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Volumn 52, Issue 3, 2012, Pages 670-677

Exploration of 3D activity cliffs on the basis of compound binding modes and comparison of 2D and 3D cliffs

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; COMPLEXATION; CONFORMATIONS; GRAPHIC METHODS;

EID: 84859169320     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci300033e     Document Type: Article
Times cited : (23)

References (20)
  • 2
    • 78649844432 scopus 로고    scopus 로고
    • Activity Landscape Representations for Structure-Activity Relationship Analysis
    • Wassermann, A. M.; Wawer, M.; Bajorath, J. Activity Landscape Representations for Structure-Activity Relationship Analysis J. Med. Chem. 2010, 53, 8209-8223
    • (2010) J. Med. Chem. , vol.53 , pp. 8209-8223
    • Wassermann, A.M.1    Wawer, M.2    Bajorath, J.3
  • 3
    • 33746931581 scopus 로고    scopus 로고
    • On Outliers and Activity Cliffs - Why QSAR often Disappoints
    • Maggiora, G. M. On Outliers and Activity Cliffs - Why QSAR often Disappoints J. Chem. Inf. Model. 2006, 46, 1535-1535
    • (2006) J. Chem. Inf. Model. , vol.46 , pp. 1535-1535
    • Maggiora, G.M.1
  • 4
    • 84859179256 scopus 로고    scopus 로고
    • Exploring Activity Cliffs in Medicinal Chemistry
    • DOI: 10.1021/jm201706b.
    • Stumpfe, D.; Bajorath, J. Exploring Activity Cliffs in Medicinal Chemistry. J. Med. Chem. 2012, 55, DOI: 10.1021/jm201706b.
    • (2012) J. Med. Chem. , pp. 55
    • Stumpfe, D.1    Bajorath, J.2
  • 5
    • 84555194686 scopus 로고    scopus 로고
    • Assessing the Confidence Level of Public Domain Compound Activity Data and the Impact of Alternative Potency Measurements on SAR Analysis
    • Stumpfe, D.; Bajorath, J. Assessing the Confidence Level of Public Domain Compound Activity Data and the Impact of Alternative Potency Measurements on SAR Analysis J. Chem. Inf. Model. 2011, 51, 3131-3137
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 3131-3137
    • Stumpfe, D.1    Bajorath, J.2
  • 6
    • 77954082092 scopus 로고    scopus 로고
    • Rationalizing Three-Dimensional Activity Landscapes and the Influence of Molecular Representations on Landscape Topology and the Formation of Activity Cliffs
    • Peltason, L.; Iyer, P.; Bajorath, J. Rationalizing Three-Dimensional Activity Landscapes and the Influence of Molecular Representations on Landscape Topology and the Formation of Activity Cliffs J. Chem. Inf. Model. 2010, 50, 1021-1033
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 1021-1033
    • Peltason, L.1    Iyer, P.2    Bajorath, J.3
  • 8
    • 79959746718 scopus 로고    scopus 로고
    • Single R-Group Polymorphisms (SRPs) and R-Cliffs: An Intuitive Framework for Analyzing and Visualizing Activity Cliffs in a Single Analog Series
    • Agrafiotis, D. K.; Wiener, J. J. M.; Skalkin, A.; Kolpak, J. Single R-Group Polymorphisms (SRPs) and R-Cliffs: An Intuitive Framework for Analyzing and Visualizing Activity Cliffs in a Single Analog Series J. Chem. Inf. Model. 2011, 51, 1122-1132
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 1122-1132
    • Agrafiotis, D.K.1    Wiener, J.J.M.2    Skalkin, A.3    Kolpak, J.4
  • 9
    • 78049415439 scopus 로고    scopus 로고
    • Chemical Substitutions That Introduce Activity Cliffs across Different Compound Classes and Biological Targets
    • Wassermann, A. M.; Bajorath, J. Chemical Substitutions That Introduce Activity Cliffs across Different Compound Classes and Biological Targets J. Chem. Inf. Model. 2010, 50, 1248-1256
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 1248-1256
    • Wassermann, A.M.1    Bajorath, J.2
  • 10
    • 80052080825 scopus 로고    scopus 로고
    • From Activity Cliffs to Target-specific Scoring Models and Pharmacophore Hypotheses
    • Seebeck, B.; Wagener, M.; Rarey, M. From Activity Cliffs to Target-specific Scoring Models and Pharmacophore Hypotheses ChemMedChem 2011, 6, 1630-1639
    • (2011) ChemMedChem , vol.6 , pp. 1630-1639
    • Seebeck, B.1    Wagener, M.2    Rarey, M.3
  • 11
    • 80051982094 scopus 로고    scopus 로고
    • From Activity Cliffs to Activity Ridges: Informative Data Structures for SAR Analysis
    • Vogt, M.; Huang, Y.; Bajorath, J. From Activity Cliffs to Activity Ridges: Informative Data Structures for SAR Analysis J. Chem. Inf. Model. 2011, 51, 1848-1856
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 1848-1856
    • Vogt, M.1    Huang, Y.2    Bajorath, J.3
  • 12
    • 79960362109 scopus 로고    scopus 로고
    • Comprehensive Analysis of Single- and Multi-Target Activity Cliffs Formed by Currently Available Bioactive Compounds
    • Wassermann, A. M.; Dimova, D.; Bajorath, J. Comprehensive Analysis of Single- and Multi-Target Activity Cliffs Formed by Currently Available Bioactive Compounds Chem. Biol. Drug Des. 2011, 78, 224-228
    • (2011) Chem. Biol. Drug Des. , vol.78 , pp. 224-228
    • Wassermann, A.M.1    Dimova, D.2    Bajorath, J.3
  • 13
    • 70350507116 scopus 로고    scopus 로고
    • Structural Interpretation of Activity Cliffs Revealed by Systematic Analysis of Structure-Activity Relationships in Analog Series
    • Sisay, M. T.; Peltason, L.; Bajorath, J. Structural Interpretation of Activity Cliffs Revealed by Systematic Analysis of Structure-Activity Relationships in Analog Series J. Chem. Inf. Model. 2009, 49, 2179-2189
    • (2009) J. Chem. Inf. Model. , vol.49 , pp. 2179-2189
    • Sisay, M.T.1    Peltason, L.2    Bajorath, J.3
  • 15
    • 34248576316 scopus 로고    scopus 로고
    • Molecular Similarity Analysis Uncovers the Presence of Heterogeneous Structure-Activity Relationships and Variable Activity Landscapes within Active Sites
    • Peltason, L.; Bajorath, J. Molecular Similarity Analysis Uncovers the Presence of Heterogeneous Structure-Activity Relationships and Variable Activity Landscapes within Active Sites Chem. Biol. 2007, 14, 489-497
    • (2007) Chem. Biol. , vol.14 , pp. 489-497
    • Peltason, L.1    Bajorath, J.2
  • 16
    • 0342645331 scopus 로고    scopus 로고
    • Chemical Computing Group Inc. Montreal, Quebec, Canada.
    • MOE (Molecular Operating Environment); Chemical Computing Group Inc.: Montreal, Quebec, Canada, 2007.
    • (2007) MOE (Molecular Operating Environment)
  • 17
    • 21244468757 scopus 로고    scopus 로고
    • Searching Techniques for Databases of Two- and Three-Dimensional Structures
    • Willett, P. Searching Techniques for Databases of Two- and Three-Dimensional Structures J. Med. Chem. 2005, 48, 4183-4199
    • (2005) J. Med. Chem. , vol.48 , pp. 4183-4199
    • Willett, P.1
  • 18
    • 2042489375 scopus 로고    scopus 로고
    • Symyx Software: San Ramon, CA.
    • MACCS Structural Keys; Symyx Software: San Ramon, CA, 2005.
    • (2005) MACCS Structural Keys
  • 19
    • 53549123322 scopus 로고    scopus 로고
    • Structure-Activity Relationship Anatomy by Network-like Similarity Graphs and Local Structure-Activity Relationship Indices
    • Wawer, M.; Peltason, L.; Weskamp, N.; Teckentrup, A.; Bajorath, J. Structure-Activity Relationship Anatomy by Network-like Similarity Graphs and Local Structure-Activity Relationship Indices J. Med. Chem. 2008, 51, 6075-6084
    • (2008) J. Med. Chem. , vol.51 , pp. 6075-6084
    • Wawer, M.1    Peltason, L.2    Weskamp, N.3    Teckentrup, A.4    Bajorath, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.