-
1
-
-
77953917404
-
Event extraction for systems biology by text mining the literature
-
Ananiadou, S. et al. (2010) Event extraction for systems biology by text mining the literature. Trends Biotechnol., 28, 381-390.
-
(2010)
Trends Biotechnol
, vol.28
, pp. 381-390
-
-
Ananiadou, S.1
-
2
-
-
71749114162
-
From annotator agreement to noise models
-
Beigman Klebanov, B. and Beigman, E. (2009) From annotator agreement to noise models. Comput. Linguist., 35, 495-503.
-
(2009)
Comput. Linguist.
, vol.35
, pp. 495-503
-
-
Beigman Klebanov, B.1
Beigman, E.2
-
3
-
-
0029370635
-
Automatic condensation of electronic publications by sentence selection
-
Brandow, R. et al. (1995) Automatic condensation of electronic publications by sentence selection. Inform. Process. Manag., 31, 675-685.
-
(1995)
Inform. Process. Manag.
, vol.31
, pp. 675-685
-
-
Brandow, R.1
-
4
-
-
79955702502
-
LIBSVM: a library for support vector machines
-
Chang, C.-C. and Lin, C.-J. (2011) LIBSVM: a library for support vector machines. ACM Trans. Intell. Syst. Technol., 2, 27:1-27:27.
-
(2011)
ACM Trans. Intell. Syst. Technol.
, vol.2
, Issue.27
, pp. 1-27
-
-
Chang, C.-C.1
Lin, C.-J.2
-
5
-
-
52949095016
-
The swan biomedical discourse ontology
-
Ciccarese, P. et al. (2008) The swan biomedical discourse ontology. J. Biomed. Inform., 41, 739-751.
-
(2008)
J. Biomed. Inform.
, vol.41
, pp. 739-751
-
-
Ciccarese, P.1
-
6
-
-
17244380380
-
A survey of current work in biomedical text a survey of current work in biomedical text mining
-
Cohen, A.M. and Hersh, W.R. (2005) A survey of current work in biomedical text a survey of current work in biomedical text mining. Brief. Bioinform., 6, 57-71.
-
(2005)
Brief. Bioinform.
, vol.6
, pp. 57-71
-
-
Cohen, A.M.1
Hersh, W.R.2
-
7
-
-
84973587732
-
A coefficient of agreement for nominal scales
-
Cohen, J. (1960) A coefficient of agreement for nominal scales. Educ. Psychol. Meas., 20, 37-46.
-
(1960)
Educ. Psychol. Meas.
, vol.20
, pp. 37-46
-
-
Cohen, J.1
-
9
-
-
85027501886
-
Identifying the epistemic value of discourse segments in biology texts
-
IWCS-8 '09, Association for Computational Linguistics, Stroudsburg, PA, USA
-
de Waard, A. et al. (2009) Identifying the epistemic value of discourse segments in biology texts. In Proceedings of the Eighth International Conference on Computational Semantics, IWCS-8 '09, Association for Computational Linguistics, Stroudsburg, PA, USA, pp. 351-354.
-
(2009)
Proceedings of the Eighth International Conference on Computational Semantics
, pp. 351-354
-
-
de Waard, A.1
-
10
-
-
72849113513
-
Apragmatic structure for research articles
-
ICPW '07, Association for Computing Machinery, New York, NY, USA
-
deWaard, A. (2007)Apragmatic structure for research articles. In Proceedings of the 2nd International Conference on PragmaticWeb, ICPW '07, Association for Computing Machinery, New York, NY, USA, pp. 83-89.
-
(2007)
Proceedings of the 2nd International Conference on PragmaticWeb
, pp. 83-89
-
-
deWaard, A.1
-
11
-
-
50949133669
-
LIBLINEAR: a library for large linear classification
-
Fan, R.-E. et al. (2008) LIBLINEAR: a library for large linear classification. J. Mach. Learn. Res., 9, 1871-1874.
-
(2008)
J. Mach. Learn. Res.
, vol.9
, pp. 1871-1874
-
-
Fan, R.-E.1
-
12
-
-
85111777321
-
Identifying the information structure of scientific abstracts: an investigation of three different schemes
-
Association for Computational Linguistics, Uppsala, Sweden
-
Guo, Y. et al. (2010) Identifying the information structure of scientific abstracts: an investigation of three different schemes. In Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, Association for Computational Linguistics, Uppsala, Sweden, pp. 99-107.
-
(2010)
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing
, pp. 99-107
-
-
Guo, Y.1
-
13
-
-
79952338946
-
A comparison and user-based evaluation of models of textual information structure in the context of cancer risk assessment
-
doi:10.1186/1471-2105-12-69
-
Guo, Y. et al. (2011) A comparison and user-based evaluation of models of textual information structure in the context of cancer risk assessment. BMC Bioinform., 12:69, doi:10.1186/1471-2105-12-69.
-
(2011)
BMC Bioinform.
, vol.12
, Issue.69
-
-
Guo, Y.1
-
14
-
-
62949115142
-
Identifying sections in scientific abstracts using conditional random fields
-
Hirohata, K. et al. (2008) Identifying sections in scientific abstracts using conditional random fields. In Proceedings of the IJCNLP 2008.
-
(2008)
Proceedings of the IJCNLP
, pp. 2008
-
-
Hirohata, K.1
-
15
-
-
56649091414
-
Recognizing speculative language in biomedical research articles: a linguistically motivated perspective
-
Kilicoglu, H. and Bergler, S. (2008) Recognizing speculative language in biomedical research articles: a linguistically motivated perspective. BMC Bioinform., 9 (Suppl. 11), S10.
-
(2008)
BMC Bioinform
, vol.9
, Issue.SUPPL. 11
-
-
Kilicoglu, H.1
Bergler, S.2
-
16
-
-
84901593338
-
Overview of BioNLP shared task 2011
-
Association for Computational Linguistics, Portland, Oregon, USA
-
Kim, J.-D. et al. (2011) Overview of BioNLP shared task 2011. In Proceedings of BioNLP Shared Task 2011 Workshop, Association for Computational Linguistics, Portland, Oregon, USA, pp. 1-6.
-
(2011)
Proceedings of BioNLP Shared Task 2011 Workshop
, pp. 1-6
-
-
Kim, J.-D.1
-
18
-
-
0029193387
-
A trainable document summarizer
-
SIGIR '95, Association for Computing Machinery, New York, NY, USA
-
Kupiec, J. et al. (1995) A trainable document summarizer. In Proceedings of the 18th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, SIGIR '95, Association for Computing Machinery, New York, NY, USA, pp. 68-73.
-
(1995)
Proceedings of the 18th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval
, pp. 68-73
-
-
Kupiec, J.1
-
19
-
-
84859226637
-
Guidelines for the annotation of general scientific concepts
-
JISC Project Report 88, Aberystwyth University
-
Liakata, M. and Soldatova, L. (2008) Guidelines for the annotation of general scientific concepts. Technical report, JISC Project Report 88, Aberystwyth University, http://ie-repository.jisc.ac.uk/88/.
-
(2008)
Technical report
-
-
Liakata, M.1
Soldatova, L.2
-
20
-
-
84859235883
-
The ART Corpus
-
Aberystwyth University
-
Liakata, M. and Soldatova, L. (2009) The ART Corpus. Technical report, Aberystwyth University, http://hdl.handle.net/2160/1979.
-
(2009)
Technical report
-
-
Liakata, M.1
Soldatova, L.2
-
21
-
-
85063155473
-
Semantic annotation of papers: interface & enrichment tool (SAPIENT)
-
Boulder, Colorado
-
Liakata, M. et al. (2009) Semantic annotation of papers: interface & enrichment tool (SAPIENT). In Proceedings of BioNLP-09, Boulder, Colorado, pp. 193-200.
-
(2009)
Proceedings of BioNLP-09
, pp. 193-200
-
-
Liakata, M.1
-
22
-
-
85019581590
-
Corpora for the conceptualization and zoning of scientific papers
-
(LREC'10), European Language Resources Association, Valletta, Maltapp
-
Liakata, M. et al. (2010) Corpora for the conceptualization and zoning of scientific papers. In Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC'10), European Language Resources Association, Valletta, Maltapp, pp. 2054-2061.
-
(2010)
Proceedings of the Seventh International Conference on Language Resources and Evaluation
, pp. 2054-2061
-
-
Liakata, M.1
-
23
-
-
29244479649
-
(2004) The language of bioscience: facts, speculations, and statements in between
-
Hirschman, L. and Pustejovsky, J. (eds), Association for Computational Linguistics, Boston, Massachusetts, USA
-
Light, M. et al. (2004) The language of bioscience: facts, speculations, and statements in between. In Hirschman, L. and Pustejovsky, J. (eds), HLT-NAACL 2004 Workshop: BioLINK 2004, Linking Biological Literature, Ontologies and Databases, Association for Computational Linguistics, Boston, Massachusetts, USA, pp. 17-24.
-
(2004)
HLT-NAACL 2004 Workshop: BioLINK Linking Biological Literature Ontologies and Databases
, pp. 17-24
-
-
Light, M.1
-
24
-
-
85021773694
-
Generative content models for structural analysis of medical abstracts
-
BioNLP '06, Association for Computational Linguistics, Morristown, NJ, USA
-
Lin, J. et al. (2006) Generative content models for structural analysis of medical abstracts. In Proceedings of theWorkshop on Linking Natural Language Processing and Biology: Towards Deeper Biological Literature Analysis, BioNLP '06, Association for Computational Linguistics, Morristown, NJ, USA, pp. 65-72.
-
(2006)
Proceedings of theWorkshop on Linking Natural Language Processing and Biology: Towards Deeper Biological Literature Analysis
, pp. 65-72
-
-
Lin, J.1
-
25
-
-
16544374908
-
Categorization of sentence types in medical abstracts
-
McKnight, L. and Srinivasan, P. (2003) Categorization of sentence types in medical abstracts. AMIA Annu Symp Proc, pp. 440-444.
-
(2003)
AMIA Annu Symp Proc
, pp. 440-444
-
-
McKnight, L.1
Srinivasan, P.2
-
26
-
-
84893396397
-
Weakly supervised learning for hedge classification in scientific literature
-
Prague, Czech Republic
-
Medlock, B. and Briscoe, T. (2007) Weakly supervised learning for hedge classification in scientific literature. In 45th Annual Meeting of the ACL, Prague, Czech Republic, pp. 23-30.
-
(2007)
45th Annual Meeting of the ACL
, pp. 23-30
-
-
Medlock, B.1
Briscoe, T.2
-
27
-
-
80054042581
-
Accurate argumentative zoning with maximum entropy models
-
NLPIR4DL '09, Association for Computational Linguistics, Morristown, NJ, USA
-
Merity, S. et al. (2009) Accurate argumentative zoning with maximum entropy models. In Proceedings of the 2009 Workshop on Text and Citation Analysis for Scholarly Digital Libraries, NLPIR4DL '09, Association for Computational Linguistics, Morristown, NJ, USA, pp. 19-26.
-
(2009)
Proceedings of the 2009 Workshop on Text and Citation Analysis for Scholarly Digital Libraries
, pp. 19-26
-
-
Merity, S.1
-
28
-
-
85023117841
-
Applied morphological processing of english
-
Minnen, G. et al. (2001) Applied morphological processing of english. Nat. Lang. Eng., 7, 207-223.
-
(2001)
Nat. Lang. Eng.
, vol.7
, pp. 207-223
-
-
Minnen, G.1
-
29
-
-
33646141828
-
Zone analysis in biology articles as a basis for information extraction
-
Mizuta, Y. et al. (2006) Zone analysis in biology articles as a basis for information extraction. Int. J. Med. Inform., 75, 468-487.
-
(2006)
Int. J. Med. Inform.
, vol.75
, pp. 468-487
-
-
Mizuta, Y.1
-
30
-
-
60749127748
-
A baseline feature set for learning rhetorical zones using full articles in the biomedical domain
-
Mullen, T. et al. (2005) A baseline feature set for learning rhetorical zones using full articles in the biomedical domain. SIGKDD Explor., 7, 52-58.
-
(2005)
SIGKDD Explor
, vol.7
, pp. 52-58
-
-
Mullen, T.1
-
31
-
-
84865518815
-
Meta-knowledge annotation of bio-events
-
Nawaz, R. et al. (2010) Meta-knowledge annotation of bio-events. In LREC, pp. 2498-2507.
-
(2010)
LREC
, pp. 2498-2507
-
-
Nawaz, R.1
-
32
-
-
84859225221
-
-
CRFsuite: a fast implementation of Conditional Random Fields (CRFs) (20 February 2012, date last accessed)
-
Okazaki, N. (2007) CRFsuite: a fast implementation of Conditional Random Fields (CRFs), http://www.chokkan.org/software/crfsuite/, (20 February 2012, date last accessed).
-
(2007)
-
-
Okazaki, N.1
-
33
-
-
70349454090
-
Porting a lexicalized-grammar parser to the biomedical domain
-
Rimell, L. and Clark, S. (2009) Porting a lexicalized-grammar parser to the biomedical domain. J. Biomed. Inform., 42, 852-865.
-
(2009)
J. Biomed. Inform.
, vol.42
, pp. 852-865
-
-
Rimell, L.1
Clark, S.2
-
34
-
-
33846894118
-
Using argumentation to extract key sentences from biomedical abstracts
-
Ruch, P. et al. (2007) Using argumentation to extract key sentences from biomedical abstracts. Int. J. Med. Inform., 76, 195-200.
-
(2007)
Int. J. Med. Inform.
, vol.76
, pp. 195-200
-
-
Ruch, P.1
-
35
-
-
51749123368
-
Multi-dimensional classification of biomedical text: toward automated, practical provision of high-utility text to diverse users
-
Shatkay, H. et al. (2008) Multi-dimensional classification of biomedical text: toward automated, practical provision of high-utility text to diverse users. J. Bioinform., 24:18, 2086-2093.
-
(2008)
J. Bioinform.
, vol.24
, Issue.18
, pp. 2086-2093
-
-
Shatkay, H.1
-
36
-
-
84957628231
-
Using localmaxs algorithm for the extraction of contiguous and non-contiguous multiword lexical units
-
EPIA '99, Springer, London, UK
-
Silva, J.F.d. et al. (1999) Using localmaxs algorithm for the extraction of contiguous and non-contiguous multiword lexical units. In Proceedings of the 9th Portuguese Conference on Artificial Intelligence: Progress in Artificial Intelligence, EPIA '99, Springer, London, UK, pp. 113-132.
-
(1999)
Proceedings of the 9th Portuguese Conference on Artificial Intelligence: Progress in Artificial Intelligence
, pp. 113-132
-
-
da Silva, J.F.1
-
37
-
-
33747884698
-
An ontology of scientific experiments
-
Soldatova, L. and King, R. (2006) An ontology of scientific experiments. J. Roy. Soc. Interf., 3, 795-803.
-
(2006)
J. Roy. Soc. Interf.
, vol.3
, pp. 795-803
-
-
Soldatova, L.1
King, R.2
-
38
-
-
84859261885
-
An ontology methodology and cisp-the proposed core information about scientific papers
-
JISC Project Report 137, Aberystwyth University
-
Soldatova, L. and Liakata, M. (2007) An ontology methodology and cisp-the proposed core information about scientific papers. Technical Report. JISC Project Report 137, Aberystwyth University, http://ie-repository.jisc.ac.uk/137/.
-
(2007)
Technical Report
-
-
Soldatova, L.1
Liakata, M.2
-
39
-
-
0040078056
-
Summarizing scientific articles: experiments with relevance and rhetorical status
-
Teufel, S. and Moens, M. (2002) Summarizing scientific articles: experiments with relevance and rhetorical status. Comput. Linguist., 28, 409-445.
-
(2002)
Comput. Linguist.
, vol.28
, pp. 409-445
-
-
Teufel, S.1
Moens, M.2
-
40
-
-
85027513805
-
An annotation scheme for discourse-level argumentation in research articles
-
Teufel, S. et al. (1999) An annotation scheme for discourse-level argumentation in research articles. In Proceedings of EACL, pp. 110-117.
-
(1999)
Proceedings of EACL
, pp. 110-117
-
-
Teufel, S.1
-
41
-
-
80053410932
-
Towards discipline-independent argumentative zoning: evidence from chemistry and computational linguistics
-
EMNLP '09, Association for Computational Linguistics, Stroudsburg, PA, USA
-
Teufel, S. et al. (2009) Towards discipline-independent argumentative zoning: evidence from chemistry and computational linguistics. In Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing: Volume 3 -Volume 3, EMNLP '09, Association for Computational Linguistics, Stroudsburg, PA, USA, pp. 1493-1502.
-
(2009)
Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing: Volume 3 -Volume 3
, pp. 1493-1502
-
-
Teufel, S.1
-
43
-
-
79953288537
-
-
Stanford: CSLI Publications, CSLI Studies in Computational Linguistics, Stanford, California, United States
-
Teufel, S. (2010) The Structure of Scientific Articles: Applications to Citation Indexing and Summarization. Stanford: CSLI Publications, CSLI Studies in Computational Linguistics, Stanford, California, United States.
-
(2010)
The Structure of Scientific Articles: Applications to Citation Indexing and Summarization.
-
-
Teufel, S.1
-
44
-
-
80053578996
-
Enriching a biomedical event corpus with meta-knowledge annotation
-
Thompson, P. et al. (2011) Enriching a biomedical event corpus with meta-knowledge annotation. BMC Bioinform., 12, 393.
-
(2011)
BMC Bioinform
, vol.12
, pp. 393
-
-
Thompson, P.1
-
45
-
-
84859231419
-
Hypothesis and evidence extraction from full-text scientific journal articles
-
Association for Computational Linguistics, Portland, Oregon, USA
-
White, E. et al. (2011) Hypothesis and evidence extraction from full-text scientific journal articles. In Proceedings of BioNLP 2011 Workshop, Association for Computational Linguistics, Portland, Oregon, USA, pp. 134-135.
-
(2011)
Proceedings of BioNLP 2011 Workshop
, pp. 134-135
-
-
White, E.1
-
46
-
-
33748373597
-
New directions in biomedical text annotations: definitions, guidelines and corpus construction
-
Wilbur, W.J. et al. (2006) New directions in biomedical text annotations: definitions, guidelines and corpus construction. BMC Bioinform., 7, 356.
-
(2006)
BMC Bioinform
, vol.7
, pp. 356
-
-
Wilbur, W.J.1
|