-
1
-
-
0025294528
-
Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
-
Amann RI, et al. 1990. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:1919-1925. (Pubitemid 20202165)
-
(1990)
Applied and Environmental Microbiology
, vol.56
, Issue.6
, pp. 1919-1925
-
-
Amann, R.I.1
Binder, B.J.2
Olson, R.J.3
Chisholm, S.W.4
Devereux, R.5
Stahl, D.A.6
-
2
-
-
33845286495
-
Adherent-invasive Escherichia coli and Crohn's disease
-
DOI 10.1097/MOG.0b013e3280105a38, PII 0000157420070100000005
-
Barnich N, Darfeuille-Michaud A. 2007. Adherent-invasive Escherichia coli and Crohn's disease. Curr. Opin. Gastroenterol. 23:16-20. doi: 10.1097/MOG.0b013e3280105a38. (Pubitemid 44875904)
-
(2007)
Current Opinion in Gastroenterology
, vol.23
, Issue.1
, pp. 16-20
-
-
Barnich, N.1
Darfeuille-Michaud, A.2
-
3
-
-
0031692488
-
Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes
-
Franks AH, et al. 1998. Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes. Appl. Environ. Microbiol. 64: 3336-3345. (Pubitemid 28411456)
-
(1998)
Applied and Environmental Microbiology
, vol.64
, Issue.9
, pp. 3336-3345
-
-
Franks, A.H.1
Harmsen, H.J.M.2
Raangs, G.C.3
Jansen, G.J.4
Schut, F.5
Welling, G.W.6
-
4
-
-
0020468178
-
Acute viral enteritis and exacerbations of inflammatory bowel disease
-
Gebhard RL, et al. 1982. Acute viral enteritis and exacerbations of inflammatory bowel disease. Gastroenterology 83:1207-1209. (Pubitemid 13235919)
-
(1982)
Gastroenterology
, vol.83
, Issue.6
, pp. 1207-1209
-
-
Gebhard, R.L.1
Greenberg, H.B.2
Singh, N.3
-
5
-
-
67650973314
-
Increased short- and long-term risk of inflammatory bowel disease after salmonella or campylobacter gastroenteritis
-
Gradel KO, et al. 2009. Increased short- and long-term risk of inflammatory bowel disease after salmonella or campylobacter gastroenteritis. Gastroenterology 137:495-501.
-
(2009)
Gastroenterology
, vol.137
, pp. 495-501
-
-
Gradel, K.O.1
-
6
-
-
0036275614
-
Extensive set of 16S rRNA-based probes for detection of bacteria in human feces
-
DOI 10.1128/AEM.68.6.2982-2990.2002
-
Harmsen HJM, Raangs GC, He T, Degener JE, Welling GW. 2002. Extensive set of 16S rRNA-based probes for detection of bacteria in human feces. Appl. Environ. Microbiol. 68:2982-2990. (Pubitemid 34602022)
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.6
, pp. 2982-2990
-
-
Harmsen, H.J.M.1
Raangs, G.C.2
He, T.3
Degener, J.E.4
Welling, G.W.5
-
7
-
-
0033781871
-
Development of 16S rRNA-based probes for the Coriobacterium group and the Atopobium cluster and their application for enumeration of Coriobacteriaceae in human feces from volunteers of different age groups
-
Harmsen HJM, et al. 2000. Development of 16S rRNA-based probes for the Coriobacterium group and the Atopobium cluster and their application for enumeration of Coriobacteriaceae in human feces from volunteers of different age groups. Appl. Environ. Microbiol. 66:4523-4527.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4523-4527
-
-
Harmsen, H.J.M.1
-
9
-
-
0035084086
-
A new fecal calprotectin test for colorectal neoplasia: Clinical results and comparison with previous method
-
Johne B, Kronborg O, Ton HI, Kristinsson J, Fuglerud P. 2001. A new fecal calprotectin test for colorectal neoplasia. Clinical results and comparison with previous method. Scand. J. Gastroenterol. 36:291-296. (Pubitemid 32234579)
-
(2001)
Scandinavian Journal of Gastroenterology
, vol.36
, Issue.3
, pp. 291-296
-
-
Johne, B.1
Kronborg, O.2
Ton, H.I.3
Kristinsson, J.4
Fuglerud, P.5
-
10
-
-
0036741464
-
Mucosal and invading bacteria in patients with inflammatory bowel disease compared with controls
-
Kleessen B, Kroesen AJ, Buhr HJ, Blaut M. 2002. Mucosal and invading bacteria in patients with inflammatory bowel disease compared with controls. Scand. J. Gastroenterol. 37:1034-1041.
-
(2002)
Scand. J. Gastroenterol.
, vol.37
, pp. 1034-1041
-
-
Kleessen, B.1
Kroesen, A.J.2
Buhr, H.J.3
Blaut, M.4
-
11
-
-
77649194674
-
Crohn's disease-associated adherent-invasive E. coli are selectively favoured by impaired autophagy to replicate intracellularly
-
Lapaquette P, Glasser A, Huett A, Xavier RJ, Darfeuille-Michaud A. 2010. Crohn's disease-associated adherent-invasive E. coli are selectively favoured by impaired autophagy to replicate intracellularly. Cell. Microbiol. 12:99-113.
-
(2010)
Cell. Microbiol.
, vol.12
, pp. 99-113
-
-
Lapaquette, P.1
Glasser, A.2
Huett, A.3
Xavier, R.J.4
Darfeuille-Michaud, A.5
-
12
-
-
9344247522
-
Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment
-
Manz W, Amann R, Ludwig W, Vancanneyt M, Schleifer KH. 1996. Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga-Flavobacter- Bacteroides in the natural environment. Microbiology 142:1097-1106. (Pubitemid 26154919)
-
(1996)
Microbiology
, vol.142
, Issue.5
, pp. 1097-1106
-
-
Manz, W.1
Amann, R.2
Ludwig, W.3
Vancanneyt, M.4
Schleifer, K.-H.5
-
13
-
-
44449106055
-
A microbial symbiosis factor prevents intestinal inflammatory disease
-
DOI 10.1038/nature07008, PII NATURE07008
-
Mazmanian SK, Round JL, Kasper DL. 2008. A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 453:620-625. (Pubitemid 351769307)
-
(2008)
Nature
, vol.453
, Issue.7195
, pp. 620-625
-
-
Mazmanian, S.K.1
Round, J.L.2
Kasper, D.L.3
-
14
-
-
33846437840
-
Bacteria and mucosal immunity
-
DOI 10.1016/S1590-8658(07)60005-X, PII S159086580760005X
-
Monteleone G, et al. 2006. Bacteria and mucosal immunity. Dig. Liver Dis. 38(Suppl. 2):S256-S260. (Pubitemid 46140764)
-
(2006)
Digestive and Liver Disease
, vol.38
, Issue.SUPPL. 2
-
-
Monteleone, G.1
Peluso, I.2
Fina, D.3
Caruso, R.4
Andrei, F.5
Tosti, C.6
Pallone, F.7
-
15
-
-
0042703463
-
Emerging role of calprotectin in gastroenterology
-
DOI 10.1046/j.1440-1746.2003.03014.x
-
Poullis A, Foster R, Mendall MA, Fagerhol MK. 2003. Emerging role of calprotectin in gastroenterology. J. Gastroenterol. Hepatol. 18:756-762. (Pubitemid 36936565)
-
(2003)
Journal of Gastroenterology and Hepatology
, vol.18
, Issue.7
, pp. 756-762
-
-
Poullis, A.1
Foster, R.2
Mendall, M.A.3
Fagerhol, M.K.4
-
16
-
-
0036113795
-
Review article: Faecal markers in the assessment of activity in inflammatory bowel disease
-
DOI 10.1046/j.1365-2036.2002.01196.x
-
Poullis A, Foster R, Northfield TC, Mendall MA. 2002. Review article: faecal markers in the assessment of activity in inflammatory bowel disease. Aliment. Pharmacol. Ther. 16:675-681. (Pubitemid 34407514)
-
(2002)
Alimentary Pharmacology and Therapeutics
, vol.16
, Issue.4
, pp. 675-681
-
-
Poullis, A.1
Foster, R.2
Northfield, T.C.3
Mendall, M.A.4
-
17
-
-
0028832576
-
Physiological state of Escherichia coli BJ4 growing in the large intestines of streptomycin- treated mice
-
Poulsen LK, Licht TR, Rang C, Krogfelt KA, Molin S. 1995. Physiological state of Escherichia coli BJ4 growing in the large intestines of streptomycin- treated mice. J. Bacteriol. 177:5840-5845.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 5840-5845
-
-
Poulsen, L.K.1
Licht, T.R.2
Rang, C.3
Krogfelt, K.A.4
Molin, S.5
-
18
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J, et al. 2010. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464:59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
-
19
-
-
0027429494
-
Treatment of active Crohn's disease by exclusion diet: East Anglian multicentre controlled trial
-
DOI 10.1016/0140-6736(93)92121-9
-
Riordan AM, et al. 1993. Treatment of active Crohn's disease by exclusion diet: East Anglian multicentre controlled trial. Lancet 342:1131-1134. (Pubitemid 23324052)
-
(1993)
Lancet
, vol.342
, Issue.8880
, pp. 1131-1134
-
-
Riordan, A.M.1
Hunter, J.O.2
Cowan, R.E.3
Crampton, J.R.4
Davidson, A.R.5
Dickinson, R.J.6
Dronfield, M.W.7
Fellows, I.W.8
Hishon, S.9
Kerrigan, G.N.W.10
Kennedy, H.J.11
McGouran, R.C.M.12
Neale, G.13
Saunders, J.H.B.14
-
20
-
-
0030897788
-
Assessment of disease activity in ulcerative colitis by faecal calprotectin, a novel granulocyte marker protein
-
Roseth AG, Aadland E, Jahnsen J, Raknerud N. 1997. Assessment of disease activity in ulcerative colitis by faecal calprotectin, a novel granulocyte marker protein. Digestion 58:176-180. (Pubitemid 27163169)
-
(1997)
Digestion
, vol.58
, Issue.2
, pp. 176-180
-
-
Roseth, A.G.1
Aadland, E.2
Jahnsen, J.3
Raknerud, N.4
-
21
-
-
0026744132
-
Assessment of the neutrophil dominating protein calprotectin in feces. A methodologic study
-
Roseth AG, Fagerhol MK, Aadland E, Schjonsby H. 1992. Assessment of the neutrophil dominating protein calprotectin in feces. A methodologic study. Scand. J. Gastroenterol. 27:793-798.
-
(1992)
Scand. J. Gastroenterol.
, vol.27
, pp. 793-798
-
-
Roseth, A.G.1
Fagerhol, M.K.2
Aadland, E.3
Schjonsby, H.4
-
22
-
-
0032692721
-
The intestinal mucus layer from patients with inflammatory bowel disease harbors high numbers of bacteria compared with controls
-
DOI 10.1016/S0016-5085(99)70393-8
-
Schultsz C, Van Den Berg FM, Ten Kate FW, Tytgat GN, Dankert J. 1999. The intestinal mucus layer from patients with inflammatory bowel disease harbors high numbers of bacteria compared with controls. Gastroenterology 117:1089-1097. (Pubitemid 29512667)
-
(1999)
Gastroenterology
, vol.117
, Issue.5
, pp. 1089-1097
-
-
Schultsz, C.1
Van Den, B.F.M.2
Kate, F.W.T.3
Tytgat, G.N.J.4
Dankert, J.5
-
23
-
-
54049150524
-
Fecal calprotectin, lactoferrin, and endoscopic disease activity in monitoring anti-TNF-alpha therapy for Crohn's disease
-
Sipponen T, et al. 2008. Fecal calprotectin, lactoferrin, and endoscopic disease activity in monitoring anti-TNF-alpha therapy for Crohn's disease. Inflamm. Bowel Dis. 14:1392-1398.
-
(2008)
Inflamm. Bowel Dis.
, vol.14
, pp. 1392-1398
-
-
Sipponen, T.1
-
24
-
-
55949124035
-
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
-
Sokol H, et al. 2008. Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc. Natl. Acad. Sci. U. S. A. 105:16731-16736.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 16731-16736
-
-
Sokol, H.1
-
25
-
-
70349488325
-
Low counts of Faecalibacterium prausnitzii in colitis microbiota
-
Sokol H, et al. 2009. Low counts of Faecalibacterium prausnitzii in colitis microbiota. Inflamm. Bowel Dis. 15:1183-1189.
-
(2009)
Inflamm. Bowel Dis.
, vol.15
, pp. 1183-1189
-
-
Sokol, H.1
-
26
-
-
0035031148
-
Fusobacterium prausnitzii and related species represent a dominant group within the human fecal flora
-
Suau A, et al. 2001. Fusobacterium prausnitzii and related species represent a dominant group within the human fecal flora. Syst. Appl. Microbiol. 24:139-145. (Pubitemid 32433703)
-
(2001)
Systematic and Applied Microbiology
, vol.24
, Issue.1
, pp. 139-145
-
-
Suau, A.1
Rochet, V.2
Sghir, A.3
Gramet, G.4
Brewaeys, S.5
Sutren, M.6
Rigottier-Gois, L.7
Dore, J.8
-
27
-
-
0036140777
-
Mucosal flora in inflammatory bowel disease
-
Swidsinski A, et al. 2002. Mucosal flora in inflammatory bowel disease. Gastroenterology 122:44-54. (Pubitemid 34049193)
-
(2002)
Gastroenterology
, vol.122
, Issue.1
, pp. 44-54
-
-
Swidsinski, A.1
Ladhoff, A.2
Pernthaler, A.3
Swidsinski, S.4
LoeningBaucke, V.5
Ortner, M.6
Weber, J.7
Hoffmann, U.8
Schreiber, S.9
Dietel, M.10
Lochs, H.11
-
29
-
-
0038724272
-
Subclinical intestinal inflammation: An inherited abnormality in Crohn's disease relatives?
-
DOI 10.1016/S0016-5085(03)00383-4
-
Thjodleifsson B, et al. 2003. Subclinical intestinal inflammation: an inherited abnormality in Crohn's disease relatives? Gastroenterology 124:1728-1737. (Pubitemid 36666769)
-
(2003)
Gastroenterology
, vol.124
, Issue.7
, pp. 1728-1737
-
-
Thjodleifsson, B.1
Sigthorsson, G.2
Cariglia, N.3
Reynisdottir, I.4
Gudbjartsson, D.F.5
Kristjansson, K.6
Meddings, J.B.7
Gudnason, V.8
Wandall, J.H.9
Andersen, L.P.10
Sherwood, R.11
Kjeld, M.12
Oddsson, E.13
Gudjonsson, H.14
Bjarnason, I.15
-
30
-
-
26444504934
-
Bacterial population analysis of human colon and terminal ileum biopsies with 16S rRNA-based fluorescent probes: Commensal bacteria live in suspension and have no direct contact with epithelial cells
-
van der Waaij, LA, et al. 2005. Bacterial population analysis of human colon and terminal ileum biopsies with 16S rRNA-based fluorescent probes: commensal bacteria live in suspension and have no direct contact with epithelial cells. Inflamm. Bowel Dis. 11:865-871.
-
(2005)
Inflamm. Bowel Dis.
, vol.11
, pp. 865-871
-
-
Van Der Waaij, L.A.1
-
31
-
-
3142621080
-
Immunoglobulin coating of faecal bacteria in inflammatory bowel disease
-
van der Waaij, LA, et al. 2004. Immunoglobulin coating of faecal bacteria in inflammatory bowel disease. Eur. J. Gastroenterol. Hepatol. 16:669-674.
-
(2004)
Eur. J. Gastroenterol. Hepatol.
, vol.16
, pp. 669-674
-
-
Van Der Waaij, L.A.1
-
32
-
-
25844517077
-
Fluorescent in situ hybridization with specific DNA probes offers adequate detection of Enterococcus faecalis and Enterococcus faecium in clinical samples
-
DOI 10.1099/jmm.0.46022-0
-
Waar K, Degener JE, van Luyn MJ, Harmsen HJ. 2005. Fluorescent in situ hybridization with specific DNA probes offers adequate detection of Enterococcus faecalis and Enterococcus faecium in clinical samples. J. Med. Microbiol. 54:937-944. (Pubitemid 41395850)
-
(2005)
Journal of Medical Microbiology
, vol.54
, Issue.10
, pp. 937-944
-
-
Waar, K.1
Degener, J.E.2
Van Luyn, M.J.3
Harmsen, H.J.M.4
-
33
-
-
78650973052
-
High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease
-
Walker A, et al. 2011. High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease. BMC Microbiol. 11:7.
-
(2011)
BMC Microbiol
, vol.11
, pp. 7
-
-
Walker, A.1
-
34
-
-
41149135384
-
Associations with tight junction genes PARD3 and MAGI2 in Dutch patients point to a common barrier defect for coeliac disease and ulcerative colitis
-
DOI 10.1136/gut.2007.133132
-
Wapenaar MC, et al. 2008. Associations with tight junction genes PARD3 and MAGI2 in Dutch patients point to a common barrier defect for coeliac disease and ulcerative colitis: an unusual case of ascites. Gut 57:463-467. (Pubitemid 351442527)
-
(2008)
Gut
, vol.57
, Issue.4
, pp. 463-467
-
-
Wapenaar, M.C.1
Monsuur, A.J.2
Van Bodegraven, A.A.3
Weersma, R.K.4
Bevova, M.R.5
Linskens, R.K.6
Howdle, P.7
Holmes, G.8
Mulder, C.J.9
Dijkstra, G.10
Van Heel, D.A.11
Wijmenga, C.12
-
35
-
-
66249129571
-
Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease
-
Willing B, et al. 2009. Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease. In- flamm. Bowel Dis. 15:653-660.
-
(2009)
In- flamm. Bowel Dis.
, vol.15
, pp. 653-660
-
-
Willing, B.1
-
36
-
-
34547176642
-
Unravelling the pathogenesis of inflammatory bowel disease
-
DOI 10.1038/nature06005, PII NATURE06005
-
Xavier RJ, Podolsky DK. 2007. Unravelling the pathogenesis of inflammatory bowel disease. Nature 448:427-434. (Pubitemid 47123518)
-
(2007)
Nature
, vol.448
, Issue.7152
, pp. 427-434
-
-
Xavier, R.J.1
Podolsky, D.K.2
|