-
1
-
-
55849100058
-
Network model of survival signaling in large granular lymphocyte leukemia
-
Zhang, R., Shah, M. V., Yang, J., Nyland, S. B., Liu, X., Yun, J. K., Albert, R. and Loughran, T. P., Jr. Network model of survival signaling in large granular lymphocyte leukemia. Proc Natl Acad Sci U S A, 105, 42 (2008), 16308-16313.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, Issue.42
, pp. 16308-16313
-
-
Zhang, R.1
Shah, M.V.2
Yang, J.3
Nyland, S.B.4
Liu, X.5
Yun, J.K.6
Albert, R.7
Loughran Jr., T.P.8
-
2
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie, D. T. Exact stochastic simulation of coupled chemical reactions. The Journal of Physical Chemistry, 81, 25 (1977), 2340-2361.
-
(1977)
The Journal of Physical Chemistry
, vol.81
, Issue.25
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
3
-
-
4444349425
-
A model for restriction point control of the mammalian cell cycle
-
DOI 10.1016/j.jtbi.2004.04.039, PII S0022519304002449
-
Novak, M. and Tyson, J. J. A model for restriction point control of the mammalian cell cycle. Journal of Theoretical Biology, 230, 4 (2004), 563-579. (Pubitemid 39195088)
-
(2004)
Journal of Theoretical Biology
, vol.230
, Issue.4 SPEC. ISSUE
, pp. 563-579
-
-
Novak, B.1
Tyson, J.J.2
-
4
-
-
65649154507
-
Rule-based modeling of biochemical systems with BioNetGen
-
Faeder, J. R., Blinov, M. L. and Hlavacek, W. S. Rule-based modeling of biochemical systems with BioNetGen. Methods Mol Biol, 500(2009), 113-167.
-
(2009)
Methods Mol Biol
, vol.500
, pp. 113-167
-
-
Faeder, J.R.1
Blinov, M.L.2
Hlavacek, W.S.3
-
5
-
-
58049164511
-
Boolean network simulations for life scientists
-
Albert, I., Thakar, J., Li, S., Zhang, R. and Albert, R. Boolean network simulations for life scientists. Source Code Biol Med, 3(2008), 16.
-
(2008)
Source Code Biol Med
, vol.3
, pp. 16
-
-
Albert, I.1
Thakar, J.2
Li, S.3
Zhang, R.4
Albert, R.5
-
6
-
-
71449120701
-
Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction
-
Saez-Rodriguez, J., Alexopoulos, L. G., Epperlein, J., Samaga, R., Lauffenburger, D. A., Klamt, S. and Sorger, P. K. Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction. Mol Syst Biol, 5(2009), -.
-
(2009)
Mol Syst Biol
, vol.5
-
-
Saez-Rodriguez, J.1
Alexopoulos, L.G.2
Epperlein, J.3
Samaga, R.4
Lauffenburger, D.A.5
Klamt, S.6
Sorger, P.K.7
-
7
-
-
46249112705
-
Boolean network models of cellular regulation: Prospects and limitations
-
DOI 10.1098/rsif.2008.0132.focus, PII 9K3H4W04MKV8382X
-
Bornholdt, S. Boolean network models of cellular regulation: prospects and limitations. Journal of the Royal Society Interface, 5(2008), S85-S94. (Pubitemid 351915287)
-
(2008)
Journal of the Royal Society Interface
, vol.5
, Issue.SUPPL. 1
-
-
Bornholdt, S.1
-
8
-
-
0029267491
-
Dynamical behaviour of biological regulatory networks-I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state
-
Thomas, R., Thieffry, D. and Kaufman, M. Dynamical behaviour of biological regulatory networks-I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state. Bull Math Biol, 57, 2 (1995), 247-276.
-
(1995)
Bull Math Biol
, vol.57
, Issue.2
, pp. 247-276
-
-
Thomas, R.1
Thieffry, D.2
Kaufman, M.3
-
9
-
-
0014489272
-
Metabolic stability and epigenesis in randomly constructed genetic nets
-
Kauffman, S. A. Metabolic stability and epigenesis in randomly constructed genetic nets. J Theor Biol, 22, 3 (1969), 437-467.
-
(1969)
J Theor Biol
, vol.22
, Issue.3
, pp. 437-467
-
-
Kauffman, S.A.1
-
10
-
-
0037686112
-
The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster
-
DOI 10.1016/S0022-5193(03)00035-3
-
Albert, R. and Othmer, H. G. The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster. J Theor Biol, 223, 1 (2003), 1-18. (Pubitemid 36627542)
-
(2003)
Journal of Theoretical Biology
, vol.223
, Issue.1
, pp. 1-18
-
-
Albert, R.1
Othmer, H.G.2
-
11
-
-
45849093636
-
Boolean network model predicts cell cycle sequence of fission yeast
-
Davidich, M. I. and Bornholdt, S. Boolean Network Model Predicts Cell Cycle Sequence of Fission Yeast. PLoS One, 3, 2 (2008), -.
-
(2008)
PLoS One
, vol.3
, pp. 2
-
-
Davidich, M.I.1
Bornholdt, S.2
-
12
-
-
0035928464
-
A logical analysis of the Drosophila gapgene system
-
Sanchez, L. and Thieffry, D. A logical analysis of the Drosophila gapgene system. Journal of Theoretical Biology, 211, 2 (2001), 115-+.
-
(2001)
Journal of Theoretical Biology
, vol.211
, Issue.2
, pp. 115
-
-
Sanchez, L.1
Thieffry, D.2
-
13
-
-
3543021471
-
In silico simulation of biological network dynamics
-
DOI 10.1038/nbt991
-
Salwinski, L. and Eisenberg, D. In silico simulation of biological network dynamics. Nature Biotechnology, 22, 8 (2004), 1017-1019. (Pubitemid 39014480)
-
(2004)
Nature Biotechnology
, vol.22
, Issue.8
, pp. 1017-1019
-
-
Salwinski, L.1
Eisenberg, D.2
-
15
-
-
84858961042
-
-
City
-
Yoshiini, M., Iwaoka, Y., Nishikawa, Y., Kojima, T., Osana, Y., Shibata, Y., Iwanaga, N., Yamada, H., Kitano, H., Funahashi, A., Hiroi, N. and Amano, H. FPGA Implementation of a Data-Driven Stochastic Biochemical Simulator with the Next Reaction Method. City, 2007.
-
(2007)
FPGA Implementation of A Data-Driven Stochastic Biochemical Simulator with the Next Reaction Method
-
-
Yoshiini, M.1
Iwaoka, Y.2
Nishikawa, Y.3
Kojima, T.4
Osana, Y.5
Shibata, Y.6
Iwanaga, N.7
Yamada, H.8
Kitano, H.9
Funahashi, A.10
Hiroi, N.11
Amano, H.12
-
16
-
-
50549088838
-
Synchronous versus asynchronous modeling of gene regulatory networks
-
Garg, A., Di Cara, A., Xenarios, I., Mendoza, L. and De Micheli, G. Synchronous versus asynchronous modeling of gene regulatory networks. Bioinformatics, 24, 17 (2008), 1917-1925.
-
(2008)
Bioinformatics
, vol.24
, Issue.17
, pp. 1917-1925
-
-
Garg, A.1
Di Cara, A.2
Xenarios, I.3
Mendoza, L.4
De Micheli, G.5
-
17
-
-
84858959286
-
ModelSim - Advanced simulation and debugging
-
ModelSim - Advanced Simulation and Debugging, Mentor Grpahics, http://model.com/.
-
Mentor Grpahics
-
-
-
20
-
-
35048900689
-
Symbolic model checking: States and beyond
-
Burch, J. R., Clarke, E. M., McMillan, K. L., Dill, D. L. and Hwang, L. J. Symbolic model checking: states and beyond. Inf. Comput., 98, 2 (1992), 142-170.
-
(1992)
Inf. Comput.
, vol.98
, Issue.2
, pp. 142-170
-
-
Burch, J.R.1
Clarke, E.M.2
McMillan, K.L.3
Dill, D.L.4
Hwang, L.J.5
-
21
-
-
33646345600
-
A network model for the control of the differentiation process in Th cells
-
DOI 10.1016/j.biosystems.2005.10.004, PII S030326470500170X
-
Mendoza, L. A network model for the control of the differentiation process in Th cells. Biosystems, 84, 2 (2006), 101-114. (Pubitemid 43670489)
-
(2006)
BioSystems
, vol.84
, Issue.2
, pp. 101-114
-
-
Mendoza, L.1
-
22
-
-
84858983116
-
-
Miskov-Zivanov, N., Turner, M., Morel, P. and Faeder, J., Title, 2011.
-
(2011)
Title
-
-
Miskov-Zivanov, N.1
Turner, M.2
Morel, P.3
Faeder, J.4
-
23
-
-
84858959288
-
-
XILINX, http://www.xilinx.com/.
-
-
-
|