Endosomal trafficking pathway regulated by ARA6, a RAB5 GTPase unique to plants

Small GTPases

Volumn 3, Issue 1, 2012, Pages

  Ebine, Kazuo ^a,c   Miyakawa, Naoto ^a   Fujimoto, Masaru ^a   Uemura, Tomohiro ^a   Nakano, Akihiko ^a,b   Ueda, Takashi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b RIKEN   (Japan)

^c NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

Author keywords

ARA6; Arabidopsis thaliana; Endosome; Rab5; SNARE; Stress response

Indexed keywords

ARA6 PROTEIN; GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR; MEMBRANE PROTEIN; RAB GDP DISSOCIATION INHIBITOR; RAB PROTEIN; SNARE PROTEIN; UNCLASSIFIED DRUG; VAMP727 PROTEIN; VEGETABLE PROTEIN; VPS9A PROTEIN; ARABIDOPSIS PROTEIN;

ARABIDOPSIS; ARTICLE; CELL MEMBRANE TRANSPORT; COMPLEX FORMATION; ENDOSOME; GENETIC ANALYSIS; GENETIC VARIABILITY; LOSS OF FUNCTION MUTATION; MOLECULAR BIOLOGY; NONHUMAN; ORTHOLOGY; PHENOTYPE; PLANT EVOLUTION; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN INTERACTION; PROTEIN LOCALIZATION; PROTEIN STRUCTURE; PROTEIN TRANSPORT; SALT STRESS; WILD TYPE; CELL MEMBRANE; ENZYMOLOGY; METABOLISM;

ANIMALIA; ARABIDOPSIS THALIANA; EUKARYOTA;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELL MEMBRANE; ENDOSOMES; RAB GTP-BINDING PROTEINS;

EID: 84859092534     PISSN: 21541248     EISSN: 21541256     Source Type: Journal    
DOI: 10.4161/sgtp.3.1.18299     Document Type: Article

References (30)

1. Ebine K, Ueda T. Unique mechanism of plant endocytic/vacuolar transport pathways. J Plant Res 2009; 122:21-30; PMID:19082690; http://dx.doi.org/10.1007/s10265-008-0200-x
2. Dacks JB, Field MC. Evolution of the eukaryotic membrane-trafficking system: origin, tempo and mode. J Cell Sci 2007; 120:2977-2985; PMID:17715154; http://dx.doi.org/10.1242/jcs.013250
3. Elias M. Patterns and processes in the evolution of the eukaryotic endomembrane system. Mol Membr Biol 2010; 27:469-489; PMID:21067450; http://dx.doi.org/10.3109/09687688.2010.521201
4. Pereira-Leal JB, Seabra MC. Evolution of the Rab family of small GTP-binding proteins. J Mol Biol 2001; 313:889-901; PMID:11697911; http://dx.doi.org/10.1006/jmbi.2001.5072
5. Langsley G, van Noort V, Carret C, Meissner M, de Villiers EP, Bishop R, et al. Comparative genomics of the Rab protein family in Apicomplexan parasites. Microbes Infect 2008; 10:462-470; PMID:18468471; http://dx.doi.org/10.1016/j.micinf.2008.01.017
6. Nielsen E, Cheung AY, Ueda T. The regulatory RAB and ARF GTPases for vesicular trafficking. Plant Physiol 2008; 147:1516-1526; PMID:18678743; http://dx.doi.org/10.1104/pp.108.121798
7. Pereira-Leal JB, Seabra MC. The mammalian Rab family of small GTPases: definition of family and subfamily sequence motifs suggests a mechanism for functional specificity in the Ras superfamily. J Mol Biol 2000; 301:1077-1087; PMID:10966806; http://dx.doi.org/10.1006/jmbi.2000.4010
8. Saito-Nakano Y, Loftus BJ, Hall N, Nozaki T. The diversity of Rab GTPases in Entamoeba histolytica. Exp Parasitol 2005; 110:244-252; PMID:15955319; http://dx.doi.org/10.1016/j.exppara.2005.02.021
9. Saito-Nakano Y, Nakahara T, Nakano K, Nozaki T, Numata O. Marked amplification and diversification of products of ras genes from rat brain, Rab GTPases, in the ciliates Tetrahymena thermophila and Paramecium tetraurelia. J Eukaryot Microbiol 2010; 57:389-399; PMID:20738463; http://dx.doi.org/10.1111/j.1550-7408.2010.00503.x
10. Ueda T, Yamaguchi M, Uchimiya H, Nakano A. Ara6, a plant-unique novel type Rab GTPase, functions in the endocytic pathway of Arabidopsis thaliana. EMBO J 2001; 20:4730-4741; PMID:11532937; http://dx.doi.org/10.1093/emboj/20.17.4730
11. Goh T, Uchida W, Arakawa S, Ito E, Dainobu T, Ebine K, et al. VPS9a, the common activator for two distinct types of Rab5 GTPases, is essential for the development of Arabidopsis thaliana. Plant Cell 2007; 19:3504-3515; PMID:18055610; http://dx.doi.org/10.1105/tpc.107.053876
12. Haas TJ, Sliwinski MK, Martinez DE, Preuss M, Ebine K, Ueda T, et al. The Arabidopsis AAA ATPase SKD1 is involved in multivesicular endosome function and interacts with its positive regulator LYSTINTERACTING PROTEIN5. Plant Cell 2007; 19:1295-1312; PMID:17468262; http://dx.doi.org/10.1105/tpc.106.049346
13. Ueda T, Uemura T, Sato MH, Nakano A. Functional differentiation of endosomes in Arabidopsis cells. Plant J 2004; 40:783-789; PMID:15546360; http://dx.doi.org/10.1111/j.1365-313X.2004.02249.x
14. Dhonukshe P, Baluska F, Schlicht M, Hlavacka A, Samaj J, Friml J, et al. Endocytosis of cell surface material mediates cell plate formation during plant cytokinesis. Dev Cell 2006; 10:137-150; PMID:16399085; http://dx.doi.org/10.1016/j.devcel.2005.11.015
15. Kotzer AM, Brandizzi F, Neumann U, Paris N, Moore I, Hawes C. AtRabF2b (Ara7) acts on the vacuolar trafficking pathway in tobacco leaf epidermal cells. J Cell Sci 2004; 117:6377-6389; PMID:15561767; http://dx.doi.org/10.1242/jcs.01564
16. Sohn EJ, Kim ES, Zhao M, Kim SJ, Kim H, Kim YW, et al. Rha1, an Arabidopsis Rab5 homolog, plays a critical role in the vacuolar trafficking of soluble cargo proteins. Plant Cell 2003; 15:1057-1070; PMID: 12724533; http://dx.doi.org/10.1105/tpc.009779
17. Bolte S, Brown S, Satiat-Jeunemaitre B. The N-myristoylated Rab-GTPase m-Rabmc is involved in post-Golgi trafficking events to the lytic vacuole in plant cells. J Cell Sci 2004; 117:943-954; PMID:14762108; http://dx.doi.org/10.1242/jcs.00920
18. Sanderfoot A. Increases in the number of SNARE genes parallels the rise of multicellularity among the green plants. Plant Physiol 2007; 144:6-17; PMID: 17369437; http://dx.doi.org/10.1104/pp.106.092973
19. Uemura T, Ueda T, Ohniwa RL, Nakano A, Takeyasu K, Sato MH. Systematic analysis of SNARE molecules in Arabidopsis: dissection of the post-Golgi network in plant cells. Cell Struct Funct 2004; 29:49-65; PMID:15342965; http://dx.doi.org/10.1247/csf.29.49
20. Ebine K, Okatani Y, Uemura T, Goh T, Shoda K, Niihama M, et al. A SNARE complex unique to seed plants is required for protein storage vacuole biogenesis and seed development of Arabidopsis thaliana. Plant Cell 2008; 20:3006-3021; PMID:18984676; http://dx.doi.org/10.1105/tpc.107.057711
21. Bolte S, Schiene K, Dietz KJ. Characterization of a small GTP-binding protein of the rab 5 family in Mesembryanthemum crystallinum with increased level of expression during early salt stress. Plant Mol Biol 2000; 42:923-936; PMID:10890538; http://dx.doi.org/10.1023/A:1006449715236
22. Zhang L, Tian LH, Zhao JF, Song Y, Zhang CJ, Guo Y. Identification of an apoplastic protein involved in the initial phase of salt stress response in rice root by two-dimensional electrophoresis. Plant Physiol 2009; 149:916-928; PMID:19036832; http://dx.doi.org/10.1104/pp.108.131144
23. Ebine K, Fujimoto M, Okatani Y, Nishiyama T, Goh T, Ito E, et al. A membrane trafficking pathway regulated by the plant-specific RAB GTPase ARA6. Nat Cell Biol 2011; 13:853-859; PMID:21666683; http://dx.doi.org/10.1038/ncb2270
24. Shi H, Ishitani M, Kim C, Zhu JK. The Arabidopsis thaliana salt tolerance gene SOS1 encodes a putative Na+/H+ antiporter. Proc Natl Acad Sci USA 2000; 97:6896-6901; PMID:10823923; http://dx.doi.org/10.1073/pnas.120170197
25. Shi H, Quintero FJ, Pardo JM, Zhu JK. The putative plasma membrane Na(+)/H(+) antiporter SOS1 controls long-distance Na(+) transport in plants. Plant Cell 2002; 14:465-477; PMID:11884687; http://dx.doi.org/10.1105/tpc.010371
26. Zhu J, Lee BH, Dellinger M, Cui X, Zhang C, Wu S, et al. A cellulose synthase-like protein is required for osmotic stress tolerance in Arabidopsis. Plant J 2010; 63:128-140; PMID:20409003
27. Honsbein A, Sokolovski S, Grefen C, Campanoni P, Pratelli R, Paneque M, et al. A tripartite SNARE-K+ channel complex mediates in channel-dependent K+ nutrition in Arabidopsis. Plant Cell 2009; 21:2859-2877; PMID:19794113; http://dx.doi.org/10.1105/tpc.109.066118
28. Grefen C, Chen Z, Honsbein A, Donald N, Hills A, Blatt MR. A novel motif essential for SNARE interaction with the K(+) channel KC1 and channel gating in Arabidopsis. Plant Cell 2010; 22:3076-3092; PMID: 20884800; http://dx.doi.org/10.1105/tpc.110.077768
29. Grefen C, Honsbein A, Blatt MR. Ion transport, membrane traffic and cellular volume control. Curr Opin Plant Biol 2011; 14:332-339; PMID:21507708; http://dx.doi.org/10.1016/j.pbi.2011.03.017
30. Lakkaraju A, Rodriguez-Boulan E. Itinerant exosomes: emerging roles in cell and tissue polarity. Trends Cell Biol 2008; 18:199-209; PMID:18396047; http://dx.doi.org/10.1016/j.tcb.2008.03.002