycorrhiza 21: 237-245.
2. Bellemain E, Carlsen T, Brochmann C, Coissac E, Taberlet P & Kauserud H (2010) ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC Microbiol 10: 189.
3. Cairney JWG & Burke RM (1994) Fungal enzymes degrading plant cell walls: their possible significance in the ectomycorrhizal symbiosis. Mycol Res 98: 1345-1356.
4. Cline ET, Ammirati JF & Edmonds RL (2005) Does proximity to mature trees influence ectomycorrhizal fungus communities of Douglas-fir seedlings? New Phytol 166: 993-1009.
5. Dahlberg A, Jonsson L & Nylund JE (1997) Species diversity and distribution of biomass above and below ground among ectomycorrhizal fungi in an old-growth Norway spruce forest in south Sweden. Can J Bot 75: 1323-1335.
6. Ding Q, Liang Y, Legendre P, He XH, Pei KQ, Du XJ & Ma KP (2011) Diversity and composition of ectomycorrhizal community on seedling roots: the role of host preference and soil origin. Mycorrhiza 21: 669-680.
7. Durall DM, Jones MD, Wright EF, Kroeger P & Coates KD (1999) Species richness of ectomycorrhizal fungi in cutblocks of different sizes in the Interior Cedar-Hemlock forests of northwestern British Columbia: sporocarps and ectomycorrhizae. Can J For Res 29: 1322-1332.
8. Gao Q & Yang ZL (2010) Ectomycorrhizal fungi associated with two species of Kobresia in an alpine meadow in the eastern Himalaya. Mycorrhiza 20: 281-287.
9. Gardes M & Bruns TD (1993) ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Mol Ecol 2: 113-118.
10. Glowa KR, Arocena JM & Massicotte HB (2004) Properties of soils influenced by ectomycorrhizal fungi in hybrid spruce [Picea glauca × engelmannii (Moench.) Voss.]. Can J Soil Sci 84: 91-102.
11. Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W & Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321.
12. Hall TA (1999) BioEdit: a friendly biological sequence alignment editor and analysis program for Window 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
13. Hedh J, Wallander H & Erland S (2008) Ectomycorrhizal mycelial species composition in apatite amended and non-amended mesh bags buried in a phosphorus-poor spruce forest. Mycol Res 112: 681-688.
14. Hibbett DS, Ohman A, Glotzer D, Nuhn M, Kirk P & Nilsson RH (2011) Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences. Fungal Biol Rev 25: 38-47.
15. Horton TR, Bruns TD & Parker VT (1999) Ectomycorrhizal fungi associated with Arctostaphylos contribute to Pseudotsuga menziesii establishment. Can J Bot 77: 93-102.
16. Jonsson L, Dahlberg A, Nilsson MC, Karén O & Zackrisson O (1999) Continuity of ectomycorrhizal fungi in self-regenerating boreal Pinus sylvestris forests studied by comparing mycobiont diversity on seedlings and mature trees. New Phytol 142: 151-162.
17. Kalliokoski T, Pennanen T, Nygren P, Sievänen R & Helmisaari HS (2010) Belowground interspecific competition in mixed boreal forests: fine root and ectomycorrhiza characteristics along stand developmental stage and soil fertility gradients. Plant Soil 330: 73-89.
18. Keane TM, Creevey CJ, Pentony MM, Naughton TJ & McInerney JO (2006) Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evol Biol 6: 29.
19. Kembel SW, Cowan PD, Helmus MR, Cornwell WK, Morlon H, Ackerly DD, Bloomberg SP & Webb CO (2010) Picante: R tools for integrating phylogenies and ecology. Bioinformatics 26: 1463-1464.
20. Kennedy PG, Garibay-Orijel R, Higgins LM & Angeles-Arguiz R (2011) Ectomycorrhizal fungi in Mexican Alnus forests support the host co-migration hypothesis and continental-scale patterns in phylogeography. Mycorrhiza 21: 559-568.
21. Kõljalg U, Larsson KH, Abarenkov K et al. (2005) UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. New Phytol 166: 1063-1068.
22. Leopold AS (1950) Vegetation zones of Mexico. Ecology 31: 507-518.
23. Matsuda Y & Hijii N (2004) Ectomycorrhizal fungal communities in an Abies firma forest, with special reference to ectomycorrhizal associations between seedlings and mature trees. Can J Bot 82: 822-829.
24. Nara K (2006) Ectomycorrhizal networks and seedling establishment during early primary succession. New Phytol 169: 169-178.
25. Nilsson RH, Bok G, Ryberg E, Kristiansson E & Hallenberg N (2009) A software pipeline for processing and identification of fungal ITS sequences. Source Code Biol Med 4: 1.
26. Nilsson RH, Veldre V, Hartmann M, Unterseher M, Amend A, Bergsten J, Kristiansson E, Ryberg M, Jumpponen A & Abarenkov K (2010) An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology. Fungal Ecol 3: 284-287.
27. Notredame C, Higgins DG & Heringa J (2000) T-Coffee: a novel method for fast and accurate multiple sequence alignment. J Mol Biol 302: 205-217.
28. Oksanen J, Kindt R, Legendre P & O'Hara B (2007) vegan: Community Ecology Package. R package version 1.8-6. Available at:
29. Palfner G, Casanova-Katny MA & Read DJ (2005) The mycorrhizal community in a forest chronosequence of Sitka spruce [Picea sitchensis (Bong.) Carr.] in Northern England. Mycorrhiza 15: 571-579.
30. Pérez-Moreno J & Read DJ (2004) Los hongos ectomicorrizicos, lazos vivientes que conectan y nutren a los arboles en la naturaleza. Interciencia 29: 239-247.
31. Perry JP (1991) The Pines of Mexico and Central America. Timber Press, Oregon.
32. Peter M, Ayer F & Egli S (2001a) Nitrogen addition in a Norway spruce stand altered macromycete sporocarp production and below-ground ectomycorrhizal species composition. New Phytol 149: 311-325.
33. Peter M, Ayer F, Simon E & Honegger R (2001b) Above- and below-ground community structure of ectomycorrhizal fungi in three Norway spruce (Picea abies) stands in Switzerland. Can J Bot 79: 1134-1151.
34. Peter M, Ayer F, Cudlín P & Egli S (2008) Belowground ectomycorrhizal communities in three Norway spruce stands with different degrees of decline in the Czech Republic. Mycorrhiza 18: 157-169.
35. Reverchon F, Ortega-Larrocea MP, Pérez-Moreno J, Peña-Ramírez VM & Siebe C (2010a) Changes in community structure of ectomycorrhizal fungi associated with Pinus montezumae across a volcanic soil chronosequence at Sierra Chichinautzin, Mexico. Can J For Res 40: 1165-1174.
36. Reverchon F, Ortega-Larrocea MP & Pérez-Moreno J (2010b) Saprophytic fungal communities change in diversity and species composition across a volcanic soil chronosequence at Sierra del Chichinautzin, Mexico. Ann Microbiol 60: 217-226.
37. Reverchon F, Ortega-Larrocea MP & Pérez-Moreno J (2011) Soil factors influencing ectomycorrhizal sporome distribution in neotropical forests dominated by Pinus montezumae, Mexico. Mycoscience, in press. doi: 10.1007/s10267-011-0136-1.
38. Ryberg M, Nilsson RH, Kristiansson E, Töpel M, Jacobsson S & Larsson E (2008) Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota). BMC Evol Biol 8: 50.
39. Ryberg M, Larsson E & Molau U (2009) Ectomycorrhizal diversity on Dryas octopetala and Salix reticulata in an alpine cliff ecosystem. Arct Antarct Alp Res 41: 506-514.
40. Schloss PD, Westcott SL, Ryabin T et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
41. Simard SW & Durall DM (2004) Mycorrhizal networks: a review of their extent, function, and importance. Can J Bot 82: 1140-1165.
42. Smith SE & Read DJ (2008) Mycorrhizal Symbiosis, 3rd edn. Academic Press, London.
43. Taylor AFS & Alexander IJ (1989) Demography and population dynamics of ectomycorrhizas of Sitka spruce fertilized with N. Agr Ecosyst Environ 28: 493-496.
44. Tedersoo L, Suvi T, Larsson E & Ljalga K (2006) Diversity and community structure of ectomycorrhizal fungi in a wooded meadow. Mycol Res 110: 734-748.
45. Teste FP, Schmidt MG, Berch SM, Bulmer C & Egger KN (2004) Effects of ectomycorrhizal inoculants on survival and growth of interior Douglas-fir seedlings on reforestation sites and partially rehabilitated landings. Can J For Res 34: 2074-2088.
46. Teste FP, Simard SW & Durall DM (2009) Role of mycorrhizal networks and tree proximity in ectomycorrhizal colonization of planted seedlings. Fungal Ecol 2: 21-30.
47. Vallino M, Zampieri E, Murat C, Girlanda M, Picarella S, Pitet M, Portis E, Martino E & Perotto S (2011) Specific regions in theSod1 locus of the ericoid mycorrhizal fungus Oidiodendron maius from metal-enriched soils show a different sequence polymorphism. FEMS Microbiol Ecol 75: 321-331.
48. Vásquez Gassibe P, Fraile Fabero R, Hernández-Rodríguez M, Oria-De-Rueda JA & Martín-Pinto P (2011) Fungal community succession following wildfire in a Mediterranean vegetation type dominated by Pinus pinaster in Northwest Spain. For Ecol Manage 262: 655-662.
49. Viveros-Viveros H, Sáenz-Romero C, López-Upton J & Vargas-Hernández JJ (2007) Growth and frost damage variation among Pinus pseudostrobus, P. montezumae and P. hartwegii tested in Michoacán, México. For Ecol Manage 253: 81-88.
50. Wang Q & Guo LD (2010) Ectomycorrhizal community composition of Pinus tabulaeformis assessed by ITS-RFLP and ITS sequences. Botany 88: 590-595.