-
3
-
-
0033958431
-
UvrD-dependent replication of rolling-circle plasmids in Escherichia coli
-
DOI 10.1046/j.1365-2958.2000.01700.x
-
Bruand C.; and Ehrlich S.D. UvrD-dependent replication of rolling-circle plasmids in Escherichia coli Mol. Microbiol. 35 2000 204 210 (Pubitemid 30032283)
-
(2000)
Molecular Microbiology
, vol.35
, Issue.1
, pp. 204-210
-
-
Bruand, C.1
Ehrlich, S.D.2
-
4
-
-
33749173326
-
The Escherichia coli UvrD helicase is essential for Tus removal during recombination-dependent replication restart from Ter sites
-
DOI 10.1111/j.1365-2958.2006.05382.x
-
Bidnenko V.; Lestini R.; and Michel B. The Escherichia coli UvrD helicase is essential for Tus removal during recombination-dependent replication restart from Ter sites Mol. Microbiol. 62 2006 382 396 (Pubitemid 44477229)
-
(2006)
Molecular Microbiology
, vol.62
, Issue.2
, pp. 382-396
-
-
Bidnenko, V.1
Lestini, R.2
Michel, B.3
-
5
-
-
13244252309
-
UvrD helicase, unlike Rep helicase, dismantles RecA nucleoprotein filaments in Escherichia coli
-
DOI 10.1038/sj.emboj.7600485
-
Veaute X.; Delmas S.; Selva M.; Jeusset J.; Le Cam E.; and Matic I. UvrD helicase, unlike Rep helicase, dismantles RecA nucleoprotein filaments in Escherichia coli EMBO J. 24 2005 180 189 (Pubitemid 40188475)
-
(2005)
EMBO Journal
, vol.24
, Issue.1
, pp. 180-189
-
-
Veaute, X.1
Delmas, S.2
Selva, M.3
Jeusset, J.4
Le Cam, E.5
Matic, I.6
Fabre, F.7
Petit, M.-A.8
-
6
-
-
25144500083
-
A fork-clearing role for UvrD
-
DOI 10.1111/j.1365-2958.2005.04753.x
-
Flores M.J.; Sanchez N.; and Michel B. A fork-clearing role for UvrD Mol. Microbiol. 57 2005 1664 1675 (Pubitemid 41337394)
-
(2005)
Molecular Microbiology
, vol.57
, Issue.6
, pp. 1664-1675
-
-
Flores, M.-J.1
Sanchez, N.2
Michel, B.3
-
7
-
-
8844265345
-
The DNA repair helicase UvrD is essential for replication fork reversal in replication mutants
-
DOI 10.1038/sj.embor.7400262
-
Flores M.J.; Bidnenko V.; and Michel B. The DNA repair helicase UvrD is essential for replication fork reversal in replication mutants EMBO Rep. 5 2004 983 988 (Pubitemid 39534456)
-
(2004)
EMBO Reports
, vol.5
, Issue.10
, pp. 983-988
-
-
Flores, M.J.1
Bidnenko, V.2
Michel, B.3
-
9
-
-
0037474547
-
A dimer of Escherichia coli UvrD is the active form of the helicase in vitro
-
DOI 10.1016/S0022-2836(02)01277-9
-
Maluf N.K.; Fischer C.J.; and Lohman T.M. A dimer of Escherichia coli UvrD is the active form of the helicase in vitro J. Mol. Biol. 325 2003 913 935 (Pubitemid 36263404)
-
(2003)
Journal of Molecular Biology
, vol.325
, Issue.5
, pp. 913-935
-
-
Maluf, N.K.1
Fischer, C.J.2
Lohman, T.M.3
-
10
-
-
9244235535
-
Mechanism of ATP-dependent translocation of E. coli UvrD monomers along single-stranded DNA
-
DOI 10.1016/j.jmb.2004.10.005, PII S0022283604012860
-
Fischer C.J.; Maluf N.K.; and Lohman T.M. Mechanism of ATP-dependent translocation of E. coli UvrD monomers along single-stranded DNA J. Mol. Biol. 344 2004 1287 1309 (Pubitemid 39550478)
-
(2004)
Journal of Molecular Biology
, vol.344
, Issue.5
, pp. 1287-1309
-
-
Fischer, C.J.1
Maluf, N.K.2
Lohman, T.M.3
-
12
-
-
34247602963
-
A Nonuniform Stepping Mechanism for E. coli UvrD Monomer Translocation along Single-Stranded DNA
-
DOI 10.1016/j.molcel.2007.03.024, PII S1097276507002158
-
Tomko E.J.; Fischer C.J.; Niedziela-Majka A.; and Lohman T.M. A nonuniform stepping mechanism for E. coli UvrD monomer translocation along single-stranded DNA Mol. Cell 26 2007 335 347 (Pubitemid 46687098)
-
(2007)
Molecular Cell
, vol.26
, Issue.3
, pp. 335-347
-
-
Tomko, E.J.1
Fischer, C.J.2
Niedziela-Majka, A.3
Lohman, T.M.4
-
13
-
-
9244237061
-
ATP-dependent translocation of proteins along single-stranded DNA: Models and methods of analysis of pre-steady state kinetics
-
DOI 10.1016/j.jmb.2004.10.004, PII S0022283604012859
-
Fischer C.J.; and Lohman T.M. ATP-dependent translocation of proteins along single-stranded DNA: models and methods of analysis of pre-steady state kinetics J. Mol. Biol. 344 2004 1265 1286 (Pubitemid 39550477)
-
(2004)
Journal of Molecular Biology
, vol.344
, Issue.5
, pp. 1265-1286
-
-
Fischer, C.J.1
Lohman, T.M.2
-
14
-
-
78449275796
-
5′-Single-stranded/duplex DNA junctions are loading sites for E. coli UvrD translocase
-
Tomko E.J.; Jia H.; Park J.; Maluf N.K.; Ha T.; and Lohman T.M. 5′-Single-stranded/duplex DNA junctions are loading sites for E. coli UvrD translocase EMBO J. 29 2010 3826 3839
-
(2010)
EMBO J.
, vol.29
, pp. 3826-3839
-
-
Tomko, E.J.1
Jia, H.2
Park, J.3
Maluf, N.K.4
Ha, T.5
Lohman, T.M.6
-
15
-
-
0037080166
-
Direct measurement of single-stranded DNA translocation by PcrA helicase using the fluorescent base analogue 2-aminopurine
-
DOI 10.1021/bi011137k
-
Dillingham M.S.; Wigley D.B.; and Webb M.R. Direct measurement of single-stranded DNA translocation by PcrA helicase using the fluorescent base analogue 2-aminopurine Biochemistry 41 2002 643 651 (Pubitemid 34062036)
-
(2002)
Biochemistry
, vol.41
, Issue.2
, pp. 643-651
-
-
Dillingham, M.S.1
Wigley, D.B.2
Webb, M.R.3
-
16
-
-
77954009806
-
Ensemble methods for monitoring enzyme translocation along single stranded nucleic acids
-
Tomko E.J.; Fischer C.J.; and Lohman T.M. Ensemble methods for monitoring enzyme translocation along single stranded nucleic acids Methods 51 2010 269 276
-
(2010)
Methods
, vol.51
, pp. 269-276
-
-
Tomko, E.J.1
Fischer, C.J.2
Lohman, T.M.3
-
17
-
-
0028098798
-
Direct, real-time measurement of rapid inorganic phosphate release using a novel fluorescent probe and its application to actomyosin subfragment 1 ATPase
-
DOI 10.1021/bi00193a013
-
Brune M.; Hunter J.L.; Corrie J.E.T.; and Webb M.R. Direct, real-time measurement of rapid inorganic phosphate release using a novel fluorescent probe and its application to actomyosin subfragment 1 ATPase Biochemistry 33 1994 8262 8271 (Pubitemid 24241060)
-
(1994)
Biochemistry
, vol.33
, Issue.27
, pp. 8262-8271
-
-
Brune, M.1
Hunter, J.L.2
Corrie, J.E.T.3
Webb, M.R.4
-
18
-
-
0034635172
-
Demonstration of unidirectional single-stranded DNA translocation by PcrA helicase: Measurement of step size and translocation speed
-
DOI 10.1021/bi992105o
-
Dillingham M.S.; Wigley D.B.; and Webb M.R. Demonstration of unidirectional single-stranded DNA translocation by PcrA helicase: measurement of step size and translocation speed Biochemistry 39 2000 205 212 (Pubitemid 30033335)
-
(2000)
Biochemistry
, vol.39
, Issue.1
, pp. 205-212
-
-
Dillingham, M.S.1
Wigley, D.B.2
Webb, M.R.3
-
19
-
-
66149143165
-
The origin of short transcriptional pauses
-
Depken M.; Galburt E.A.; and Grill S.W. The origin of short transcriptional pauses Biophys. J. 96 2009 2189 2193
-
(2009)
Biophys. J.
, vol.96
, pp. 2189-2193
-
-
Depken, M.1
Galburt, E.A.2
Grill, S.W.3
-
20
-
-
0141540814
-
A molecular throttle: The recombination hotspot χ controls DNA translocation by the RecBCD helicase
-
DOI 10.1016/S0092-8674(03)00681-0
-
Spies M.; Bianco P.R.; Dillingham M.S.; Handa N.; Baskin R.J.; and Kowalczykowski S.C. A molecular throttle: the recombination hotspot chi controls DNA translocation by the RecBCD helicase Cell 114 2003 647 654 (Pubitemid 37159260)
-
(2003)
Cell
, vol.114
, Issue.5
, pp. 647-654
-
-
Spies, M.1
Bianco, P.R.2
Dillingham, M.S.3
Handa, N.4
Baskin, R.J.5
Kowalczykowski, S.C.6
-
22
-
-
58049202845
-
Impediment of E. coli UvrD by DNA-destabilizing force reveals a strained-inchworm mechanism of DNA unwinding
-
Sun B.; Wei K.J.; Zhang B.; Zhang X.H.; Dou S.X.; Li M.; and Xi X.G. Impediment of E. coli UvrD by DNA-destabilizing force reveals a strained-inchworm mechanism of DNA unwinding EMBO J. 27 2008 3279 3287
-
(2008)
EMBO J.
, vol.27
, pp. 3279-3287
-
-
Sun, B.1
Wei, K.J.2
Zhang, B.3
Zhang, X.H.4
Dou, S.X.5
Li, M.6
Xi, X.G.7
-
23
-
-
0035905687
-
Processive tanslocation and DNA unwinding by individual RecBCD enzyme molecules
-
DOI 10.1038/35053131
-
Bianco P.R.; Brewer L.R.; Corzett M.; Balhorn R.; Yeh Y.; Kowalczykowski S.C.; and Baskin R.J. Processive translocation and DNA unwinding by individual RecBCD enzyme molecules Nature 409 2001 374 378 (Pubitemid 32151246)
-
(2001)
Nature
, vol.409
, Issue.6818
, pp. 374-378
-
-
Bianco, P.R.1
Brewer, L.R.2
Corzett, M.3
Balhorn, R.4
Yeh, Y.5
Kowalczykowski, S.C.6
Baskin, R.J.7
-
24
-
-
30144436268
-
RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP
-
DOI 10.1038/nature04331
-
Dumont S.; Cheng W.; Serebrov V.; Beran R.K.; Tinoco I. Jr.; Pyle A.M.; and Bustamante C. RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP Nature 439 2006 105 108 (Pubitemid 43053637)
-
(2006)
Nature
, vol.439
, Issue.7072
, pp. 105-108
-
-
Dumont, S.1
Cheng, W.2
Serebrov, V.3
Beran, R.K.4
Tinoco Jr., I.5
Pyle, A.M.6
Bustamante, C.7
-
26
-
-
0032484096
-
Single-molecule enzymatic dynamics
-
Lu H.P.; Xun L.; and Xie X.S. Single-molecule enzymatic dynamics Science 282 1998 1877 1882 (Pubitemid 28555264)
-
(1998)
Science
, vol.282
, Issue.5395
, pp. 1877-1882
-
-
Xie, X.S.1
-
27
-
-
0041821716
-
Single-molecule kinetics of λ exonuclease reveal base dependence and dynamic disorder
-
DOI 10.1126/science.1084387
-
van Oijen A.M.; Blainey P.C.; Crampton D.J.; Richardson C.C.; Ellenberger T.; and Xie X.S. Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder Science 301 2003 1235 1238 (Pubitemid 37052212)
-
(2003)
Science
, vol.301
, Issue.5637
, pp. 1235-1238
-
-
Van Oijen, A.M.1
Blainey, P.C.2
Crampton, D.J.3
Richardson, C.C.4
Ellenberger, T.5
Xie, X.S.6
-
28
-
-
0037119352
-
Helicase from hepatitis C virus, energetics of DNA binding
-
DOI 10.1074/jbc.M112315200
-
Levin M.K.; and Patel S.S. Helicase from hepatitis C virus, energetics of DNA binding J. Biol. Chem. 277 2002 29377 29385 (Pubitemid 41079221)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.33
, pp. 29377-29385
-
-
Levin, M.K.1
Patel, S.S.2
-
29
-
-
77952909625
-
The protease domain increases the translocation stepping efficiency of the hepatitis C virus NS3-4A helicase
-
Rajagopal V.; Gurjar M.; Levin M.K.; and Patel S.S. The protease domain increases the translocation stepping efficiency of the hepatitis C virus NS3-4A helicase J. Biol. Chem. 285 2010 17821 17832
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 17821-17832
-
-
Rajagopal, V.1
Gurjar, M.2
Levin, M.K.3
Patel, S.S.4
-
30
-
-
34547595373
-
Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase
-
DOI 10.1126/science.1144130
-
Myong S.; Bruno M.M.; Pyle A.M.; and Ha T. Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase Science 317 2007 513 516 (Pubitemid 47196115)
-
(2007)
Science
, vol.317
, Issue.5837
, pp. 513-516
-
-
Myong, S.1
Bruno, M.M.2
Pyle, A.M.3
Ha, T.4
-
31
-
-
80053144268
-
Single-base pair unwinding and asynchronous RNA release by the hepatitis C virus NS3 helicase
-
Cheng W.; Arunajadai S.G.; Moffitt J.R.; Tinoco I. Jr.; and Bustamante C. Single-base pair unwinding and asynchronous RNA release by the hepatitis C virus NS3 helicase Science 333 2011 1746 1749
-
(2011)
Science
, vol.333
, pp. 1746-1749
-
-
Cheng, W.1
Arunajadai, S.G.2
Moffitt, J.R.3
Tinoco Jr., I.4
Bustamante, C.5
-
32
-
-
77954383268
-
The macroscopic rate of nucleic acid translocation by hepatitis C virus helicase NS3h is dependent on both sugar and base moieties
-
Khaki A.R.; Field C.; Malik S.; Niedziela-Majka A.; Leavitt S.A.; and Wang R. The macroscopic rate of nucleic acid translocation by hepatitis C virus helicase NS3h is dependent on both sugar and base moieties J. Mol. Biol. 400 2010 354 378
-
(2010)
J. Mol. Biol.
, vol.400
, pp. 354-378
-
-
Khaki, A.R.1
Field, C.2
Malik, S.3
Niedziela-Majka, A.4
Leavitt, S.A.5
Wang, R.6
-
33
-
-
0033515425
-
Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism
-
Velankar S.S.; Soultanas P.; Dillingham M.S.; Subramanya H.S.; and Wigley D.B. Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism Cell 97 1999 75 84 (Pubitemid 29165891)
-
(1999)
Cell
, vol.97
, Issue.1
, pp. 75-84
-
-
Velankar, S.S.1
Soultanas, P.2
Dillingham, M.S.3
Subramanya, H.S.4
Wigley, D.B.5
-
34
-
-
33845657428
-
UvrD Helicase Unwinds DNA One Base Pair at a Time by a Two-Part Power Stroke
-
DOI 10.1016/j.cell.2006.10.049, PII S0092867406016011
-
Lee J.Y.; and Yang W. UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke Cell 127 2006 1349 1360 (Pubitemid 44960421)
-
(2006)
Cell
, vol.127
, Issue.7
, pp. 1349-1360
-
-
Lee, J.Y.1
Yang, W.2
-
36
-
-
77955247067
-
Processive translocation mechanism of the human Bloom's syndrome helicase along single-stranded DNA
-
Gyimesi M.; Sarlos K.; and Kovacs M. Processive translocation mechanism of the human Bloom's syndrome helicase along single-stranded DNA Nucleic Acids Res. 38 2010 4404 4414
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 4404-4414
-
-
Gyimesi, M.1
Sarlos, K.2
Kovacs, M.3
-
37
-
-
34848840105
-
Bacillus stearothermophilus PcrA monomer is a single-stranded DNA translocase but not a processive helicase in vitro
-
DOI 10.1074/jbc.M704399200
-
Niedziela-Majka A.; Chesnik M.A.; Tomko E.J.; and Lohman T.M. Bacillus stearothermophilus PcrA monomer is a single-stranded DNA translocase but not a processive helicase in vitro J. Biol. Chem. 282 2007 27076 27085 (Pubitemid 47501891)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.37
, pp. 27076-27085
-
-
Niedziela-Majka, A.1
Chesnik, M.A.2
Tomko, E.J.3
Lohman, T.M.4
-
38
-
-
0028923498
-
Thermodynamics of charged oligopeptide-heparin interactions
-
Mascotti D.P.; and Lohman T.M. Thermodynamics of charged oligopeptide-heparin interactions Biochemistry 34 1995 2908 2915
-
(1995)
Biochemistry
, vol.34
, pp. 2908-2915
-
-
Mascotti, D.P.1
Lohman, T.M.2
-
39
-
-
0028945546
-
Absorption and circular dichroism spectroscopy of nucleic acid duplexes and triplexes
-
Gray D.M.; Hung S.H.; and Johnson K.H. Absorption and circular dichroism spectroscopy of nucleic acid duplexes and triplexes Methods Enzymol. 246 1995 19 34
-
(1995)
Methods Enzymol.
, vol.246
, pp. 19-34
-
-
Gray, D.M.1
Hung, S.H.2
Johnson, K.H.3
-
40
-
-
0027455421
-
Overexpression, purification, DNA binding, and dimerization of the Escherichia coli uvrD gene product (helicase II)
-
DOI 10.1021/bi00053a028
-
Runyon G.T.; Wong I.; and Lohman T.M. Overexpression, purification, DNA binding, and dimerization of the Escherichia coli uvrD gene product (helicase II) Biochemistry 32 1993 602 612 (Pubitemid 23034900)
-
(1993)
Biochemistry
, vol.32
, Issue.2
, pp. 602-612
-
-
Runyon, G.T.1
Wong, I.2
Lohman, T.M.3
-
41
-
-
0037076536
-
Stopped-flow studies of the kinetics of single-stranded DNA binding and wrapping around the Escherichia coli SSB tetramer
-
DOI 10.1021/bi020122z
-
Kozlov A.G.; and Lohman T.M. Stopped-flow studies of the kinetics of single-stranded DNA binding and wrapping around the Escherichia coli SSB tetramer Biochemistry 41 2002 6032 6044 (Pubitemid 34498909)
-
(2002)
Biochemistry
, vol.41
, Issue.19
, pp. 6032-6044
-
-
Kozlov, A.G.1
Lohman, T.M.2
-
42
-
-
0014945021
-
Conformation of polyribouridylic acid in solution
-
Inners L.D.; and Felsenfeld G. Conformation of polyribouridylic acid in solution J. Mol. Biol. 50 1970 373 389
-
(1970)
J. Mol. Biol.
, vol.50
, pp. 373-389
-
-
Inners, L.D.1
Felsenfeld, G.2
-
43
-
-
0033947417
-
Monte Carlo applications to thermal and chemical denaturation experiments of nucleic acids and proteins
-
Williams D.J.; and Hall K.B. Monte Carlo applications to thermal and chemical denaturation experiments of nucleic acids and proteins Methods Enzymol. 321 2000 330 352 (Pubitemid 30457553)
-
(2000)
Methods in Enzymology
, vol.321
, pp. 330-352
-
-
Williams, D.J.1
Hall, K.B.2
|