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Volumn 28, Issue 7, 2012, Pages 1026-1027

SBAL: A practical tool to generate and edit structure-based amino acid sequence alignments

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; BIOLOGY; COMPUTER INTERFACE; COMPUTER PROGRAM; METHODOLOGY; PROTEIN SECONDARY STRUCTURE; SEQUENCE ALIGNMENT;

EID: 84859233511     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts035     Document Type: Article
Times cited : (22)

References (18)
  • 1
    • 79956190847 scopus 로고    scopus 로고
    • SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation
    • Anderson, C.L. et al. (2011) SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation. BMC Bioinformatics, 12, 184.
    • (2011) BMC Bioinformatics , vol.12 , pp. 184
    • Anderson, C.L.1
  • 2
    • 23144444979 scopus 로고    scopus 로고
    • Protein structure prediction servers at University College London
    • Bryson, K. et al. (2005) Protein structure prediction servers at University College London. Nucleic Acids Res., 33, W36-W38.
    • (2005) Nucleic Acids Res , vol.33
    • Bryson, K.1
  • 3
    • 0038386050 scopus 로고    scopus 로고
    • 3D-Jury: a simple approach to improve protein structure predictions
    • Ginalski, K. et al. (2003) 3D-Jury: a simple approach to improve protein structure predictions. Bioinformatics, 22, 1015-1018.
    • (2003) Bioinformatics , vol.22 , pp. 1015-1018
    • Ginalski, K.1
  • 4
    • 34547840166 scopus 로고    scopus 로고
    • SQUINT: a multiple alignment program and editor
    • Goode, M.G. and Rodrigo, A.G. (2007) SQUINT: a multiple alignment program and editor. Bioinformatics, 23, 1553-1555.
    • (2007) Bioinformatics , vol.23 , pp. 1553-1555
    • Goode, M.G.1    Rodrigo, A.G.2
  • 5
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy, M., et al. (2010) SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol. Biol. Evol., 27, 221-224.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 221-224
    • Gouy, M.1
  • 6
    • 0036173404 scopus 로고    scopus 로고
    • PCSB - a program collection for structural biology and biophysical chemistry
    • Hofmann, A. and Wlodawer, A. (2002) PCSB - a program collection for structural biology and biophysical chemistry. Bioinformatics, 18, 209-210.
    • (2002) Bioinformatics , vol.18 , pp. 209-210
    • Hofmann, A.1    Wlodawer, A.2
  • 7
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch, W. and Sander, C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 8
    • 0036773353 scopus 로고    scopus 로고
    • CINEMA-MX: a modular multiple alignment editor
    • Lord, P.W. et al. (2002) CINEMA-MX: a modular multiple alignment editor. Bioinformatics, 18, 1402-1403.
    • (2002) Bioinformatics , vol.18 , pp. 1402-1403
    • Lord, P.W.1
  • 9
    • 51349103584 scopus 로고    scopus 로고
    • Multiple sequence alignment based on profile alignment of intermediate sequences
    • Lu, Y. and Sze, S. (2008) Multiple sequence alignment based on profile alignment of intermediate sequences. J. Comput. Biol., 15, 767-777.
    • (2008) J. Comput. Biol. , vol.15 , pp. 767-777
    • Lu, Y.1    Sze, S.2
  • 10
    • 0036208872 scopus 로고    scopus 로고
    • Recent progress in multiple sequence alignment: a survey
    • Notredame, C. (2002) Recent progress in multiple sequence alignment: a survey. Pharmacogenomics, 3, 131-144.
    • (2002) Pharmacogenomics , vol.3 , pp. 131-144
    • Notredame, C.1
  • 11
    • 34248532415 scopus 로고    scopus 로고
    • PROMALS: towards accurate multiple sequence alignments of distantly related proteins
    • Pei, J. and Grishin, N.V. (2007) PROMALS: towards accurate multiple sequence alignments of distantly related proteins. Bioinformatics, 23, 802-808.
    • (2007) Bioinformatics , vol.23 , pp. 802-808
    • Pei, J.1    Grishin, N.V.2
  • 12
    • 42449090264 scopus 로고    scopus 로고
    • PROMALS3D: a tool for multiple sequence and structure alignment
    • Pei, J. et al. (2008) PROMALS3D: a tool for multiple sequence and structure alignment. Nucleic Acids Res., 36, 2295-2300.
    • (2008) Nucleic Acids Res , vol.36 , pp. 2295-2300
    • Pei, J.1
  • 13
    • 23144440940 scopus 로고    scopus 로고
    • PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information
    • Simossis, V.A. and Heringa, J. (2005) PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information. Nucleic Acids Res., 33, W289-W294.
    • (2005) Nucleic Acids Res , vol.33
    • Simossis, V.A.1    Heringa, J.2
  • 14
    • 23144452044 scopus 로고    scopus 로고
    • The HHpred interactive server for protein homology detection and structure prediction
    • Söding, J. et al. (2005) The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res., 33, W244-W248.
    • (2005) Nucleic Acids Res , vol.33
    • Söding, J.1
  • 15
    • 0033168097 scopus 로고    scopus 로고
    • A comprehensive comparison of multiple sequence alignment programs
    • Thompson, J.D. et al. (1999) A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res., 27, 2682-2690.
    • (1999) Nucleic Acids Res , vol.27 , pp. 2682-2690
    • Thompson, J.D.1
  • 16
    • 65449188232 scopus 로고    scopus 로고
    • Jalview Version 2-a multiple sequence alignment editor and analysis workbench
    • Waterhouse, A.M. et al. (2009) Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics, 25, 1189-1191.
    • (2009) Bioinformatics , vol.25 , pp. 1189-1191
    • Waterhouse, A.M.1
  • 17
    • 34547840223 scopus 로고    scopus 로고
    • Multiple alignment by aligning alignments
    • Wheeler, T.J. and Kececioglu, J.D. (2007) Multiple alignment by aligning alignments. Bioinformatics, 23, i559-i568.
    • (2007) Bioinformatics , vol.23
    • Wheeler, T.J.1    Kececioglu, J.D.2
  • 18
    • 24644512819 scopus 로고    scopus 로고
    • SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures
    • Zhou, H. and Zhou, Y. (2005) SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures. Bioinformatics, 21, 3615-3621.
    • (2005) Bioinformatics , vol.21 , pp. 3615-3621
    • Zhou, H.1    Zhou, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.