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Volumn 22, Issue 4, 2012, Pages 802-809

A vast collection of microbial genes that are toxic to bacteria

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL TOXIN; DNA FRAGMENT; SMALL UNTRANSLATED RNA;

EID: 84859531709     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.133850.111     Document Type: Article
Times cited : (62)

References (44)
  • 1
    • 63449138496 scopus 로고    scopus 로고
    • Escherichia coli MazF leads to the simultaneous selective synthesis of both "death proteins" and "survival proteins."
    • doi: 10.1371/journal.pgen.1000390
    • Amitai S, Kolodkin-Gal I, Hananya-Meltabashi M, Sacher A, Engelberg- Kulka H. 2009. Escherichia coli MazF leads to the simultaneous selective synthesis of both "death proteins" and "survival proteins." PLoS Genet 5: e1000390. doi: 10.1371/journal.pgen.1000390.
    • (2009) PLoS Genet , vol.5
    • Amitai, S.1    Kolodkin-Gal, I.2    Hananya-Meltabashi, M.3    Sacher, A.E.-.K.H.4
  • 3
    • 0020505144 scopus 로고
    • Cloning of the promoters of an Escherichia coli rRNA gene. New experimental system to study the regulation of rRNA transcription
    • Boros I, Kiss A, Sain B, Somlyai G, Venetianer P. 1983. Cloning of the promoters of an Escherichia coli rRNA gene. New experimental system to study the regulation of rRNA transcription. Gene 22: 191-201.
    • (1983) Gene , vol.22 , pp. 191-201
    • Boros, I.1    Kiss, A.2    Sain, B.3    Somlyai, G.4    Venetianer, P.5
  • 4
    • 0032957449 scopus 로고    scopus 로고
    • DnaA boxes are important elements in setting the initiation mass of Escherichia coli
    • Christensen BB, Atlung T, Hansen FG. 1999. DnaA boxes are important elements in setting the initiation mass of Escherichia coli. J Bacteriol 181: 2683-2688. (Pubitemid 29211079)
    • (1999) Journal of Bacteriology , vol.181 , Issue.9 , pp. 2683-2688
    • Christensen, B.B.1    Atlung, T.2    Hansen, F.G.3
  • 5
    • 0027381536 scopus 로고
    • Replicatively active complexes of DnaA protein and the Escherichia coli chromosomal origin observed in the electron microscope
    • DOI 10.1006/jmbi.1993.1481
    • Crooke E, Thresher R, Hwang DS, Griffith J, Kornberg A. 1993. Replicatively active complexes of DnaA protein and the Escherichia coli chromosomal origin observed in the electron microscope. J Mol Biol 233: 16-24. (Pubitemid 23288908)
    • (1993) Journal of Molecular Biology , vol.233 , Issue.1 , pp. 16-24
    • Crooke, E.1    Thresher, R.2    Hwang, D.S.3    Griffith, J.4    Kornberg, A.5
  • 7
    • 0026515473 scopus 로고
    • Structure of the dnaA and DnaA-box region in the Mycoplasma capricolum chromosome: Conservation and variations in the course of evolution
    • Fujita MQ, Yoshikawa H, Ogasawara N. 1992. Structure of the dnaA and DnaA-box region in the Mycoplasma capricolum chromosome: conservation and variations in the course of evolution. Gene 110: 17-23.
    • (1992) Gene , vol.110 , pp. 17-23
    • Fujita, M.Q.1    Yoshikawa, H.2    Ogasawara, N.3
  • 10
    • 0037228930 scopus 로고    scopus 로고
    • Escherichia coli cells with increased levels of DnaA and deficient in recombinational repair have decreased viability
    • DOI 10.1128/JB.185.2.630-644.2003
    • Grigorian AV, Lustig RB, Guzman EC, Mahaffy JM, Zyskind JW. 2003. Escherichia coli cells with increased levels of DnaA and deficient in recombinational repair have decreased viability. J Bacteriol 185: 630-644. (Pubitemid 36070490)
    • (2003) Journal of Bacteriology , vol.185 , Issue.2 , pp. 630-644
    • Grigorian, A.V.1    Lustig, R.B.2    Guzman, E.C.3    Mahaffy, J.M.4    Zyskind, J.W.5
  • 11
    • 5644239810 scopus 로고    scopus 로고
    • Escherichia coli mazEF-mediated cell death as a defense mechanism that inhibits the spread of phage P1
    • DOI 10.1007/s00438-004-1048-y
    • Hazan R, Engelberg-Kulka H. 2004. Escherichia coli mazEF-mediated cell death as a defense mechanism that inhibits the spread of phage P1. Mol Genet Genomics 272: 227-234. (Pubitemid 39371524)
    • (2004) Molecular Genetics and Genomics , vol.272 , Issue.2 , pp. 227-234
    • Hazan, R.1    Engelberg-Kulka, H.2
  • 12
    • 2442696541 scopus 로고    scopus 로고
    • Escherichia coli mazEF-mediated cell death is triggered by various stressful conditions
    • DOI 10.1128/JB.186.11.3663-3669.2004
    • Hazan R, Sat B, Engelberg-Kulka H. 2004. Escherichia coli mazEF-mediated cell death is triggered by various stressful conditions. J Bacteriol 186: 3663-3669. (Pubitemid 38661567)
    • (2004) Journal of Bacteriology , vol.186 , Issue.11 , pp. 3663-3669
    • Hazan, R.1    Sat, B.2    Engelberg-Kulka, H.3
  • 14
    • 74249095519 scopus 로고    scopus 로고
    • CRISPR/Cas, the immune system of bacteria and archaea
    • Horvath P, Barrangou R. 2010. CRISPR/Cas, the immune system of bacteria and archaea. Science 327: 167-170.
    • (2010) Science , vol.327 , pp. 167-170
    • Horvath, P.1    Barrangou, R.2
  • 15
    • 0036267740 scopus 로고    scopus 로고
    • Identification of genes that are associated with DNA repeats in prokaryotes
    • DOI 10.1046/j.1365-2958.2002.02839.x
    • Jansen R, Embden JD, Gaastra W, Schouls LM. 2002. Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol 43: 1565-1575. (Pubitemid 34595547)
    • (2002) Molecular Microbiology , vol.43 , Issue.6 , pp. 1565-1575
    • Jansen, R.1    Van Embden, J.D.A.2    Gaastra, W..3    Schouls, L.M.4
  • 16
    • 0029083946 scopus 로고
    • Programmed cell death in bacteria: Proteic plasmid stabilization systems
    • Jensen RB, Gerdes K. 1995. Programmed cell death in bacteria: proteic plasmid stabilization systems. Mol Microbiol 17: 205-210.
    • (1995) Mol Microbiol , vol.17 , pp. 205-210
    • Jensen, R.B.1    Gerdes, K.2
  • 17
    • 76949086750 scopus 로고    scopus 로고
    • Regulation of the replication cycle: Conserved and diverse regulatory systems for DnaA and oriC
    • Katayama T, Ozaki S, Keyamura K, Fujimitsu K. 2010. Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC. Nat Rev Microbiol 8: 163-170.
    • (2010) Nat Rev Microbiol , vol.8 , pp. 163-170
    • Katayama, T.1    Ozaki, S.2    Keyamura, K.3    Fujimitsu, K.4
  • 18
    • 0032190630 scopus 로고    scopus 로고
    • Negative control of replication initiation by a novel chromosomal locus exhibiting exceptional affinity for Escherichia coli DnaA protein
    • Kitagawa R, Ozaki T, Moriya S, Ogawa T. 1998. Negative control of replication initiation by a novel chromosomal locus exhibiting exceptional affinity for Escherichia coli DnaA protein. Genes Dev 12: 3032-3043. (Pubitemid 28469305)
    • (1998) Genes and Development , vol.12 , Issue.19 , pp. 3032-3043
    • Kitagawa, R.1    Ozaki, T.2    Moriya, S.3    Ogawa, T.4
  • 19
    • 78951480425 scopus 로고    scopus 로고
    • Escherichia coli rnlA and rnlB compose a novel toxin-antitoxin system
    • Koga M, Otsuka Y, Lemire S, Yonesaki T. 2011. Escherichia coli rnlA and rnlB compose a novel toxin-antitoxin system. Genetics 187: 123-130.
    • (2011) Genetics , vol.187 , pp. 123-130
    • Koga, M.1    Otsuka, Y.2    Lemire, S.3    Yonesaki, T.4
  • 20
    • 67650447476 scopus 로고    scopus 로고
    • Fifteen years of microbial genomics: Meeting the challenges and fulfilling the dream
    • Kyrpides NC. 2009. Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream. Nat Biotechnol 27: 627-632.
    • (2009) Nat Biotechnol , vol.27 , pp. 627-632
    • Kyrpides, N.C.1
  • 21
    • 77955628762 scopus 로고    scopus 로고
    • Persister cells
    • Lewis K. 2010. Persister cells. Annu Rev Microbiol 64: 357-372.
    • (2010) Annu Rev Microbiol , vol.64 , pp. 357-372
    • Lewis, K.1
  • 23
    • 0242621134 scopus 로고    scopus 로고
    • Burkholderia and emerging pathogens in cystic fibrosis
    • LiPuma JJ. 2003. Burkholderia and emerging pathogens in cystic fibrosis. Semin Respir Crit Care Med 24: 681-692.
    • (2003) Semin Respir Crit Care Med , vol.24 , pp. 681-692
    • LiPuma, J.J.1
  • 24
    • 0037079680 scopus 로고    scopus 로고
    • A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis
    • Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV. 2002. A DNA repair systemspecific for thermophilic archaea and bacteria predicted by genomic context analysis. Nucleic Acids Res 30: 482-496. (Pubitemid 34679610)
    • (2002) Nucleic Acids Research , vol.30 , Issue.2 , pp. 482-496
    • Makarova, K.S.1    Aravind, L.2    Grishin, N.V.3    Rogozin, I.B.4    Koonin, E.V.5
  • 26
    • 0141860088 scopus 로고    scopus 로고
    • Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
    • DOI 10.1101/gad.1127103
    • Masse E, Escorcia FE, Gottesman S. 2003. Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes Dev 17: 2374-2383. (Pubitemid 37214786)
    • (2003) Genes and Development , vol.17 , Issue.19 , pp. 2374-2383
    • Masse, E.1    Escorcia, F.E.2    Gottesman, S.3
  • 27
    • 0035980252 scopus 로고    scopus 로고
    • Regulation of chromosomal replication by DnaA protein availability in Escherichia coli: Effects of the datA region
    • Morigen, Boye E, Skarstad K, Lobner-Olesen A. 2001. Regulation of chromosomal replication by DnaA protein availability in Escherichia coli: effects of the datA region. Biochim Biophys Acta 1521: 73-80.
    • (2001) Biochim Biophys Acta , vol.1521 , pp. 73-80
    • Morigen, B.E.1    Skarstad, K.2    Lobner-Olesen, A.3
  • 28
    • 0036015656 scopus 로고    scopus 로고
    • The datA locus predominantly contributes to the initiator titration mechanism in the control of replication initiation in Escherichia coli
    • DOI 10.1046/j.1365-2958.2002.02969.x
    • Ogawa T, Yamada Y, Kuroda T, Kishi T, Moriya S. 2002. The datA locus predominantly contributes to the initiator titration mechanism in the control of replication initiation in Escherichia coli. Mol Microbiol 44: 1367-1375. (Pubitemid 34595766)
    • (2002) Molecular Microbiology , vol.44 , Issue.5 , pp. 1367-1375
    • Ogawa, T.1    Yamada, Y.2    Kuroda, T.3    Kishi, T.4    Moriya, S.5
  • 29
    • 34548329975 scopus 로고    scopus 로고
    • Annotation of bacterial and archaeal genomes: Improving accuracy and consistency
    • DOI 10.1021/cr068308h
    • Overbeek R, Bartels D, Vonstein V, Meyer F. 2007. Annotation of bacterial and archaeal genomes: improving accuracy and consistency. Chem Rev 107: 3431-3447. (Pubitemid 47333547)
    • (2007) Chemical Reviews , vol.107 , Issue.8 , pp. 3431-3447
    • Overbeek, R.1    Bartels, D.2    Vonstein, V.3    Meyer, F.4
  • 30
    • 14244266086 scopus 로고    scopus 로고
    • Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes
    • DOI 10.1093/nar/gki201
    • Pandey DP, Gerdes K. 2005. Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes. Nucleic Acids Res 33: 966-976. (Pubitemid 41430517)
    • (2005) Nucleic Acids Research , vol.33 , Issue.3 , pp. 966-976
    • Pandey, D.P.1    Gerdes, K.2
  • 31
    • 33845903833 scopus 로고    scopus 로고
    • Drugs for bad bugs: Confronting the challenges of antibacterial discovery
    • DOI 10.1038/nrd2201, PII NRD2201
    • Payne DJ, Gwynn MN, Holmes DJ, Pompliano DL. 2007. Drugs for bad bugs: Confronting the challenges of antibacterial discovery. Nat Rev Drug Discov 6: 29-40. (Pubitemid 46020284)
    • (2007) Nature Reviews Drug Discovery , vol.6 , Issue.1 , pp. 29-40
    • Payne, D.J.1    Gwynn, M.N.2    Holmes, D.J.3    Pompliano, D.L.4
  • 32
    • 0029972435 scopus 로고    scopus 로고
    • Exclusion of T4 phage by the hok/sok killer locus from plasmid R1
    • Pecota DC, Wood TK. 1996. Exclusion of T4 phage by the hok/sok killer locus from plasmid R1. J Bacteriol 178: 2044-2050. (Pubitemid 26110551)
    • (1996) Journal of Bacteriology , vol.178 , Issue.7 , pp. 2044-2050
    • Pecota, D.C.1    Wood, T.K.2
  • 33
    • 36849091434 scopus 로고    scopus 로고
    • Bridging the knowledge gaps in vaccine design
    • DOI 10.1038/nbt1207-1361, PII NBT12071361
    • Rappuoli R. 2007. Bridging the knowledge gaps in vaccine design. Nat Biotechnol 25: 1361-1366. (Pubitemid 350233122)
    • (2007) Nature Biotechnology , vol.25 , Issue.12 , pp. 1361-1366
    • Rappuoli, R.1
  • 34
    • 75549086595 scopus 로고    scopus 로고
    • REBASE - A database for DNA restriction and modification: Enzymes, genes and genomes
    • Roberts RJ, Vincze T, Posfai J, Macelis D. 2010. REBASE - a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res 38: D234-D236.
    • (2010) Nucleic Acids Res , vol.38
    • Roberts, R.J.1    Vincze, T.2    Posfai, J.3    Macelis, D.4
  • 35
    • 0024462061 scopus 로고
    • In vivo studies of DnaA binding to the origin of replication of Escherichia coli
    • Samitt CE, Hansen FG, Miller JF, Schaechter M. 1989. In vivo studies of DnaA binding to the origin of replication of Escherichia coli. EMBO J 8: 989-993. (Pubitemid 19273267)
    • (1989) EMBO Journal , vol.8 , Issue.3 , pp. 989-993
    • Samitt, C.E.1    Hansen, F.G.2    Miller, J.F.3    Schaechter, M.4
  • 37
    • 36249021315 scopus 로고    scopus 로고
    • Genome-wide experimental determination of barriers to horizontal gene transfer
    • DOI 10.1126/science.1147112
    • Sorek R, Zhu Y, Creevey CJ, Francino MP, Bork P, Rubin EM. 2007. Genomewide experimental determination of barriers to horizontal gene transfer. Science 318: 1449-1452. (Pubitemid 350208955)
    • (2007) Science , vol.318 , Issue.5855 , pp. 1449-1452
    • Sorek, R.1    Zhu, Y.2    Creevey, C.J.3    Francino, M.P.4    Bork, P.5    Rubin, E.M.6
  • 38
    • 39149142575 scopus 로고    scopus 로고
    • CRISPR - A widespread system that provides acquired resistance against phages in bacteria and archaea
    • DOI 10.1038/nrmicro1793, PII NRMICRO1793
    • Sorek R, Kunin V, Hugenholtz P. 2008. CRISPR - a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat Rev Microbiol 6: 181-186. (Pubitemid 351256313)
    • (2008) Nature Reviews Microbiology , vol.6 , Issue.3 , pp. 181-186
    • Sorek, R.1    Kunin, V.2    Hugenholtz, P.3
  • 39
    • 78650045540 scopus 로고    scopus 로고
    • The phage-host arms race: Shaping the evolution of microbes
    • Stern A, Sorek R. 2011. The phage-host arms race: shaping the evolution of microbes. Bioessays 33: 43-51.
    • (2011) Bioessays , vol.33 , pp. 43-51
    • Stern, A.1    Sorek, R.2
  • 41
    • 63449102873 scopus 로고    scopus 로고
    • Bacterial toxin-antitoxin systems: More than selfish entities?
    • doi: 10.1371/journal.pgen.1000437
    • VanMelderen L, Saavedra De Bast M. 2009. Bacterial toxin-antitoxin systems: more than selfish entities? PLoS Genet 5: e1000437. doi: 10.1371/journal.pgen.1000437.
    • (2009) PLoS Genet , vol.5
    • VanMelderen, L.1    Saavedra De Bast, M.2
  • 43
    • 60149089144 scopus 로고    scopus 로고
    • Regulatory RNAs in bacteria
    • Waters LS, Storz G. 2009. Regulatory RNAs in bacteria. Cell 136: 615-628.
    • (2009) Cell , vol.136 , pp. 615-628
    • Waters, L.S.1    Storz, G.2
  • 44
    • 58549118539 scopus 로고    scopus 로고
    • Using shotgun sequence data to find active restriction enzyme genes
    • doi: 10.1093/nar/gkn883
    • Zheng Y, Posfai J, Morgan RD, Vincze T, Roberts RJ. 2009. Using shotgun sequence data to find active restriction enzyme genes. Nucleic Acids Res 37: e1. doi: 10.1093/nar/gkn883.
    • (2009) Nucleic Acids Res , vol.37
    • Zheng, Y.1    Posfai, J.2    Morgan, R.D.3    Vincze, T.4    Roberts, R.J.5


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