-
1
-
-
65449188351
-
Appreciating HIV type 1 diversity: Subtype differences in env
-
Lynch RM, Shen T, Gnanakaran S, and Derdeyn CA: Appreciating HIV type 1 diversity: Subtype differences in Env. AIDS Res Hum Retroviruses 2009;25(3):237-248.
-
(2009)
AIDS Res Hum Retroviruses
, vol.25
, Issue.3
, pp. 237-248
-
-
Lynch, R.M.1
Shen, T.2
Gnanakaran, S.3
Derdeyn, C.A.4
-
2
-
-
33745621323
-
Global epidemiology of HIV
-
McCutchan FE: Global epidemiology of HIV. J Med Virol 2006;78(Suppl 1):S7-S12.
-
(2006)
J Med Virol
, vol.78
, Issue.SUPPL. 1
-
-
Mccutchan, F.E.1
-
4
-
-
68249140390
-
Global HIV-1 molecular epidemiology with special reference to genetic analysis of HIV-1 subtypes circulating in North India: Functional and pathogenic implications of genetic variation
-
Neogi U, Sood V, Banerjee S, et al.: Global HIV-1 molecular epidemiology with special reference to genetic analysis of HIV-1 subtypes circulating in North India: Functional and pathogenic implications of genetic variation. Indian J Exp Biol 2009;47(6):424-431.
-
(2009)
Indian J Exp Biol
, vol.47
, Issue.6
, pp. 424-431
-
-
Neogi, U.1
Sood, V.2
Banerjee, S.3
-
5
-
-
79952414942
-
Global trends in molecular epidemiology of HIV-1 during 2000-2007
-
Hemelaar J, Gouws E, Ghys PD, and Osmanov S: Global trends in molecular epidemiology of HIV-1 during 2000-2007. AIDS 2011;25(5):679-689.
-
(2011)
AIDS
, vol.25
, Issue.5
, pp. 679-689
-
-
Hemelaar, J.1
Gouws, E.2
Ghys, P.D.3
Osmanov, S.4
-
6
-
-
33745339957
-
The challenges of host and viral diversity in HIV vaccine design
-
Brander C, Frahm N, and Walker BD: The challenges of host and viral diversity in HIV vaccine design. Curr Opin Immunol 2006;18(4):430-437.
-
(2006)
Curr Opin Immunol
, vol.18
, Issue.4
, pp. 430-437
-
-
Brander, C.1
Frahm, N.2
Walker, B.D.3
-
7
-
-
38949169587
-
Coping with viral diversity in HIV vaccine design: A response to nickle et al
-
Fischer W, Liao HX, Haynes BF, Letvin NL, and Korber B: Coping with viral diversity in HIV vaccine design: A response to Nickle et al. PLoS Comput Biol 2008;4(1):e15.
-
(2008)
PLoS Comput Biol
, vol.4
, Issue.1
-
-
Fischer, W.1
Liao, H.X.2
Haynes, B.F.3
Letvin, N.L.4
Korber, B.5
-
8
-
-
19944427052
-
Antigenicity and immuno-genicity of a synthetic human immunodeficiency virus type 1 group m consensus envelope glycoprotein
-
Gao F, Weaver EA, Lu Z, et al.: Antigenicity and immuno-genicity of a synthetic human immunodeficiency virus type 1 group m consensus envelope glycoprotein. J Virol 2005;79(2): 1154-1163.
-
(2005)
J Virol
, vol.79
, Issue.2
, pp. 1154-1163
-
-
Gao, F.1
Weaver, E.A.2
Lu, Z.3
-
10
-
-
33745771090
-
Cross-subtype T-cell immune responses induced by a human immunodeficiency virus type 1 group m consensus env immunogen
-
Weaver EA, Lu Z, Camacho ZT, et al.: Cross-subtype T-cell immune responses induced by a human immunodeficiency virus type 1 group m consensus env immunogen. J Virol 2006;80(14):6745-6756.
-
(2006)
J Virol
, vol.80
, Issue.14
, pp. 6745-6756
-
-
Weaver, E.A.1
Lu, Z.2
Camacho, Z.T.3
-
11
-
-
77949263061
-
Mosaic HIV-1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys
-
Barouch DH, O'Brien KL, Simmons NL, et al.: Mosaic HIV-1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys. Nat Med 2010;16(3): 319-323.
-
(2010)
Nat Med
, vol.16
, Issue.3
, pp. 319-323
-
-
Barouch, D.H.1
O'Brien, K.L.2
Simmons, N.L.3
-
12
-
-
77949264937
-
Mosaic vaccines elicit CD8+ T lymphocyte responses that confer enhanced immune coverage of diverse HIV strains in monkeys
-
Santra S, Liao HX, Zhang R, et al.: Mosaic vaccines elicit CD8+ T lymphocyte responses that confer enhanced immune coverage of diverse HIV strains in monkeys. Nat Med 2010;16(3):324-328.
-
(2010)
Nat Med
, vol.16
, Issue.3
, pp. 324-328
-
-
Santra, S.1
Liao, H.X.2
Zhang, R.3
-
13
-
-
34547811379
-
Reconstruction and function of ancestral center-of-tree human immunodeficiency virus type 1 proteins
-
Rolland M, Jensen MA, Nickle DC, et al.: Reconstruction and function of ancestral center-of-tree human immunodeficiency virus type 1 proteins. J Virol 2007;81(16): 8507-8514.
-
(2007)
J Virol
, vol.81
, Issue.16
, pp. 8507-8514
-
-
Rolland, M.1
Jensen, M.A.2
Nickle, D.C.3
-
14
-
-
4344660751
-
Centralized immunogens as a vaccine strategy to overcome HIV-1 diversity
-
Gao F, Korber BT, Weaver E, et al.: Centralized immunogens as a vaccine strategy to overcome HIV-1 diversity. Expert Rev Vaccines 2004;3(4 Suppl):S161-168.
-
(2004)
Expert Rev Vaccines
, vol.3
, Issue.4 SUPPL.
-
-
Gao, F.1
Korber, B.T.2
Weaver, E.3
-
15
-
-
33747041588
-
Ancestral and consensus envelope immunogens for HIV-1 subtype C
-
Kothe DL, Li Y, Decker JM, et al.: Ancestral and consensus envelope immunogens for HIV-1 subtype C. Virology 2006;352(2):438-449.
-
(2006)
Virology
, vol.352
, Issue.2
, pp. 438-449
-
-
Kothe, D.L.1
Li, Y.2
Decker, J.M.3
-
17
-
-
58449120009
-
* allele-associated multi-clade gag T-cell recognition correlates with slow HIV-1 disease progression in antiretroviral therapy-naive ugandans
-
* allele-associated multi-clade Gag T-cell recognition correlates with slow HIV-1 disease progression in antiretroviral therapy-naive Ugandans. PLoS One 2009;4(1):e4188.
-
(2009)
PLoS One
, vol.4
, Issue.1
-
-
Serwanga, J.1
Shafer, L.A.2
Pimego, E.3
-
18
-
-
34848833167
-
CTL response to HIV type 1 subtype C is poorly predicted by known epitope motifs
-
Ngandu NG, Bredell H, Gray CM, Williamson C, and Seoighe C: CTL response to HIV type 1 subtype C is poorly predicted by known epitope motifs. AIDS Res Hum Retro-viruses 2007;23(8):1033-1041.
-
(2007)
AIDS Res Hum Retro-viruses
, vol.23
, Issue.8
, pp. 1033-1041
-
-
Ngandu, N.G.1
Bredell, H.2
Gray, C.M.3
Williamson, C.4
Seoighe, C.5
-
19
-
-
34548751162
-
ViroBLAST: A stand-alone BLAST web server for flexible queries of multiple databases and user's datasets
-
Deng W, Nickle DC, Learn GH, Maust B, and Mullins JI: ViroBLAST: A stand-alone BLAST web server for flexible queries of multiple databases and user's datasets. Bioinfor-matics 2007;23(17):2334-2336.
-
(2007)
Bioinfor-matics
, vol.23
, Issue.17
, pp. 2334-2336
-
-
Deng, W.1
Nickle, D.C.2
Learn, G.H.3
Maust, B.4
Mullins, J.I.5
-
20
-
-
27544496497
-
An automated genotyping system for analysis of HIV-1 and other microbial sequences
-
de Oliveira T, Deforche K, Cassol S, et al.: An automated genotyping system for analysis of HIV-1 and other microbial sequences. Bioinformatics 2005;21(19):3797-3800.
-
(2005)
Bioinformatics
, vol.21
, Issue.19
, pp. 3797-3800
-
-
De Oliveira, T.1
Deforche, K.2
Cassol, S.3
-
21
-
-
0032889281
-
Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of inter-subtype recombination
-
Lole KS, Bollinger RC, Paranjape RS, et al.: Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of inter-subtype recombination. J Virol 1999;73(1):152-160.
-
(1999)
J Virol
, vol.73
, Issue.1
, pp. 152-160
-
-
Lole, K.S.1
Bollinger, R.C.2
Paranjape, R.S.3
-
22
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC: MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004;32(5): 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
24
-
-
72949117881
-
HIV-1 subtypes and differences in heterosexual HIV transmission among HIV-discordant couples in rakai, uganda
-
Kiwanuka N, Laeyendecker O, Quinn TC, et al.: HIV-1 subtypes and differences in heterosexual HIV transmission among HIV-discordant couples in Rakai, Uganda. AIDS 2009;23(18):2479-2484.
-
(2009)
AIDS
, vol.23
, Issue.18
, pp. 2479-2484
-
-
Kiwanuka, N.1
Laeyendecker, O.2
Quinn, T.C.3
-
25
-
-
40549121269
-
Effect of human immunodeficiency virus type 1 (HIV-1) subtype on disease progression in persons from rakai, uganda, with incident HIV-1 infection
-
Kiwanuka N, Laeyendecker O, Robb M, et al.: Effect of human immunodeficiency virus type 1 (HIV-1) subtype on disease progression in persons from Rakai, Uganda, with incident HIV-1 infection. J Infect Dis 2008;197(5): 707-713.
-
(2008)
J Infect Dis
, vol.197
, Issue.5
, pp. 707-713
-
-
Kiwanuka, N.1
Laeyendecker, O.2
Robb, M.3
-
26
-
-
38949183739
-
Clade specific neutralising vaccines for HIV: An appropriate target?
-
McKnight A and Aasa-Chapman MM: Clade specific neutralising vaccines for HIV: An appropriate target? Curr HIV Res 2007;5(6):554-560.
-
(2007)
Curr HIV Res
, vol.5
, Issue.6
, pp. 554-560
-
-
Mcknight, A.1
Aasa-Chapman, M.M.2
-
27
-
-
38949176103
-
Centralized HIV-1 envelope immunogens and neutralizing antibodies
-
Gao F, Liao HX, Hahn BH, et al.: Centralized HIV-1 envelope immunogens and neutralizing antibodies. Curr HIV Res 2007;5(6):572-577.
-
(2007)
Curr HIV Res
, vol.5
, Issue.6
, pp. 572-577
-
-
Gao, F.1
Liao, H.X.2
Hahn, B.H.3
-
28
-
-
39849086635
-
Increased detection of HIV-specific T cell responses by combination of central se- quences with comparable immunogenicity
-
Frahm N, Nickle DC, Linde CH, et al.: Increased detection of HIV-specific T cell responses by combination of central se- quences with comparable immunogenicity. AIDS 2008;22(4): 447-456.
-
(2008)
AIDS
, vol.22
, Issue.4
, pp. 447-456
-
-
Frahm, N.1
Nickle, D.C.2
Linde, C.H.3
-
29
-
-
33645028090
-
Group M-based HIV-1 gag peptides are frequently targeted by T cells in chronically infected US and zambian patients
-
Bansal A, Gough E, Ritter D, et al.: Group M-based HIV-1 Gag peptides are frequently targeted by T cells in chronically infected US and Zambian patients. AIDS 2006;20(3):353-360.
-
(2006)
AIDS
, vol.20
, Issue.3
, pp. 353-360
-
-
Bansal, A.1
Gough, E.2
Ritter, D.3
-
30
-
-
23044433381
-
HIV-1 MN env 15-mer peptides better detect HIV-1 specific CD8 T cell responses compared with consensus subtypes B and M group 15-mer peptides
-
Rutebemberwa A, Currier JR, Jagodzinski L, et al.: HIV-1 MN Env 15-mer peptides better detect HIV-1 specific CD8 T cell responses compared with consensus subtypes B and M group 15-mer peptides. AIDS 2005;19(11):1165-1172.
-
(2005)
AIDS
, vol.19
, Issue.11
, pp. 1165-1172
-
-
Rutebemberwa, A.1
Currier, J.R.2
Jagodzinski, L.3
-
31
-
-
70350221713
-
Candidate vaccine sequences to represent intra-and inter-clade HIV-1 variation
-
Yang OO: Candidate vaccine sequences to represent intra-and inter-clade HIV-1 variation. PLoS One 2009;4(10):e7388.
-
(2009)
PLoS One
, vol.4
, Issue.10
-
-
Yang, O.O.1
-
32
-
-
53349160053
-
Challenges in the development of an HIV-1 vaccine
-
Barouch DH: Challenges in the development of an HIV-1 vaccine. Nature 2008;455(7213):613-619.
-
(2008)
Nature
, vol.455
, Issue.7213
, pp. 613-619
-
-
Barouch, D.H.1
-
33
-
-
34249068954
-
An HIV vaccine-evolving concepts
-
Johnston MI: An HIV vaccine-evolving concepts. N Engl J Med 2007;356(20):2073-2081.
-
(2007)
N Engl J Med
, vol.356
, Issue.20
, pp. 2073-2081
-
-
Johnston, M.I.1
-
34
-
-
73349094086
-
Vaccination with ALVAC and AIDSVAX to prevent HIV-1 infection in Thailand
-
Rerks-Ngarm S, Pitisuttithum P, Nitayaphan S, et al.: Vaccination with ALVAC and AIDSVAX to prevent HIV-1 infection in Thailand. N Engl J Med 2009;361(23):2209-2220.
-
(2009)
N Engl J Med
, vol.361
, Issue.23
, pp. 2209-2220
-
-
Rerks-Ngarm, S.1
Pitisuttithum, P.2
Nitayaphan, S.3
-
35
-
-
59649108841
-
Protective HLA class I alleles that restrict acute-phase CD8 + T-cell responses are associated with viral escape mutations located in highly conserved regions of human immunodeficiency virus type 1
-
Wang YE, Li B, Carlson JM, et al.: Protective HLA class I alleles that restrict acute-phase CD8 + T-cell responses are associated with viral escape mutations located in highly conserved regions of human immunodeficiency virus type 1. J Virol 2009;83(4):1845-1855.
-
(2009)
J Virol
, vol.83
, Issue.4
, pp. 1845-1855
-
-
Wang, Y.E.1
Li, B.2
Carlson, J.M.3
-
36
-
-
41549136952
-
Design and pre-clinical evaluation of a universal HIV-1 vaccine
-
Letourneau S, Im EJ, Mashishi T, et al.: Design and pre-clinical evaluation of a universal HIV-1 vaccine. PLoS One 2007;2(10):e984.
-
(2007)
PLoS One
, vol.2
, Issue.10
-
-
Letourneau, S.1
Im, E.J.2
Mashishi, T.3
-
37
-
-
79958726847
-
Mapping HIV-1 vaccine induced T-cell responses: Bias towards less-conserved regions and potential impact on vaccine efficacy in the step study
-
Li F, Finnefrock AC, Dubey SA, et al.: Mapping HIV-1 vaccine induced T-cell responses: Bias towards less-conserved regions and potential impact on vaccine efficacy in the Step Study. PLoS One 2011;6(6):e20479.
-
(2011)
PLoS One
, vol.6
, Issue.6
-
-
Li, F.1
Finnefrock, A.C.2
Dubey, S.A.3
-
38
-
-
58149375456
-
Elite control of HIV infection: Implications for vaccine design
-
Baker BM, Block BL, Rothchild AC, and Walker BD: Elite control of HIV infection: Implications for vaccine design. Expert Opin Biol Ther 2009;9(1):55-69.
-
(2009)
Expert Opin Biol Ther
, vol.9
, Issue.1
, pp. 55-69
-
-
Baker, B.M.1
Block, B.L.2
Rothchild, A.C.3
Walker, B.D.4
-
39
-
-
43949124825
-
HLA class I-restricted T-cell responses may contribute to the control of human immunodeficiency virus infection, but such responses are not always necessary for long-term virus control
-
Emu B, Sinclair E, Hatano H, et al.: HLA class I-restricted T-cell responses may contribute to the control of human immunodeficiency virus infection, but such responses are not always necessary for long-term virus control. J Virol 2008;82(11):5398-5407.
-
(2008)
J Virol
, vol.82
, Issue.11
, pp. 5398-5407
-
-
Emu, B.1
Sinclair, E.2
Hatano, H.3
-
40
-
-
62749177486
-
*5801 human immunodeficiency virus type 1 elite controllers select for rare gag variants associated with reduced viral replication capacity and strong cytotoxic T-lymphocyte [corrected] recognition
-
*5801 human immunodeficiency virus type 1 elite controllers select for rare gag variants associated with reduced viral replication capacity and strong cytotoxic T-lymphocyte [corrected] recognition. J Virol 2009;83(6):2743-2755.
-
(2009)
J Virol
, vol.83
, Issue.6
, pp. 2743-2755
-
-
Miura, T.1
Brockman, M.A.2
Schneidewind, A.3
-
41
-
-
0028122380
-
Shutting down HIV
-
Koup RA and Ho DD: Shutting down HIV. Nature 1994;370(6489):416.
-
(1994)
Nature
, vol.370
, Issue.6489
, pp. 416
-
-
Koup, R.A.1
Ho, D.D.2
-
42
-
-
78049495989
-
Early selection in gag by protective HLA alleles contributes to reduced HIV-1 replication capacity that may be largely compensated for in chronic infection
-
Brockman MA, Brumme ZL, Brumme CJ, et al.: Early selection in Gag by protective HLA alleles contributes to reduced HIV-1 replication capacity that may be largely compensated for in chronic infection. J Virol 2010;84(22):11937-11949.
-
(2010)
J Virol
, vol.84
, Issue.22
, pp. 11937-11949
-
-
Brockman, M.A.1
Brumme, Z.L.2
Brumme, C.J.3
-
43
-
-
33646686040
-
HIV nonprogressors preferentially maintain highly functional HIV-specific CD8 + T cells
-
Betts MR, Nason MC, West SM, et al.: HIV nonprogressors preferentially maintain highly functional HIV-specific CD8 + T cells. Blood 2006;107(12):4781-4789.
-
(2006)
Blood
, vol.107
, Issue.12
, pp. 4781-4789
-
-
Betts, M.R.1
Nason, M.C.2
West, S.M.3
-
44
-
-
61949216736
-
Effector memory T cell responses are associated with protection of rhesus monkeys from mucosal simian immunodeficiency virus challenge
-
Hansen SG, Vieville C, Whizin N, et al.: Effector memory T cell responses are associated with protection of rhesus monkeys from mucosal simian immunodeficiency virus challenge. Nat Med 2009;15(3):293-299.
-
(2009)
Nat Med
, vol.15
, Issue.3
, pp. 293-299
-
-
Hansen, S.G.1
Vieville, C.2
Whizin, N.3
-
45
-
-
20144384850
-
Characterization of functional and phenotypic changes in anti-gag vaccine-induced T cell responses and their role in protection after HIV-1 infection
-
Betts MR, Exley B, Price DA, et al.: Characterization of functional and phenotypic changes in anti-Gag vaccine-induced T cell responses and their role in protection after HIV-1 infection. Proc Natl Acad Sci USA 2005;102(12):4512- 4517.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.12
, pp. 4512-4517
-
-
Betts, M.R.1
Exley, B.2
Price, D.A.3
-
46
-
-
0038806352
-
Enhanced de-tectionofhuman immunodeficiency virus type 1-specific T-cell responses to highly variable regions by using peptides based on autologous virus sequences
-
Altfeld M, Addo MM, Shankarappa R, et al.: Enhanced de-tectionofhuman immunodeficiency virus type 1-specific T-cell responses to highly variable regions by using peptides based on autologous virus sequences. J Virol 2003;77(13):7330-7340.
-
(2003)
J Virol
, vol.77
, Issue.13
, pp. 7330-7340
-
-
Altfeld, M.1
Addo, M.M.2
Shankarappa, R.3
-
47
-
-
56649105122
-
Efficacy assessment of a cell-mediated immunity HIV-1 vaccine (the step study): A double-blind, randomised, placebo-controlled, test-of-concept trial
-
Buchbinder SP, Mehrotra DV, Duerr A, et al.: Efficacy assessment of a cell-mediated immunity HIV-1 vaccine (the Step Study): A double-blind, randomised, placebo-controlled, test-of-concept trial. Lancet 2008;372(9653):1881-1893.
-
(2008)
Lancet
, vol.372
, Issue.9653
, pp. 1881-1893
-
-
Buchbinder, S.P.1
Mehrotra, D.V.2
Duerr, A.3
-
48
-
-
15044338758
-
Two sample tests for comparing intra-individual genetic sequence diversity between populations
-
Gilbert PB, Rossini AJ, Shankarappa R. Two sample tests for comparing intra-individual genetic sequence diversity between populations. Biometrics 2005;61(1):106-117.
-
(2005)
Biometrics
, vol.61
, Issue.1
, pp. 106-117
-
-
Gilbert, P.B.1
Rossini, A.J.2
Shankarappa, R.3
|