Correlation of soil microbial community responses to contamination with crude oil with and without chromium and copper

International Biodeterioration and Biodegradation

Volumn 70, Issue , 2012, Pages 104-110

  dos Santos, Eder da C ^a   Silva, Isis S ^b   Simões, Tiago H N ^b   Simioni, Karen C M ^b   Oliveira, Valéria M ^b   Grossman, Matthew J ^b   Durrant, Lucia R ^b  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b UNIVERSITY OF CAMPINAS   (Brazil)

Author keywords

Chromium; Copper; Crude oil; Enzyme activities; Microbial communities; Soil contamination

Indexed keywords

16S RDNA; ACID PHOSPHATASE; ARYLSULFATASE; BIOCHEMICAL ACTIVITY; COMMUNITY STRUCTURES; CONTAMINATED SOILS; DENATURING GRADIENT GEL ELECTROPHORESES (DGGE); FINANCIAL RESOURCES; MICROBIAL COMMUNITIES; MICROBIAL COMMUNITY STRUCTURES; MICROBIAL POPULATIONS; MICROBIAL RESPIRATION; MICROBIAL RESPONSE; SOIL CONTAMINATION; SOIL ENZYME ACTIVITY; SOIL MICROBIAL COMMUNITY; SOIL MICROCOSMS; UNCONTAMINATED SOILS;

BIOREMEDIATION; CARBON DIOXIDE; CHROMIUM; CONTAMINATION; COPPER; CRUDE OIL; ELECTROPHORESIS; ENZYME ACTIVITY; HEAVY METALS; MICROORGANISMS; PHOSPHATASES; SOCIAL SCIENCES; SOILS;

SOIL POLLUTION;

BIOMASS; BIOREMEDIATION; CHROMIUM; COMMUNITY STRUCTURE; COPPER; CORRELATION; CRUDE OIL; ENZYME ACTIVITY; MICROBIAL COMMUNITY; RESPIRATION; SOIL MICROORGANISM; SOIL POLLUTION;

BACTERIA (MICROORGANISMS);

EID: 84858720937     PISSN: 09648305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibiod.2012.01.010     Document Type: Article

References (37)

1. Al-Saleh E.S., Obuekwe C. Inhibition of hydrocarbon bioremediation by lead in a crude oil-contaminated soil. International Biodeterioration and Biodegradation 2005, 56:1-7.
2. Alef K. Dehydrogenase activity. Methods in Applied Soil Microbiology and Biochemistry 1995, 228-231. Academic Press, London. K. Alef, P. Nannipieri (Eds.).
3. Allard A.S., Neilson A.H. Bioremediation of organic waste sites: a critical review of microbiological aspects. International Biodeterioration and Biodegradation 1997, 39:253-285.
4. Alvarenga P., et al. Assessment of chemical, biochemical and ecotoxicological aspects in a mine soil amended with sludge of either urban or industrial origin. Chemosphere 2008, 72:1774-1781.
5. Bergstrom D.W., et al. Sensitivity of soil enzyme activities to conservation practices. Soil Science Society of America Journal 1998, 62:1286-1295.
6. Chatterjee A., Lalitagauri R. Biosorption of Cu(II) by immobilized biomass of Bacillus cereus M116 from aqueous solution. Journal of Scientific & Industrial Research 2008, 67:629-634.
7. Chen L.M., Hao O.J. Microbial chromium(VI) reduction. Critical Reviews in Environmental Science and Technology 1998, 28:219-251.
8. Gianfreda L., Rao M.A. Interactions between xenobiotics and microbial and enzymatic soil activity. Critical Reviews in Environmental Science and Technology 2008, 38:269-310.
9. Grossman M.J., Prince R.C., Garrett R.M., Garrett K.K., Bare R.E., O'Neil K.R., Sowlay M.R., Hinton S.M., Lee K., Sergy G.A., Owens E.H., Guénette C.C. Microbial diversity in oiled and un-oiled shoreline sediments in the Norwegian Arctic. Proceedings of the Eighth International Symposium on Microbial Ecology, Halifax, Canada 2000, 775-788. Atlantic Canada Society for Microbial Ecology, Halifax. C.R. Bell, M. Brylinsky, P. Johnson-Green (Eds.).
10. Gülser F., Erdogan E. The effects of heavy metal pollution on enzyme activities and basal soil respiration of roadside soils. Environmental Monitoring and Assessment 2008, 145:127-133.
11. Heuer H., et al. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Applied and Environmental Microbiology 1997, 63:3233-3241.
12. Jeyasingh J., Philip L. Bioremediation of chromium contaminated soil: optimization of operating parameters under laboratory conditions. Journal of Hazardous Materials 2005, B118:113-120.
13. Lee S.H., et al. Lipase-catalyzed synthesis of glucose fatty acid ester using ionic liquids mixtures. Journal of Biotechnology 2008, 133:486-489.
14. Margesin R. Determination of enzyme activities in contaminated soil. Manual of Soil Analysis-Monitoring and Assessing Soil Bioremediation 2005, vol. 5:309-320. Springer Verlag, Berlin. R. Margesin, F. Schinner (Eds.).
15. Margesin R., Schinner F. Low-temperature bioremediation of a waste water contaminated with anionic surfactants and fuel oil. Applied Microbiology and Biotechnology 1998, 49:482-486.
16. Mielke H.W., Wang G., Gonzales C.R., Powell E.T., Le B., Quach V.N. PAHs and metals in. the soils of inner-city and suburban New Orleans, Louisiana, USA. Environmental Toxicology and Pharmacology 2005, 18:243-247.
17. Nakatsu C.H. Soil microbial community analysis using denaturing gradient gel electrophoresis. Soil Science Society of America Journal 2007, 71:562-571.
18. Nakatsu C.H., et al. Soil microbial community responses to additions of organic carbon substrates and heavy metals (Pb and Cr). Applied and Environmental Microbiology 2005, 71:7679-7689.
19. Nannipieri P., et al. Enzyme activity as monitors of soil microbial functional diversity. Enzymes in the Environment: Activity, Ecology and Applications 2002, 234-251. Marcel Dekker, New York. R.G. Burns, R. Dick (Eds.).
20. Pérez de Mora A., Ortega-Calvo J.J., Cabrera F., Madejón E. Changes in enzyme activities and microbial biomass after "in situ" remediation of a heavy metal-contaminated soil. Applied Soil Ecology 2005, 28:125-137.
21. Prince R.C., Bare R.E., Garrett R.M., Grossman M.J., Haith C.E., Keim L.G., Lee K., Holtom G.J., Lambert P., Sergy G.A., Owens E.H., Guénette C.C. Bioremediation of stranded oil on an Arctic Shoreline. Spill Science & Technology Bulletin 2003, 8:303-312.
22. Renella G., et al. Functional activity and microbial community structure in soils amended with bimetallic sludges. Soil Biology & Biochemistry 2005, 37:1498-1506.
23. Renella G., et al. Effects of Cd, Zn, or both on soil microbial biomass and activity in a clay loam soil. Biology and Fertility of Soils 2007, 43:751-758.
24. Riffaldi R., et al. Soil biological activities in monitoring the bioremediation of diesel oil-contaminated soil. Water, Air, and Soil Pollution 2006, 170:3-15.
25. 14C-phenanthrene in soil. Chemosphere 2004, 55:447-485.
26. Shen G.Q., et al. Interaction of polycyclic aromatic hydrocarbons and heavy metals on soil enzyme. Chemosphere 2005, 61:1175-1182.
27. Shi W., et al. Association of microbial community composition and activity with lead, chromium, and hydrocarbon contamination. Applied and Environmental Microbiology 2002, 68:3859-3866.
28. Sparling G.P. Soil microbial biomass, activity and nutrient cycling as indicators of soil health. Biological Indicators of Soil Health 1997, 97-120. CAB International, Cambridge. C. Pankhurst, B.M. Doube, V.V.S.R. Gupta (Eds.).
29. Trasar-Cepeda C., et al. Biochemical properties of acid soils under climax vegetation (Atlantic oakwood) in an area of the European temperate-humid zone (Galicia, NW Spain): specific parameters. Soil Biology & Biochemistry 2000, 32:747-755.
30. Trasar-Cepeda C., et al. Limitations of soil enzymes as indicators of soil pollution. Soil Biology & Biochemistry 2000, 32:1867-1875.
31. van Beelen P., Fleuren-Kemilä A.K. Influence of pH on the toxic effects of zinc, cadmium, and pentachlorophenol on pure cultures of soil microorganisms. Environmental Toxicology and Chemistry 1997, 16:146-153.
32. Vance E.D., et al. An extraction method for measuring soil microbial biomass-c. Soil Biology & Biochemistry 1987, 19:703-707.
33. van Elsas J.D., Smalla K. Extraction of microbial community DNA from soils. Molecular Microbial Ecology Manual 1995, 1-11. Kluwer Academic Publishers, Dordrecht, Netherlands. A.D. Akkerman, J.D. Van Elsas, F.J. Bruijn (Eds.).
34. Visser S., Parkinson D. Soil biological criteria as indicators of soil quality: soil microorganisms. American Journal of Alternative Agriculture 1992, 7:33-37.
35. Vivas A., Moreno B., del Val C., Macci C., Masciandaro G., Benitez E. Metabolic and bacterial diversity in soils historically contaminated by heavy metals and hydrocarbons. Journal of Environmental Monitoring 2008, 10:1287-1296.
36. Wang J.H., et al. Effect of cadmium alone and in combination with butachlor on soil enzymes. Environmental Geochemistry and Health 2007, 29:395-403.
37. Xue D., et al. Microbial biomass, N mineralization and nitrification, enzyme activities, and microbial community diversity in tea orchard soils. Plant and Soil 2006, 288:319-331.