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Volumn 152, Issue SUPPL. 2, 2012, Pages 521-537

Parameter-expanded data augmentation for Bayesian analysis of capture-recapture models

Author keywords

Hierarchical models; Individual covariates; Individual heterogeneity; Markov chain Monte Carlo; Occupancy models

Indexed keywords

ALGORITHM; CAPTURE METHOD; HIERARCHICAL SYSTEM; MARKOV CHAIN; MONTE CARLO ANALYSIS; POPULATION DYNAMICS; SPATIAL ANALYSIS;

EID: 84859270460     PISSN: 21937192     EISSN: 21937206     Source Type: Journal    
DOI: 10.1007/s10336-010-0619-4     Document Type: Review
Times cited : (140)

References (59)
  • 1
    • 85164903690 scopus 로고    scopus 로고
    • Hierarchical modeling of an invasive spread: Case of the Eurasian collared-dove Streptopelia decaocto in the USA
    • (in press)
    • Bled F, Royle JA, Cam E (2010) Hierarchical modeling of an invasive spread: case of the Eurasian collared-dove Streptopelia decaocto in the USA. Ecol Appl (in press).
    • (2010) Ecol Appl
    • Bled, F.1    Royle, J.A.2    Cam, E.3
  • 2
    • 33645077857 scopus 로고    scopus 로고
    • An extension of the Cormack Jolly Seber model for continuous covariates with application to Microtus pennsylvanicus
    • Bonner S, Schwarz C (2006) An extension of the Cormack Jolly Seber model for continuous covariates with application to Microtus pennsylvanicus. Biometrics 62: 142-149.
    • (2006) Biometrics , vol.62 , pp. 142-149
    • Bonner, S.1    Schwarz, C.2
  • 3
    • 43749091718 scopus 로고    scopus 로고
    • Spatially explicit maximum likelihood methods for capture-recapture studies
    • Borchers DL, Efford MG (2008) Spatially explicit maximum likelihood methods for capture-recapture studies. Biometrics 64: 377-385.
    • (2008) Biometrics , vol.64 , pp. 377-385
    • Borchers, D.L.1    Efford, M.G.2
  • 4
    • 0018069938 scopus 로고
    • Estimation of the size of a closed population when capture probabilities vary among animals
    • Burnham KP, Overton WS (1978) Estimation of the size of a closed population when capture probabilities vary among animals. Biometrika 65: 625-633.
    • (1978) Biometrika , vol.65 , pp. 625-633
    • Burnham, K.P.1    Overton, W.S.2
  • 5
    • 85164887246 scopus 로고    scopus 로고
    • Dealing with incomplete and variable detectability in multi-year, multi-site monitoring of ecological populations
    • (in press)
    • Converse SJ, Royle JA (2010) Dealing with incomplete and variable detectability in multi-year, multi-site monitoring of ecological populations. In: Design and analysis of long-term ecological monitoring studies (in press).
    • (2010) Design and analysis of long-term ecological monitoring studies
    • Converse, S.J.1    Royle, J.A.2
  • 7
    • 0032946165 scopus 로고    scopus 로고
    • The use of mixed logit models to reflect heterogeneity in capture-recapture studies
    • Coull BA, Agresti A (1999) The use of mixed logit models to reflect heterogeneity in capture-recapture studies. Biometrics 55: 294-301.
    • (1999) Biometrics , vol.55 , pp. 294-301
    • Coull, B.A.1    Agresti, A.2
  • 8
    • 0022193474 scopus 로고
    • Parsimonious modelling of capture-mark-recapture studies
    • Crosbie SF, Manly BFJ (1985) Parsimonious modelling of capture-mark-recapture studies. Biometrics 41: 385-398.
    • (1985) Biometrics , vol.41 , pp. 385-398
    • Crosbie, S.F.1    Manly, B.F.J.2
  • 9
    • 0037531765 scopus 로고    scopus 로고
    • Mixture models for estimating the size of a closed population when capture rates vary among individuals
    • Dorazio RM, Royle JA (2003) Mixture models for estimating the size of a closed population when capture rates vary among individuals. Biometrics 59: 350-363.
    • (2003) Biometrics , vol.59 , pp. 350-363
    • Dorazio, R.M.1    Royle, J.A.2
  • 10
    • 18444403930 scopus 로고    scopus 로고
    • Estimating size and composition of biological communities by modeling the occurrence of species
    • Dorazio RM, Royle JA (2005) Estimating size and composition of biological communities by modeling the occurrence of species. J Am Stat Assoc 100: 389-398.
    • (2005) J Am Stat Assoc , vol.100 , pp. 389-398
    • Dorazio, R.M.1    Royle, J.A.2
  • 11
    • 33646128222 scopus 로고    scopus 로고
    • Estimating species richness and accumulation by modeling species occurrence and detectability
    • Dorazio RM, Royle JA, Soderstrom B, Glimskar A (2006) Estimating species richness and accumulation by modeling species occurrence and detectability. Ecology 87: 842-854.
    • (2006) Ecology , vol.87 , pp. 842-854
    • Dorazio, R.M.1    Royle, J.A.2    Soderstrom, B.3    Glimskar, A.4
  • 12
    • 77955459355 scopus 로고    scopus 로고
    • Models for inference in dynamic metacommunity systems
    • Dorazio RM, Kéry M, Royle JA, Plattner M (2010) Models for inference in dynamic metacommunity systems. Ecology 91: 2466-2475.
    • (2010) Ecology , vol.91 , pp. 2466-2475
    • Dorazio, R.M.1    Kéry, M.2    Royle, J.A.3    Plattner, M.4
  • 13
    • 36749072150 scopus 로고    scopus 로고
    • A Bayesian approach to the multistate Jolly-Seber capture-recapture model
    • Dupuis JA, Schwarz CJ (2007) A Bayesian approach to the multistate Jolly-Seber capture-recapture model. Biometrics 63: 1015-1022.
    • (2007) Biometrics , vol.63 , pp. 1015-1022
    • Dupuis, J.A.1    Schwarz, C.J.2
  • 14
    • 25444452152 scopus 로고    scopus 로고
    • Mark-recapture with occasion and individual effects: abundance estimation through Bayesian model selection in a fixed dimensional parameter space
    • Durban JW, Elston DA (2005) Mark-recapture with occasion and individual effects: abundance estimation through Bayesian model selection in a fixed dimensional parameter space. J Agric Biol Environ Stat 10: 291-305.
    • (2005) J Agric Biol Environ Stat , vol.10 , pp. 291-305
    • Durban, J.W.1    Elston, D.A.2
  • 15
    • 4043132520 scopus 로고    scopus 로고
    • Density estimation in live-trapping studies
    • Efford M (2004) Density estimation in live-trapping studies. Oikos 106: 598-610.
    • (2004) Oikos , vol.106 , pp. 598-610
    • Efford, M.1
  • 17
    • 78249273661 scopus 로고    scopus 로고
    • Spatially-explicit inference for open populations: estimating demographic parameters from camera-trap studies
    • Gardner B, Reppucci J, Lucherini M, Royle JA (2010b) Spatially-explicit inference for open populations: estimating demographic parameters from camera-trap studies. Ecology 91: 3376-3383.
    • (2010) Ecology , vol.91 , pp. 3376-3383
    • Gardner, B.1    Reppucci, J.2    Lucherini, M.3    Royle, J.A.4
  • 19
    • 77951190231 scopus 로고    scopus 로고
    • Individual heterogeneity in studies on marked animals using numerical integration: capture-recapture mixed models
    • Gimenez O, Choquet R (2010) Individual heterogeneity in studies on marked animals using numerical integration: capture-recapture mixed models. Ecology 91: 148-154.
    • (2010) Ecology , vol.91 , pp. 148-154
    • Gimenez, O.1    Choquet, R.2
  • 20
    • 77956889087 scopus 로고
    • Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
    • Green PJ (1995) Reversible jump Markov chain Monte Carlo computation and Bayesian model determination. Biometrika 82: 711-732.
    • (1995) Biometrika , vol.82 , pp. 711-732
    • Green, P.J.1
  • 21
    • 0032808670 scopus 로고    scopus 로고
    • The insignificance of statistical significance testing
    • Johnson DH (1999) The insignificance of statistical significance testing. J Wildl Manag 63: 763-772.
    • (1999) J Wildl Manag , vol.63 , pp. 763-772
    • Johnson, D.H.1
  • 22
    • 76549200437 scopus 로고
    • Explicit estimates from capture-recapture data with both death and immigration-stochastic model
    • Jolly G (1965) Explicit estimates from capture-recapture data with both death and immigration-stochastic model. Biometrika 52: 225-247.
    • (1965) Biometrika , vol.52 , pp. 225-247
    • Jolly, G.1
  • 23
    • 0028977073 scopus 로고
    • Estimating tiger (Panthera tigris) populations from camera-trap data using capture-recapture models
    • Karanth KU (1995) Estimating tiger (Panthera tigris) populations from camera-trap data using capture-recapture models. Biol Conserv 71: 333-338.
    • (1995) Biol Conserv , vol.71 , pp. 333-338
    • Karanth, K.U.1
  • 24
    • 0032406368 scopus 로고    scopus 로고
    • Estimation of tiger densities in India using photographic captures and recaptures
    • Karanth KU, Nichols JD (1998) Estimation of tiger densities in India using photographic captures and recaptures. Ecology 79: 2852-2862.
    • (1998) Ecology , vol.79 , pp. 2852-2862
    • Karanth, K.U.1    Nichols, J.D.2
  • 25
    • 33845389490 scopus 로고    scopus 로고
    • Assessing tiger population dynamics using photographic capture-recapture sampling
    • Karanth K, Nichols JD, Kumar N, Hines JE (2006) Assessing tiger population dynamics using photographic capture-recapture sampling. Ecology 87: 2925-2937.
    • (2006) Ecology , vol.87 , pp. 2925-2937
    • Karanth, K.1    Nichols, J.D.2    Kumar, N.3    Hines, J.E.4
  • 26
    • 67649963429 scopus 로고    scopus 로고
    • Inference about species richness and community structure using species-specific occupancy models in the National Swiss Breeding Bird Survey MHB
    • D. L. Thomson, E. G. Cooch, and M. J. Conroy (Eds.), New York: Springer
    • Kéry M, Royle JA (2009) Inference about species richness and community structure using species-specific occupancy models in the National Swiss Breeding Bird Survey MHB. In: Thomson DL, Cooch EG, Conroy MJ (eds) Modeling demographic processes in marked populations. Springer, New York, pp 639-656.
    • (2009) Modeling Demographic Processes in Marked Populations. , pp. 639-656
    • Kéry, M.1    Royle, J.A.2
  • 27
    • 66149143167 scopus 로고    scopus 로고
    • Species richness and occupancy estimation in communities subject to temporary emigration
    • Kéry M, Royle JA, Plattner M, Dorazio RM (2009) Species richness and occupancy estimation in communities subject to temporary emigration. Ecology 90: 1279-1290.
    • (2009) Ecology , vol.90 , pp. 1279-1290
    • Kéry, M.1    Royle, J.A.2    Plattner, M.3    Dorazio, R.M.4
  • 28
    • 0001188708 scopus 로고    scopus 로고
    • On the Bayesian analysis of population size
    • King R, Brooks SP (2001) On the Bayesian analysis of population size. Biometrika 88: 317-336.
    • (2001) Biometrika , vol.88 , pp. 317-336
    • King, R.1    Brooks, S.P.2
  • 29
    • 49749129588 scopus 로고    scopus 로고
    • On the Bayesian estimation of a closed population size in the presence of heterogeneity and model uncertainty
    • King R, Brooks SP (2008) On the Bayesian estimation of a closed population size in the presence of heterogeneity and model uncertainty. Biometrics 64: 816-824.
    • (2008) Biometrics , vol.64 , pp. 816-824
    • King, R.1    Brooks, S.P.2
  • 30
    • 56049114896 scopus 로고    scopus 로고
    • Analysing complex capture-recapture data in the presence of individual and temporal covariates and model uncertainty
    • King R, Brooks SP, Coulson T (2008) Analysing complex capture-recapture data in the presence of individual and temporal covariates and model uncertainty. Biometrics 64: 1187-1195.
    • (2008) Biometrics , vol.64 , pp. 1187-1195
    • King, R.1    Brooks, S.P.2    Coulson, T.3
  • 31
    • 85164885826 scopus 로고    scopus 로고
    • A new aerial survey design to monitor manatee abundance for Everglades restoration
    • (in press)
    • Langtimm CA, Dorazio RM, Stith BM, Doyle TJ (2010) A new aerial survey design to monitor manatee abundance for Everglades restoration. J Wildl Manag (in press).
    • (2010) J Wildl Manag
    • Langtimm, C.A.1    Dorazio, R.M.2    Stith, B.M.3    Doyle, T.J.4
  • 32
    • 0026490966 scopus 로고
    • Modeling survival and testing biological hypotheses using marked animals: a unified approach with case studies
    • Lebreton JD, Burnham K, Clobert J, Anderson DR (1992) Modeling survival and testing biological hypotheses using marked animals: a unified approach with case studies. Ecol Monogr 62: 67-118.
    • (1992) Ecol Monogr , vol.62 , pp. 67-118
    • Lebreton, J.D.1    Burnham, K.2    Clobert, J.3    Anderson, D.R.4
  • 33
    • 0346102884 scopus 로고    scopus 로고
    • Nonidentifiability of population size from capture-recapture data with heterogeneous detection probabilities
    • Link WA (2003) Nonidentifiability of population size from capture-recapture data with heterogeneous detection probabilities. Biometrics 59: 1123-1130.
    • (2003) Biometrics , vol.59 , pp. 1123-1130
    • Link, W.A.1
  • 35
    • 0442309501 scopus 로고    scopus 로고
    • Parameter expansion for data augmentation
    • Liu JS, Wu YN (1999) Parameter expansion for data augmentation. J Am Stat Assoc 94: 1264-1274.
    • (1999) J Am Stat Assoc , vol.94 , pp. 1264-1274
    • Liu, J.S.1    Wu, Y.N.2
  • 36
    • 70449411807 scopus 로고    scopus 로고
    • The BUGS project: evolution, critique and future directions (with discussion)
    • Lunn D, Spiegelhalter D, Thomas A, Best N (2009) The BUGS project: evolution, critique and future directions (with discussion). Stat Med 28: 3049-3082.
    • (2009) Stat Med , vol.28 , pp. 3049-3082
    • Lunn, D.1    Spiegelhalter, D.2    Thomas, A.3    Best, N.4
  • 38
    • 0344585053 scopus 로고    scopus 로고
    • Estimating site occupancy, colonization, and local extinction when a species is detected imperfectly
    • MacKenzie DI, Nichols JD, Hines JE, Knutson MG, Franklin AB (2003) Estimating site occupancy, colonization, and local extinction when a species is detected imperfectly. Ecology 84: 2200-2207.
    • (2003) Ecology , vol.84 , pp. 2200-2207
    • Mackenzie, D.I.1    Nichols, J.D.2    Hines, J.E.3    Knutson, M.G.4    Franklin, A.B.5
  • 40
    • 77954196403 scopus 로고    scopus 로고
    • PyMC 2. 0: Bayesian stochastic modelling in python
    • (in press)
    • Patil A, Huard D, Fonnesbeck CJ (2010) PyMC 2. 0: Bayesian stochastic modelling in python. J Stat Softw (in press).
    • (2010) J Stat Softw
    • Patil, A.1    Huard, D.2    Fonnesbeck, C.J.3
  • 41
    • 27744546446 scopus 로고    scopus 로고
    • The performance of mixture models in heterogeneous closed population capture-recapture
    • Pledger S (2005) The performance of mixture models in heterogeneous closed population capture-recapture. Biometrics 61: 868-873.
    • (2005) Biometrics , vol.61 , pp. 868-873
    • Pledger, S.1
  • 42
    • 0347994088 scopus 로고    scopus 로고
    • Open capture-recapture models with heterogeneity: I. Cormack-Jolly-Seber model
    • Pledger S, Pollock KH, Norris JL (2003) Open capture-recapture models with heterogeneity: I. Cormack-Jolly-Seber model. Biometrics 59: 786-794.
    • (2003) Biometrics , vol.59 , pp. 786-794
    • Pledger, S.1    Pollock, K.H.2    Norris, J.L.3
  • 43
    • 0001281173 scopus 로고
    • A capture-recapture design robust to unequal probability of capture
    • Pollock K (1982) A capture-recapture design robust to unequal probability of capture. J Wildl Manag 46: 757-760.
    • (1982) J Wildl Manag , vol.46 , pp. 757-760
    • Pollock, K.1
  • 44
    • 33645046882 scopus 로고    scopus 로고
    • Site occupancy models with heterogeneous detection probabilities
    • Royle JA (2006) Site occupancy models with heterogeneous detection probabilities. Biometrics 62: 97-102.
    • (2006) Biometrics , vol.62 , pp. 97-102
    • Royle, J.A.1
  • 45
    • 43749112747 scopus 로고    scopus 로고
    • Modeling individual effects in the Cormack-Jolly-Seber model: a state-space formulation
    • Royle JA (2008) Modeling individual effects in the Cormack-Jolly-Seber model: a state-space formulation. Biometrics 64: 364-370.
    • (2008) Biometrics , vol.64 , pp. 364-370
    • Royle, J.A.1
  • 46
    • 62949101184 scopus 로고    scopus 로고
    • Analysis of capture-recapture models with individual covariates using data augmentation
    • Royle JA (2009) Analysis of capture-recapture models with individual covariates using data augmentation. Biometrics 65: 267-274.
    • (2009) Biometrics , vol.65 , pp. 267-274
    • Royle, J.A.1
  • 47
    • 34248583853 scopus 로고    scopus 로고
    • A Bayesian state-space formulation of dynamic occupancy models
    • Royle JA, Kéry M (2007) A Bayesian state-space formulation of dynamic occupancy models. Ecology 88: 1813-1823.
    • (2007) Ecology , vol.88 , pp. 1813-1823
    • Royle, J.A.1    Kéry, M.2
  • 48
    • 34147204415 scopus 로고    scopus 로고
    • Analysis of multinomial models with unknown index using data augmentation
    • Royle JA, Dorazio RM, Link WA (2007) Analysis of multinomial models with unknown index using data augmentation. J Comput Graph Stat 16: 67-85.
    • (2007) J Comput Graph Stat , vol.16 , pp. 67-85
    • Royle, J.A.1    Dorazio, R.M.2    Link, W.A.3
  • 50
    • 76349098099 scopus 로고    scopus 로고
    • Hierarchical spatial capture-recapture models for estimating density from trapping arrays
    • In: O'Connell AF, Nichols JD, Karanth KU (eds) Springer, Berlin
    • Royle JA, Gardner B (2010) Hierarchical spatial capture-recapture models for estimating density from trapping arrays. In: O'Connell AF, Nichols JD, Karanth KU (eds) Camera traps in animal ecology: methods and analyses. Springer, Berlin.
    • (2010) Camera traps in animal ecology: Methods and analyses
    • Royle, J.A.1    Gardner, B.2
  • 51
    • 54549109981 scopus 로고    scopus 로고
    • A hierarchical model for spatial capture-recapture data
    • Royle JA, Young KV (2008) A hierarchical model for spatial capture-recapture data. Ecology 89: 2281-2289.
    • (2008) Ecology , vol.89 , pp. 2281-2289
    • Royle, J.A.1    Young, K.V.2
  • 52
    • 72449210568 scopus 로고    scopus 로고
    • Bayesian inference in camera trap studies using a class of spatial capture-recapture models
    • Royle JA, Karanth KU, Gopalaswamy AM, Kumar NS (2009) Bayesian inference in camera trap studies using a class of spatial capture-recapture models. Ecology 90: 3233-3244.
    • (2009) Ecology , vol.90 , pp. 3233-3244
    • Royle, J.A.1    Karanth, K.U.2    Gopalaswamy, A.M.3    Kumar, N.S.4
  • 53
    • 0029659257 scopus 로고    scopus 로고
    • A general methodology for the analysis of capture-recapture experiments in open populations
    • Schwarz C, Arnason A (1996) A general methodology for the analysis of capture-recapture experiments in open populations. Biometrics 52: 860-873.
    • (1996) Biometrics , vol.52 , pp. 860-873
    • Schwarz, C.1    Arnason, A.2
  • 55
    • 76549219043 scopus 로고
    • A note on the multiple-recapture census
    • Seber G (1965) A note on the multiple-recapture census. Biometrika 52: 249-59.
    • (1965) Biometrika , vol.52 , pp. 249-259
    • Seber, G.1
  • 57
    • 84950758368 scopus 로고
    • The calculation of posterior distributions by data augmentation
    • Tanner MA, Wong WH (1987) The calculation of posterior distributions by data augmentation. J Am Stat Assoc 82: 528-540.
    • (1987) J Am Stat Assoc , vol.82 , pp. 528-540
    • Tanner, M.A.1    Wong, W.H.2
  • 59
    • 70349237421 scopus 로고    scopus 로고
    • Incorporating genotype uncertainty into mark-recapture-type models for estimating abundance using DNA samples
    • Wright JA, Barker RJ, Schofield MR, Frantz AC, Byrom AE, Gleeson DM (2009) Incorporating genotype uncertainty into mark-recapture-type models for estimating abundance using DNA samples. Biometrics 65: 833-840.
    • (2009) Biometrics , vol.65 , pp. 833-840
    • Wright, J.A.1    Barker, R.J.2    Schofield, M.R.3    Frantz, A.C.4    Byrom, A.E.5    Gleeson, D.M.6


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