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Volumn 21, Issue 4, 2012, Pages 1863-1873

Multiview deblurring for 3-D images from light-Sheet-based fluorescence microscopy

Author keywords

3 D images; Deblurring with spatially variant point spread function (PSF); deconvolution; fluorescence microscopy; L1 regularization; PSF estimation; registration with irregularly placed point markers; tomography

Indexed keywords

3-D IMAGE; DEBLURRING; L1-REGULARIZATION; PSF ESTIMATION; REGISTRATION WITH IRREGULARLY PLACED POINT MARKERS;

EID: 84859027565     PISSN: 10577149     EISSN: None     Source Type: Journal    
DOI: 10.1109/TIP.2011.2181528     Document Type: Article
Times cited : (51)

References (41)
  • 1
    • 4043090758 scopus 로고    scopus 로고
    • Optical sectioning deep inside live embryos by selective plane illumination microscopy
    • DOI 10.1126/science.1100035
    • J. Huisken, J. Swoger, F. D. Bene, J. Wittbrodt, and E. H. K. Stelzer, "Optical sectioning deep inside live embryos by selective plane illumination microscopy," Science, vol. 305, no. 5686, pp. 1007-1009, Aug. 2004. (Pubitemid 39071776)
    • (2004) Science , vol.305 , Issue.5686 , pp. 1007-1009
    • Huisken, J.1    Swoger, J.2    Del Bene, F.3    Wittbrodt, J.4    Stelzer, E.H.K.5
  • 2
    • 41849087358 scopus 로고    scopus 로고
    • A fast thresholded landweber algorithm for wavelet-regularized multidimensional deconvolution
    • DOI 10.1109/TIP.2008.917103
    • C. Vonesch andM. Unser, "A fast thresholded landweber algorithm for wavelet-regularized multidimensional deconvolution," IEEE Trans. Image Process., vol. 17, no. 4, pp. 539-549, Apr. 2008. (Pubitemid 351493877)
    • (2008) IEEE Transactions on Image Processing , vol.17 , Issue.4 , pp. 539-549
    • Vonesch, C.1    Unser, M.2
  • 3
    • 84883846117 scopus 로고    scopus 로고
    • A new and general method for blind shift-variant deconvolution of biomedical images
    • Oct.
    • M. Blume, D. Zikic, W. Wein, and N. Navab, "A new and general method for blind shift-variant deconvolution of biomedical images," Proc. MICCAI Oct. 2007, pp. 743-750.
    • (2007) Proc. Miccai , pp. 743-750
    • Blume, M.1    Zikic, D.2    Wein, W.3    Navab, N.4
  • 6
    • 0041426516 scopus 로고    scopus 로고
    • Multichannel blind iterative image restoration
    • Sep.
    • F. Sroubek and J. Flusser, "Multichannel blind iterative image restoration," IEEE Trans. Image Process., vol. 12, no. 9, pp. 1094-1106, Sep. 2003.
    • (2003) IEEE Trans. Image Process. , vol.12 , Issue.9 , pp. 1094-1106
    • Sroubek, F.1    Flusser, J.2
  • 7
    • 79551679510 scopus 로고    scopus 로고
    • Classification-based adaptive filtering for multiframe blind image restoration
    • Feb.
    • A. Giannoula, "Classification-based adaptive filtering for multiframe blind image restoration," IEEE Trans. Image Process., vol. 20, no. 2, pp. 382-390, Feb. 2011.
    • (2011) IEEE Trans. Image Process. , vol.20 , Issue.2 , pp. 382-390
    • Giannoula, A.1
  • 8
    • 80055062627 scopus 로고    scopus 로고
    • Multiple-view microscopy with light-sheet based fluorescence microscope
    • Ph.D. dissertation Heidelberg, Heidelberg, Germany
    • U. Krzic, "Multiple-view microscopy with light-sheet based fluorescence microscope," Ph.D. dissertation, Rupert-Carola Univ. Heidelberg, Heidelberg, Germany, 2009.
    • (2009) Rupert-Carola Univ.
    • Krzic, U.1
  • 9
    • 77952987028 scopus 로고    scopus 로고
    • Software for bead-based registration of selective plane illumination microscopy data
    • Jun.
    • S. Preibisch, S. Saalfeld, J. Schindelin, and P. Tomancak, "Software for bead-based registration of selective plane illumination microscopy data," Nat. Methods, vol. 7, no. 6, pp. 418-419, Jun. 2010.
    • (2010) Nat. Methods , vol.7 , Issue.6 , pp. 418-419
    • Preibisch, S.1    Saalfeld, S.2    Schindelin, J.3    Tomancak, P.4
  • 10
    • 78149490782 scopus 로고    scopus 로고
    • Evaluation of a new point clouds registration method based on group averaging features
    • M. Temerinac-Ott, M. Keuper, and H. Burkhardt, "Evaluation of a new point clouds registration method based on group averaging features," in Proc. IEEE Int. Conf. Pattern Recognit., 2010, pp. 2452-2455.
    • (2010) Proc. IEEE Int. Conf. Pattern Recognit. , pp. 2452-2455
    • Temerinac-Ott, M.1    Keuper, M.2    Burkhardt, H.3
  • 12
    • 0000847697 scopus 로고    scopus 로고
    • Linear and nonlinear image deblurring: A documented study
    • PII S0036142997320413
    • A. S. Carasso, "Linear and nonlinear image deblurring: A documented study," SIAM J. Numer. Anal., vol. 36, no. 6, pp. 1659-1689, Dec. 1999. (Pubitemid 129568029)
    • (1999) SIAM Journal on Numerical Analysis , vol.36 , Issue.6 , pp. 1659-1689
    • Carasso, A.S.1
  • 15
    • 0001050714 scopus 로고
    • An iterative technique for the rectification of observed distributions
    • Jun.
    • L. B. Lucy, "An iterative technique for the rectification of observed distributions," Astron. J., vol. 79, no. 6, pp. 745-754, Jun. 1974.
    • (1974) Astron. J. , vol.79 , Issue.6 , pp. 745-754
    • Lucy, L.B.1
  • 16
    • 0002594849 scopus 로고
    • Bayesian-based iterative method of image restoration
    • Jan.
    • W. H. Richardson, "Bayesian-based iterative method of image restoration," J. Opt. Soc. Amer., vol. 62, no. 1, pp. 55-59, Jan. 1972.
    • (1972) J. Opt. Soc. Amer. , vol.62 , Issue.1 , pp. 55-59
    • Richardson, W.H.1
  • 17
    • 0030840186 scopus 로고    scopus 로고
    • Noise analysis of MAP-EM algorithms for emission tomography
    • DOI 10.1088/0031-9155/42/11/015, PII S0031915597833453
    • W. Wang and G. Gindi, "Noise analysis of MAP-EM algorithms for emission tomography," Phys. Med. Biol., vol. 42, no. 11, pp. 2215-2232, Nov. 1997. (Pubitemid 27512539)
    • (1997) Physics in Medicine and Biology , vol.42 , Issue.11 , pp. 2215-2232
    • Wang, W.1    Gindi, G.2
  • 18
    • 34247882949 scopus 로고    scopus 로고
    • High-resolution three-dimensional imaging of large specimens with light sheet-based microscopy
    • DOI 10.1038/nmeth1017, PII NMETH1017
    • P. J. Verveer, J. Swoger, F. Pampaloni, K. Greger, M. Marcello, and E. H. K. Stelzer, "High-resolution tree-dimensional imaging of large specimens with light sheet-based microscopy," Nat. Methods, vol. 4, no. 4, pp. 311-313, Apr. 2007. (Pubitemid 46766973)
    • (2007) Nature Methods , vol.4 , Issue.4 , pp. 311-313
    • Verveer, P.J.1    Swoger, J.2    Pampaloni, F.3    Greger, K.4    Marcello, M.5    Stelzer, E.H.K.6
  • 19
    • 33645901226 scopus 로고    scopus 로고
    • Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution
    • Apr.
    • N. Dey, L. Blanc-Fraud, C. Zimmer, Z. Kam, P. Roux, J. Olivo-Marin, and J. Zerubia, "Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution," Microsc. Res. Tech., vol. 69, no. 4, pp. 260-266, Apr. 2006.
    • (2006) Microsc. Res. Tech. , vol.69 , Issue.4 , pp. 260-266
    • Dey, N.1    Blanc-Fraud, L.2    Zimmer, C.3    Kam, Z.4    Roux, P.5    Olivo-Marin, J.6    Zerubia, J.7
  • 20
    • 0018306059 scopus 로고
    • THRESHOLD SELECTION METHOD from GRAY-LEVEL HISTOGRAMS.
    • N. Otsu, "A threshold selection method from gray-level histograms," IEEE Trans. Syst. Man Cybern., vol. SMC-9, no. 1, pp. 62-66, Jan. 1979. (Pubitemid 9413341)
    • (1979) IEEE Trans Syst Man Cybern , vol.SMC-9 , Issue.1 , pp. 62-66
    • Nobuyuki, O.1
  • 21
    • 0002163712 scopus 로고    scopus 로고
    • Invariant features in pattern recognition- Fundamentals and applications
    • C. Kotropoulos and I. Pitas, Eds. New York: Wiley
    • H. Burkhardt and S. Siggelkow, "Invariant features in pattern recognition- Fundamentals and applications," in Nonlinear Model-Based Image/Video Processing and Analysis, C. Kotropoulos and I. Pitas, Eds. New York: Wiley, 2001, pp. 269-307.
    • (2001) Nonlinear Model-Based Image/Video Processing and Analysis , pp. 269-307
    • Burkhardt, H.1    Siggelkow, S.2
  • 22
    • 34547340385 scopus 로고    scopus 로고
    • Invariant features for searching in protein fold databases
    • DOI 10.1080/00207160701351937, PII 780342112, Bioinformatics
    • M. Temerinac, M. Reisert, and H. Burkhardt, "Invariant features for searching in protein fold databases," Int. J. Comput. Math., vol. 84, no. 5, pp. 635-651, May 2007. (Pubitemid 47147641)
    • (2007) International Journal of Computer Mathematics , vol.84 , Issue.5 , pp. 635-651
    • Temerinac, M.1    Reisert, M.2    Burkhardt, H.3
  • 23
    • 0019574599 scopus 로고
    • Random sample consensus: A paradigm for model fitting with applications to image analysis and automated cartography
    • Jun.
    • M. A. Fischler and R. C. Bolles, "Random sample consensus: A paradigm for model fitting with applications to image analysis and automated cartography," Commun. ACM, vol. 24, no. 6, pp. 381-395, Jun. 1981.
    • (1981) Commun. ACM , vol.24 , Issue.6 , pp. 381-395
    • Fischler, M.A.1    Bolles, R.C.2
  • 24
    • 84975553202 scopus 로고
    • Closed-form solution of absolute orientation using unit quaternions
    • Apr.
    • B. K. Horn, "Closed-form solution of absolute orientation using unit quaternions," J. Opt. Soc. Amer. A, vol. 4, no. 4, pp. 629-642, Apr. 1987.
    • (1987) J. Opt. Soc. Amer. A , vol.4 , Issue.4 , pp. 629-642
    • Horn, B.K.1
  • 25
    • 0037328027 scopus 로고    scopus 로고
    • Precise 3D image alignment in micro-axial tomography
    • DOI 10.1046/j.1365-2818.2003.01104.x
    • P. Matula, M. Kozubek, F. Staier, and M. Hausmann, "Precise 3D image alignment in micro-axial tomography," J. Microsc., vol. 209, no. Pt 2, pp. 126-142, Feb. 2003. (Pubitemid 36254699)
    • (2003) Journal of Microscopy , vol.209 , Issue.2 , pp. 126-142
    • Matula, P.1    Kozubek, M.2    Staier, F.3    Hausmann, M.4
  • 26
    • 0026821209 scopus 로고
    • A method for registration of 3-d shapes
    • Feb.
    • P. J. Besl and N. D.McKay, "A method for registration of 3-d shapes," IEEE Trans. Pattern Anal. Mach. Intell., vol. 14, no. 2, pp. 239-256, Feb. 1992.
    • (1992) IEEE Trans. Pattern Anal. Mach. Intell. , vol.14 , Issue.2 , pp. 239-256
    • Besl, P.J.1    McKay, N.D.2
  • 27
    • 78049529743 scopus 로고    scopus 로고
    • Blind image deconvolution using machine learning for three- dimensionalmicroscopy
    • Dec.
    • T. Kenig, Z. Kam, and A. Feuer, "Blind image deconvolution using machine learning for three-dimensionalmicroscopy," IEEE Trans. Pattern Anal. Mach. Intell., vol. 32, no. 12, pp. 2191-2204, Dec. 2010.
    • (2010) IEEE Trans. Pattern Anal. Mach. Intell. , vol.32 , Issue.12 , pp. 2191-2204
    • Kenig, T.1    Kam, Z.2    Feuer, A.3
  • 28
    • 0345412725 scopus 로고    scopus 로고
    • Image-Adaptive Deconvolution for Three-Dimensional Deep Biological Imaging
    • J. B. de Monvel, E. Scarfone, S. L. Calvez, and M. Ulfendahl, "Image-adaptive deconvolution for three-dimensional deep biological imaging," Biophys. J., vol. 85, no. 6, pp. 3991-4001, Dec. 2003. (Pubitemid 37490308)
    • (2003) Biophysical Journal , vol.85 , Issue.6 , pp. 3991-4001
    • De Monvel, J.B.1    Scarfone, E.2    Le Calvez, S.3    Ulfendahl, M.4
  • 30
    • 4544308033 scopus 로고    scopus 로고
    • Depth-variant maximum-likelihood restoration for three-dimensional fluorescence microscopy
    • Sep.
    • C. Preza and J. Conchello, "Depth-variant maximum-likelihood restoration for three-dimensional fluorescence microscopy," J. Opt. Soc. Amer. A, vol. 21, no. 9, pp. 1593-1601, Sep. 2004.
    • (2004) J. Opt. Soc. Amer. A , vol.21 , Issue.9 , pp. 1593-1601
    • Preza, C.1    Conchello, J.2
  • 31
    • 0024681039 scopus 로고
    • A generalized EMalgorithm for 3D Bayesian reconstruction from Poisson data using Gibbs priors
    • Jun.
    • T. Hebert and R. Leahy, "A generalized EMalgorithm for 3D Bayesian reconstruction from Poisson data using Gibbs priors," IEEE Trans. Med. Imag., vol. 8, no. 2, pp. 194-202, Jun. 1989.
    • (1989) IEEE Trans. Med. Imag. , vol.8 , Issue.2 , pp. 194-202
    • Hebert, T.1    Leahy, R.2
  • 32
    • 0000357775 scopus 로고
    • On use of the em for penalized likelihood estimation
    • P. J. Green, "On use of the EM for penalized likelihood estimation," J. R. Stat. Soc. Ser. B Stat. Methodol., vol. 52, no. 3, pp. 443-452, 1990.
    • (1990) J. R. Stat. Soc. Ser. B Stat. Methodol. , vol.52 , Issue.3 , pp. 443-452
    • Green, P.J.1
  • 33
    • 84859013628 scopus 로고    scopus 로고
    • 3d microscopy deconvolution using richardson-lucy algorithm with total variation regularization inria, st
    • Tech. Rep
    • N. Dey, L. Blanc-Feraud, C. Zimmer, P. Roux, Z. Kam, J.-C. Olivio-Marin, and J. Zerubia, 3D microscopy deconvolution using Richardson-Lucy algorithm with total variation regularization INRIA, St. Ismier, France, 2004, Tech. Rep.
    • (2004) Ismier, France
    • Dey, N.1    Blanc-Feraud, L.2    Zimmer, C.3    Roux, P.4    Kam, Z.5    Olivio-Marin, J.-C.6    Zerubia, J.7
  • 35
    • 84859046268 scopus 로고    scopus 로고
    • Multiview deblurring for 3D images from light sheet based fluorescence microscopy-Supporting online material Univ
    • Freibrug, Freibrug im Breisgau, Germany
    • M. Temerinac-Ott, O. Ronneberger, P. Ochs, W. Driever, T. Brox, and H. Burkhardt, Multiview deblurring for 3D images from light sheet based fluorescence microscopy-Supporting online material Univ. Freibrug, Freibrug im Breisgau, Germany, Tech. Rep. 266, 2011.
    • (2011) Tech. Rep. , vol.266
    • Temerinac-Ott, M.1    Ronneberger, O.2    Ochs, P.3    Driever, W.4    Brox, T.5    Burkhardt, H.6
  • 36
    • 71649090799 scopus 로고    scopus 로고
    • Multiview microscopy and multibeam manipulation for highresolution optical imaging
    • Univ.Freiburg, Freibrug im Breisgau, Germany Aug.
    • J. Huisken, "Multiview microscopy and multibeam manipulation for highresolution optical imaging," Ph.D. dissertation, Univ. Freiburg, Freibrug im Breisgau, Germany, Aug. 2004.
    • (2004) Ph.D. Dissertation
    • Huisken, J.1
  • 37
    • 84859084388 scopus 로고    scopus 로고
    • Available:Registration visited Mar. 8
    • S. Preibisch, [Online]. Available: http://pacific.mpi-cbg.de/wiki/index. php/SPIM-Registration visited Mar. 8, 2011
    • (2011) Online
    • Preibisch, S.1
  • 38
    • 38449091551 scopus 로고    scopus 로고
    • Even fluorescence excitation by multidirectional selective plane illumination microscopy (mSPIM)
    • DOI 10.1364/OL.32.002608
    • J. Huisken and D. Stainier, "Even fluorescence excitation by multidirectional selective plane illumination microscopy (MSPIM)," Opt. Lett., vol. 32, no. 17, pp. 2608-2610, Aug. 2007. (Pubitemid 351303001)
    • (2007) Optics Letters , vol.32 , Issue.17 , pp. 2608-2610
    • Huisken, J.1    Stainier, D.Y.R.2
  • 39
    • 77955172060 scopus 로고    scopus 로고
    • Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy
    • Aug.
    • P. J. Keller, A. D. Schmidt, A. Santella, K. Khairy, Z. Bao, J. Wittbrodt, and E. H. K. Stelzer, "Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy," Nat. Meth., vol. 7, no. 8, pp. 637-642, Aug. 2010.
    • (2010) Nat. Meth. , vol.7 , Issue.8 , pp. 637-642
    • Keller, P.J.1    Schmidt, A.D.2    Santella, A.3    Khairy, K.4    Bao, Z.5    Wittbrodt, J.6    Stelzer, E.H.K.7
  • 40
    • 79955586247 scopus 로고    scopus 로고
    • Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination
    • May
    • T.A. Planchon, L. Gao, D. E. Milkie, Davidson M.W., Galbraith J.A., C. G. Galbraith, and E. Betzig, "Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination," Nat. Meth., vol. 8, no. 5, pp. 417-423, May 2011.
    • (2011) Nat. Meth. , vol.8 , Issue.5 , pp. 417-423
    • Planchon, T.A.1    Gao, L.2    Milkie, D.E.3    Davidson, M.W.4    Galbraith, J.A.5    Galbraith, C.G.6    Betzig, E.7
  • 41
    • 80052298394 scopus 로고    scopus 로고
    • Deep and fast live imaging with two-photon scanned light-sheet microscopy
    • Jul.
    • T. V. Truong, W. Supatto, D. S. Koos, J. M. Choi, and S. E. Fraser, "Deep and fast live imaging with two-photon scanned light-sheet microscopy," Nat. Meth., vol. 8, no. 9, pp. 757-760, Jul. 2011.
    • (2011) Nat. Meth. , vol.8 , Issue.9 , pp. 757-760
    • Truong, T.V.1    Supatto, W.2    Koos, D.S.3    Choi, J.M.4    Fraser, S.E.5


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