메뉴 건너뛰기




Volumn 28, Issue 7, 2012, Pages 991-1000

Automatic recognition of conceptualization zones in scientific articles and two life science applications

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; ARTIFICIAL INTELLIGENCE; AUTOMATED PATTERN RECOGNITION; CLASSIFICATION; COMPUTER PROGRAM; INTERNET; METHODOLOGY; PUBLICATION; SUPPORT VECTOR MACHINE;

EID: 84859229402     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts071     Document Type: Article
Times cited : (157)

References (46)
  • 1
    • 77953917404 scopus 로고    scopus 로고
    • Event extraction for systems biology by text mining the literature
    • Ananiadou, S. et al. (2010) Event extraction for systems biology by text mining the literature. Trends Biotechnol., 28, 381-390.
    • (2010) Trends Biotechnol , vol.28 , pp. 381-390
    • Ananiadou, S.1
  • 2
    • 71749114162 scopus 로고    scopus 로고
    • From annotator agreement to noise models
    • Beigman Klebanov, B. and Beigman, E. (2009) From annotator agreement to noise models. Comput. Linguist., 35, 495-503.
    • (2009) Comput. Linguist. , vol.35 , pp. 495-503
    • Beigman Klebanov, B.1    Beigman, E.2
  • 3
    • 0029370635 scopus 로고
    • Automatic condensation of electronic publications by sentence selection
    • Brandow, R. et al. (1995) Automatic condensation of electronic publications by sentence selection. Inform. Process. Manag., 31, 675-685.
    • (1995) Inform. Process. Manag. , vol.31 , pp. 675-685
    • Brandow, R.1
  • 4
    • 79955702502 scopus 로고    scopus 로고
    • LIBSVM: a library for support vector machines
    • Chang, C.-C. and Lin, C.-J. (2011) LIBSVM: a library for support vector machines. ACM Trans. Intell. Syst. Technol., 2, 27:1-27:27.
    • (2011) ACM Trans. Intell. Syst. Technol. , vol.2 , Issue.27 , pp. 1-27
    • Chang, C.-C.1    Lin, C.-J.2
  • 5
    • 52949095016 scopus 로고    scopus 로고
    • The swan biomedical discourse ontology
    • Ciccarese, P. et al. (2008) The swan biomedical discourse ontology. J. Biomed. Inform., 41, 739-751.
    • (2008) J. Biomed. Inform. , vol.41 , pp. 739-751
    • Ciccarese, P.1
  • 6
    • 17244380380 scopus 로고    scopus 로고
    • A survey of current work in biomedical text a survey of current work in biomedical text mining
    • Cohen, A.M. and Hersh, W.R. (2005) A survey of current work in biomedical text a survey of current work in biomedical text mining. Brief. Bioinform., 6, 57-71.
    • (2005) Brief. Bioinform. , vol.6 , pp. 57-71
    • Cohen, A.M.1    Hersh, W.R.2
  • 7
    • 84973587732 scopus 로고
    • A coefficient of agreement for nominal scales
    • Cohen, J. (1960) A coefficient of agreement for nominal scales. Educ. Psychol. Meas., 20, 37-46.
    • (1960) Educ. Psychol. Meas. , vol.20 , pp. 37-46
    • Cohen, J.1
  • 9
    • 85027501886 scopus 로고    scopus 로고
    • Identifying the epistemic value of discourse segments in biology texts
    • IWCS-8 '09, Association for Computational Linguistics, Stroudsburg, PA, USA
    • de Waard, A. et al. (2009) Identifying the epistemic value of discourse segments in biology texts. In Proceedings of the Eighth International Conference on Computational Semantics, IWCS-8 '09, Association for Computational Linguistics, Stroudsburg, PA, USA, pp. 351-354.
    • (2009) Proceedings of the Eighth International Conference on Computational Semantics , pp. 351-354
    • de Waard, A.1
  • 10
    • 72849113513 scopus 로고    scopus 로고
    • Apragmatic structure for research articles
    • ICPW '07, Association for Computing Machinery, New York, NY, USA
    • deWaard, A. (2007)Apragmatic structure for research articles. In Proceedings of the 2nd International Conference on PragmaticWeb, ICPW '07, Association for Computing Machinery, New York, NY, USA, pp. 83-89.
    • (2007) Proceedings of the 2nd International Conference on PragmaticWeb , pp. 83-89
    • deWaard, A.1
  • 11
    • 50949133669 scopus 로고    scopus 로고
    • LIBLINEAR: a library for large linear classification
    • Fan, R.-E. et al. (2008) LIBLINEAR: a library for large linear classification. J. Mach. Learn. Res., 9, 1871-1874.
    • (2008) J. Mach. Learn. Res. , vol.9 , pp. 1871-1874
    • Fan, R.-E.1
  • 12
    • 85111777321 scopus 로고    scopus 로고
    • Identifying the information structure of scientific abstracts: an investigation of three different schemes
    • Association for Computational Linguistics, Uppsala, Sweden
    • Guo, Y. et al. (2010) Identifying the information structure of scientific abstracts: an investigation of three different schemes. In Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, Association for Computational Linguistics, Uppsala, Sweden, pp. 99-107.
    • (2010) Proceedings of the 2010 Workshop on Biomedical Natural Language Processing , pp. 99-107
    • Guo, Y.1
  • 13
    • 79952338946 scopus 로고    scopus 로고
    • A comparison and user-based evaluation of models of textual information structure in the context of cancer risk assessment
    • doi:10.1186/1471-2105-12-69
    • Guo, Y. et al. (2011) A comparison and user-based evaluation of models of textual information structure in the context of cancer risk assessment. BMC Bioinform., 12:69, doi:10.1186/1471-2105-12-69.
    • (2011) BMC Bioinform. , vol.12 , Issue.69
    • Guo, Y.1
  • 14
    • 62949115142 scopus 로고    scopus 로고
    • Identifying sections in scientific abstracts using conditional random fields
    • Hirohata, K. et al. (2008) Identifying sections in scientific abstracts using conditional random fields. In Proceedings of the IJCNLP 2008.
    • (2008) Proceedings of the IJCNLP , pp. 2008
    • Hirohata, K.1
  • 15
    • 56649091414 scopus 로고    scopus 로고
    • Recognizing speculative language in biomedical research articles: a linguistically motivated perspective
    • Kilicoglu, H. and Bergler, S. (2008) Recognizing speculative language in biomedical research articles: a linguistically motivated perspective. BMC Bioinform., 9 (Suppl. 11), S10.
    • (2008) BMC Bioinform , vol.9 , Issue.SUPPL. 11
    • Kilicoglu, H.1    Bergler, S.2
  • 16
    • 84901593338 scopus 로고    scopus 로고
    • Overview of BioNLP shared task 2011
    • Association for Computational Linguistics, Portland, Oregon, USA
    • Kim, J.-D. et al. (2011) Overview of BioNLP shared task 2011. In Proceedings of BioNLP Shared Task 2011 Workshop, Association for Computational Linguistics, Portland, Oregon, USA, pp. 1-6.
    • (2011) Proceedings of BioNLP Shared Task 2011 Workshop , pp. 1-6
    • Kim, J.-D.1
  • 19
    • 84859226637 scopus 로고    scopus 로고
    • Guidelines for the annotation of general scientific concepts
    • JISC Project Report 88, Aberystwyth University
    • Liakata, M. and Soldatova, L. (2008) Guidelines for the annotation of general scientific concepts. Technical report, JISC Project Report 88, Aberystwyth University, http://ie-repository.jisc.ac.uk/88/.
    • (2008) Technical report
    • Liakata, M.1    Soldatova, L.2
  • 20
    • 84859235883 scopus 로고    scopus 로고
    • The ART Corpus
    • Aberystwyth University
    • Liakata, M. and Soldatova, L. (2009) The ART Corpus. Technical report, Aberystwyth University, http://hdl.handle.net/2160/1979.
    • (2009) Technical report
    • Liakata, M.1    Soldatova, L.2
  • 21
    • 85063155473 scopus 로고    scopus 로고
    • Semantic annotation of papers: interface & enrichment tool (SAPIENT)
    • Boulder, Colorado
    • Liakata, M. et al. (2009) Semantic annotation of papers: interface & enrichment tool (SAPIENT). In Proceedings of BioNLP-09, Boulder, Colorado, pp. 193-200.
    • (2009) Proceedings of BioNLP-09 , pp. 193-200
    • Liakata, M.1
  • 22
    • 85019581590 scopus 로고    scopus 로고
    • Corpora for the conceptualization and zoning of scientific papers
    • (LREC'10), European Language Resources Association, Valletta, Maltapp
    • Liakata, M. et al. (2010) Corpora for the conceptualization and zoning of scientific papers. In Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC'10), European Language Resources Association, Valletta, Maltapp, pp. 2054-2061.
    • (2010) Proceedings of the Seventh International Conference on Language Resources and Evaluation , pp. 2054-2061
    • Liakata, M.1
  • 23
    • 29244479649 scopus 로고    scopus 로고
    • (2004) The language of bioscience: facts, speculations, and statements in between
    • Hirschman, L. and Pustejovsky, J. (eds), Association for Computational Linguistics, Boston, Massachusetts, USA
    • Light, M. et al. (2004) The language of bioscience: facts, speculations, and statements in between. In Hirschman, L. and Pustejovsky, J. (eds), HLT-NAACL 2004 Workshop: BioLINK 2004, Linking Biological Literature, Ontologies and Databases, Association for Computational Linguistics, Boston, Massachusetts, USA, pp. 17-24.
    • (2004) HLT-NAACL 2004 Workshop: BioLINK Linking Biological Literature Ontologies and Databases , pp. 17-24
    • Light, M.1
  • 25
    • 16544374908 scopus 로고    scopus 로고
    • Categorization of sentence types in medical abstracts
    • McKnight, L. and Srinivasan, P. (2003) Categorization of sentence types in medical abstracts. AMIA Annu Symp Proc, pp. 440-444.
    • (2003) AMIA Annu Symp Proc , pp. 440-444
    • McKnight, L.1    Srinivasan, P.2
  • 26
    • 84893396397 scopus 로고    scopus 로고
    • Weakly supervised learning for hedge classification in scientific literature
    • Prague, Czech Republic
    • Medlock, B. and Briscoe, T. (2007) Weakly supervised learning for hedge classification in scientific literature. In 45th Annual Meeting of the ACL, Prague, Czech Republic, pp. 23-30.
    • (2007) 45th Annual Meeting of the ACL , pp. 23-30
    • Medlock, B.1    Briscoe, T.2
  • 27
    • 80054042581 scopus 로고    scopus 로고
    • Accurate argumentative zoning with maximum entropy models
    • NLPIR4DL '09, Association for Computational Linguistics, Morristown, NJ, USA
    • Merity, S. et al. (2009) Accurate argumentative zoning with maximum entropy models. In Proceedings of the 2009 Workshop on Text and Citation Analysis for Scholarly Digital Libraries, NLPIR4DL '09, Association for Computational Linguistics, Morristown, NJ, USA, pp. 19-26.
    • (2009) Proceedings of the 2009 Workshop on Text and Citation Analysis for Scholarly Digital Libraries , pp. 19-26
    • Merity, S.1
  • 28
    • 85023117841 scopus 로고    scopus 로고
    • Applied morphological processing of english
    • Minnen, G. et al. (2001) Applied morphological processing of english. Nat. Lang. Eng., 7, 207-223.
    • (2001) Nat. Lang. Eng. , vol.7 , pp. 207-223
    • Minnen, G.1
  • 29
    • 33646141828 scopus 로고    scopus 로고
    • Zone analysis in biology articles as a basis for information extraction
    • Mizuta, Y. et al. (2006) Zone analysis in biology articles as a basis for information extraction. Int. J. Med. Inform., 75, 468-487.
    • (2006) Int. J. Med. Inform. , vol.75 , pp. 468-487
    • Mizuta, Y.1
  • 30
    • 60749127748 scopus 로고    scopus 로고
    • A baseline feature set for learning rhetorical zones using full articles in the biomedical domain
    • Mullen, T. et al. (2005) A baseline feature set for learning rhetorical zones using full articles in the biomedical domain. SIGKDD Explor., 7, 52-58.
    • (2005) SIGKDD Explor , vol.7 , pp. 52-58
    • Mullen, T.1
  • 31
    • 84865518815 scopus 로고    scopus 로고
    • Meta-knowledge annotation of bio-events
    • Nawaz, R. et al. (2010) Meta-knowledge annotation of bio-events. In LREC, pp. 2498-2507.
    • (2010) LREC , pp. 2498-2507
    • Nawaz, R.1
  • 32
    • 84859225221 scopus 로고    scopus 로고
    • CRFsuite: a fast implementation of Conditional Random Fields (CRFs) (20 February 2012, date last accessed)
    • Okazaki, N. (2007) CRFsuite: a fast implementation of Conditional Random Fields (CRFs), http://www.chokkan.org/software/crfsuite/, (20 February 2012, date last accessed).
    • (2007)
    • Okazaki, N.1
  • 33
    • 70349454090 scopus 로고    scopus 로고
    • Porting a lexicalized-grammar parser to the biomedical domain
    • Rimell, L. and Clark, S. (2009) Porting a lexicalized-grammar parser to the biomedical domain. J. Biomed. Inform., 42, 852-865.
    • (2009) J. Biomed. Inform. , vol.42 , pp. 852-865
    • Rimell, L.1    Clark, S.2
  • 34
    • 33846894118 scopus 로고    scopus 로고
    • Using argumentation to extract key sentences from biomedical abstracts
    • Ruch, P. et al. (2007) Using argumentation to extract key sentences from biomedical abstracts. Int. J. Med. Inform., 76, 195-200.
    • (2007) Int. J. Med. Inform. , vol.76 , pp. 195-200
    • Ruch, P.1
  • 35
    • 51749123368 scopus 로고    scopus 로고
    • Multi-dimensional classification of biomedical text: toward automated, practical provision of high-utility text to diverse users
    • Shatkay, H. et al. (2008) Multi-dimensional classification of biomedical text: toward automated, practical provision of high-utility text to diverse users. J. Bioinform., 24:18, 2086-2093.
    • (2008) J. Bioinform. , vol.24 , Issue.18 , pp. 2086-2093
    • Shatkay, H.1
  • 37
    • 33747884698 scopus 로고    scopus 로고
    • An ontology of scientific experiments
    • Soldatova, L. and King, R. (2006) An ontology of scientific experiments. J. Roy. Soc. Interf., 3, 795-803.
    • (2006) J. Roy. Soc. Interf. , vol.3 , pp. 795-803
    • Soldatova, L.1    King, R.2
  • 38
    • 84859261885 scopus 로고    scopus 로고
    • An ontology methodology and cisp-the proposed core information about scientific papers
    • JISC Project Report 137, Aberystwyth University
    • Soldatova, L. and Liakata, M. (2007) An ontology methodology and cisp-the proposed core information about scientific papers. Technical Report. JISC Project Report 137, Aberystwyth University, http://ie-repository.jisc.ac.uk/137/.
    • (2007) Technical Report
    • Soldatova, L.1    Liakata, M.2
  • 39
    • 0040078056 scopus 로고    scopus 로고
    • Summarizing scientific articles: experiments with relevance and rhetorical status
    • Teufel, S. and Moens, M. (2002) Summarizing scientific articles: experiments with relevance and rhetorical status. Comput. Linguist., 28, 409-445.
    • (2002) Comput. Linguist. , vol.28 , pp. 409-445
    • Teufel, S.1    Moens, M.2
  • 40
    • 85027513805 scopus 로고    scopus 로고
    • An annotation scheme for discourse-level argumentation in research articles
    • Teufel, S. et al. (1999) An annotation scheme for discourse-level argumentation in research articles. In Proceedings of EACL, pp. 110-117.
    • (1999) Proceedings of EACL , pp. 110-117
    • Teufel, S.1
  • 41
    • 80053410932 scopus 로고    scopus 로고
    • Towards discipline-independent argumentative zoning: evidence from chemistry and computational linguistics
    • EMNLP '09, Association for Computational Linguistics, Stroudsburg, PA, USA
    • Teufel, S. et al. (2009) Towards discipline-independent argumentative zoning: evidence from chemistry and computational linguistics. In Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing: Volume 3 -Volume 3, EMNLP '09, Association for Computational Linguistics, Stroudsburg, PA, USA, pp. 1493-1502.
    • (2009) Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing: Volume 3 -Volume 3 , pp. 1493-1502
    • Teufel, S.1
  • 44
    • 80053578996 scopus 로고    scopus 로고
    • Enriching a biomedical event corpus with meta-knowledge annotation
    • Thompson, P. et al. (2011) Enriching a biomedical event corpus with meta-knowledge annotation. BMC Bioinform., 12, 393.
    • (2011) BMC Bioinform , vol.12 , pp. 393
    • Thompson, P.1
  • 45
    • 84859231419 scopus 로고    scopus 로고
    • Hypothesis and evidence extraction from full-text scientific journal articles
    • Association for Computational Linguistics, Portland, Oregon, USA
    • White, E. et al. (2011) Hypothesis and evidence extraction from full-text scientific journal articles. In Proceedings of BioNLP 2011 Workshop, Association for Computational Linguistics, Portland, Oregon, USA, pp. 134-135.
    • (2011) Proceedings of BioNLP 2011 Workshop , pp. 134-135
    • White, E.1
  • 46
    • 33748373597 scopus 로고    scopus 로고
    • New directions in biomedical text annotations: definitions, guidelines and corpus construction
    • Wilbur, W.J. et al. (2006) New directions in biomedical text annotations: definitions, guidelines and corpus construction. BMC Bioinform., 7, 356.
    • (2006) BMC Bioinform , vol.7 , pp. 356
    • Wilbur, W.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.