-
1
-
-
4544244867
-
Rational engineering of enzyme stability
-
DOI 10.1016/j.jbiotec.2004.03.026, PII S0168165604003098
-
Eijsink VG, Bjork A, Gaseidnes S, Sirevag R, Synstad B, van den Burg B, Vriend G (2004) Rational engineering of enzyme stability. J Biotechnol 113:105-120. (Pubitemid 39237074)
-
(2004)
Journal of Biotechnology
, vol.113
, Issue.1-3
, pp. 105-120
-
-
Eijsink, V.G.H.1
Bjork, A.2
Gaseidnes, S.3
Sirevag, R.4
Synstad, B.5
Burg, B.V.D.6
Vriend, G.7
-
3
-
-
0035098779
-
Hyperthermophilic enzymes: Sources, uses, and molecular mechanisms for thermostability
-
DOI 10.1128/MMBR.65.1.1-43.2001
-
Vieille C, Zeikus GJ (2001) Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability. Microbiol Mol Biol Rev 65:1-43. (Pubitemid 32204286)
-
(2001)
Microbiology and Molecular Biology Reviews
, vol.65
, Issue.1
, pp. 1-43
-
-
Vieille, C.1
Zeikus, G.J.2
-
5
-
-
68049106179
-
Directed evolution drives the next generation of biocatalysts
-
Turner NJ (2009) Directed evolution drives the next generation of biocatalysts. Nat Chem Biol 5:567-573.
-
(2009)
Nat Chem Biol
, vol.5
, pp. 567-573
-
-
Turner, N.J.1
-
6
-
-
70450242805
-
Exploring protein fitness landscapes by directed evolution
-
Romero PA, Arnold FH (2009) Exploring protein fitness landscapes by directed evolution. Nat Rev Mol Cell Biol 10:866-876.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 866-876
-
-
Romero, P.A.1
Arnold, F.H.2
-
7
-
-
65249152992
-
Advances in generating functional diversity for directed protein evolution
-
Shivange AV, Marienhagen J, Mundhada H, Schenk A, Schwaneberg U (2009) Advances in generating functional diversity for directed protein evolution. Curr Opin Chem Biol 13:19-25.
-
(2009)
Curr Opin Chem Biol
, vol.13
, pp. 19-25
-
-
Shivange, A.V.1
Marienhagen, J.2
Mundhada, H.3
Schenk, A.4
Schwaneberg, U.5
-
8
-
-
43049123356
-
Advances in laboratory evolution of enzymes
-
Bershtein S, Tawfik D (2008) Advances in laboratory evolution of enzymes. Curr Opin Chem Biol 12:151-158.
-
(2008)
Curr Opin Chem Biol
, vol.12
, pp. 151-158
-
-
Bershtein, S.1
Tawfik, D.2
-
9
-
-
18044369861
-
Directed evolution of enzyme stability
-
DOI 10.1016/j.bioeng.2004.12.003, Directed Enzyme Evolution
-
Eijsink VG, Gaseidnes S, Borchert TV, van den Burg B (2005) Directed evolution of enzyme stability. Biomol Eng 22:21-30. (Pubitemid 40602590)
-
(2005)
Biomolecular Engineering
, vol.22
, Issue.1-3
, pp. 21-30
-
-
Eijsink, V.G.H.1
GAseidnes, S.2
Borchert, T.V.3
Van Den, B.B.4
-
10
-
-
0033779402
-
Temperature adaptation of enzymes: Lessons from laboratory evolution
-
Wintrode PL, Arnold FH (2000) Temperature adaptation of enzymes: lessons from laboratory evolution. Adv Prot Chem 55:161-225. (Pubitemid 33717335)
-
(2001)
Advances in Protein Chemistry
, vol.55
, pp. 161-225
-
-
Wintrode, P.L.1
Arnold, F.H.2
-
12
-
-
78651404436
-
Stabilization of Escherichia coli uridine phosphorylase by evolution and immobilization
-
Visser DF, Hennessy F, Rashamuse J, Pletschke B, Brady D (2011) Stabilization of Escherichia coli uridine phosphorylase by evolution and immobilization. J Mol Cat B: Enzymatic 68:279-285.
-
(2011)
J Mol Cat B: Enzymatic
, vol.68
, pp. 279-285
-
-
Visser, D.F.1
Hennessy, F.2
Rashamuse, J.3
Pletschke, B.4
Brady, D.5
-
13
-
-
78650678219
-
Thermostabilization of Bacillus circulans xylanase: Computational optimization of unstable residues based on thermal fluctuation analysis
-
Joo JC, Pack SP, Kim YH, Yoo YJ (2011) Thermostabilization of Bacillus circulans xylanase: computational optimization of unstable residues based on thermal fluctuation analysis. J Biotechnol 151:56-65.
-
(2011)
J Biotechnol
, vol.151
, pp. 56-65
-
-
Joo, J.C.1
Pack, S.P.2
Kim, Y.H.3
Yoo, Y.J.4
-
14
-
-
77957969243
-
Enhancing the stability and solubility of the glucocorticoid receptor ligand-binding domain by high-throughput library screening
-
Seitz T, Thoma R, Schoch GA, Stihle M, Benz J, D'Arcy B, Wiget A, Ruf A, Hennig M, Sterner R (2010) Enhancing the stability and solubility of the glucocorticoid receptor ligand-binding domain by high-throughput library screening. J Mol Biol 403:562-577.
-
(2010)
J Mol Biol
, vol.403
, pp. 562-577
-
-
Seitz, T.1
Thoma, R.2
Schoch, G.A.3
Stihle, M.4
Benz, J.5
D'Arcy, B.6
Wiget, A.7
Ruf, A.8
Hennig, M.9
Sterner, R.10
-
15
-
-
44949206468
-
Protein robustness promotes evolutionary innovations on large evolutionary time-scales
-
DOI 10.1098/rspb.2007.1617, PII 584648205R1733QL
-
Ferrada E, Wagner A (2008) Protein robustness promotes evolutionary innovations on large evolutionary time-scales. Proc Biol Sci 275:1595-1602. (Pubitemid 351809740)
-
(2008)
Proceedings of the Royal Society B: Biological Sciences
, vol.275
, Issue.1643
, pp. 1595-1602
-
-
Ferrada, E.1
Wagner, A.2
-
16
-
-
78651473740
-
Construction and characterization of different fusion proteins between cellulases and β-glucosidase to improve glucose production and thermostability
-
Lee HL, Chang CK, Teng KH, Liang PH (2011) Construction and characterization of different fusion proteins between cellulases and β-glucosidase to improve glucose production and thermostability. Bioresour Technol 102:3973-3976.
-
(2011)
Bioresour Technol
, vol.102
, pp. 3973-3976
-
-
Lee, H.L.1
Chang, C.K.2
Teng, K.H.3
Liang, P.H.4
-
17
-
-
78649277331
-
Thermostabilization of an esterase by alignment-guided focussed directed evolution
-
Jochens H, Aerts D, Bornscheuer UT (2010) Thermostabilization of an esterase by alignment-guided focussed directed evolution. Protein Eng Des Sel 23:903-909.
-
(2010)
Protein Eng des Sel
, vol.23
, pp. 903-909
-
-
Jochens, H.1
Aerts, D.2
Bornscheuer, U.T.3
-
18
-
-
33845288649
-
Iterative saturation mutagenesis on the basis of b factors as a strategy for increasing protein thermostability
-
DOI 10.1002/anie.200602795
-
Reetz MT, Carballeira JD, Vogel A (2006) Iterative saturation mutagenesis on the basis of B factors as a strategy for increasing protein thermostability. Angew Chem Int Ed Engl 45:7745-7751. (Pubitemid 44871333)
-
(2006)
Angewandte Chemie - International Edition
, vol.45
, Issue.46
, pp. 7745-7751
-
-
Reetz, M.T.1
Carballeira, J.D.2
Vogel, A.3
-
19
-
-
34248567845
-
Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes
-
DOI 10.1038/nprot.2007.72, PII NPROT.2007.72
-
Reetz MT, Carballeira JD (2007) Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes. Nat Protoc 2:891-903. (Pubitemid 46758808)
-
(2007)
Nature Protocols
, vol.2
, Issue.4
, pp. 891-903
-
-
Reetz, M.T.1
Carballeira, J.D.2
-
20
-
-
0026638399
-
Cloning, nucleotide sequence and expression in Escherichia coli of a lipase gene from Bacillus subtilis 168
-
Dartois V, Baulard A, Schanck K, Colson C (1992) Cloning, nucleotide sequence and expression in Escherichia coli of a lipase gene from Bacillus subtilis 168. Biochim Biophys Acta 1131:253-260.
-
(1992)
Biochim Biophys Acta
, vol.1131
, pp. 253-260
-
-
Dartois, V.1
Baulard, A.2
Schanck, K.3
Colson, C.4
-
21
-
-
0027279621
-
Purification and preliminary characterization of the extracellular lipase of Bacillus subtilis 168, an extremely basic pH-tolerant enzyme
-
Lesuisse E, Schanck K, Colson C (1993) Purification and preliminary characterization of the extracellular lipase of Bacillus subtilis 168, an extremely basic pHtolerant enzyme. Eur J Biochem 216:155-160. (Pubitemid 23255182)
-
(1993)
European Journal of Biochemistry
, vol.216
, Issue.1
, pp. 155-160
-
-
Lesuisse, E.1
Schanck, K.2
Colson, C.3
-
22
-
-
0035946913
-
The crystal structure of Bacillus subtilis lipase: A minimal alpha/beta hydrolase fold enzyme
-
van Pouderoyen G, Eggert T, Jaeger KE, Dijkstra BW (2001) The crystal structure of Bacillus subtilis lipase: a minimal alpha/beta hydrolase fold enzyme. J Mol Biol 309:216-226.
-
(2001)
J Mol Biol
, vol.309
, pp. 216-226
-
-
Van Pouderoyen, G.1
Eggert, T.2
Jaeger, K.E.3
Dijkstra, B.W.4
-
23
-
-
0035997128
-
Alternate conformations observed in catalytic serine of Bacillus subtilis lipase determined at 1.3 A resolution
-
DOI 10.1107/S090744490200714X
-
Kawasaki K, Kondo H, Suzuki M, Ohgiya S, Tsuda S (2002) Alternate conformations observed in catalytic serine of Bacillus subtilis lipase determined at 1.3 A resolution. Acta Crystallogr D58:1168-1174. (Pubitemid 34780751)
-
(2002)
Acta Crystallographica Section D: Biological Crystallography
, vol.58
, Issue.7
, pp. 1168-1174
-
-
Kawasaki, K.1
Kondo, H.2
Suzuki, M.3
Ohgiya, S.4
Tsuda, S.5
-
24
-
-
38549117292
-
Structural basis for the remarkable stability of Bacillus subtilis lipase (Lip A) at low pH
-
Rajakumara E, Acharya P, Ahmad S, Sankaranaryanan R, Rao NM (2008) Structural basis for the remarkable stability of Bacillus subtilis lipase (Lip A) at low pH. Biochim Biophys Acta 1784:302-311.
-
(2008)
Biochim Biophys Acta
, vol.1784
, pp. 302-311
-
-
Rajakumara, E.1
Acharya, P.2
Ahmad, S.3
Sankaranaryanan, R.4
Rao, N.M.5
-
25
-
-
4143110558
-
Structural basis of selection and thermostability of laboratory evolved Bacillus subtilis lipase
-
DOI 10.1016/j.jmb.2004.06.059, PII S0022283604007636
-
Acharya P, Rajakumara E, Sankaranarayanan R, Rao NM (2004) Structural basis of selection and thermostability of laboratory evolved Bacillus subtilis lipase. J Mol Biol 341:1271-1281. (Pubitemid 39092314)
-
(2004)
Journal of Molecular Biology
, vol.341
, Issue.5
, pp. 1271-1281
-
-
Acharya, P.1
Rajakumara, E.2
Sankaranarayanan, R.3
Rao, N.M.4
-
26
-
-
47049084664
-
Thermostable Bacillus subtilis lipases: In vitro evolution and structural insight
-
Ahmad S, Kamal MD, Sankaranarayanan R, Rao NM (2008) Thermostable Bacillus subtilis lipases: in vitro evolution and structural insight. J Mol Biol 381:324-340.
-
(2008)
J Mol Biol
, vol.381
, pp. 324-340
-
-
Ahmad, S.1
Kamal, M.D.2
Sankaranarayanan, R.3
Rao, N.M.4
-
27
-
-
80054692390
-
In vitro evolved non-aggregating and thermostable lipase: Structural and thermodynamic investigation
-
Kamal MZ, Ahmad S, Molugu TR, Vijayalakshmi A, Deshmukh MV, Sankaranarayanan R, Rao NM (2011) In vitro evolved non-aggregating and thermostable lipase: structural and thermodynamic investigation. J Mol Biol 413:726-741.
-
(2011)
J Mol Biol
, vol.413
, pp. 726-741
-
-
Kamal, M.Z.1
Ahmad, S.2
Molugu, T.R.3
Vijayalakshmi, A.4
Deshmukh, M.V.5
Sankaranarayanan, R.6
Rao, N.M.7
-
28
-
-
77955093114
-
Stability curves of laboratory evolved thermostable mutants of a Bacillus subtilis lipase
-
Kamal MZ, Ahmad S, Yedavalli P, Rao NM (2010) Stability curves of laboratory evolved thermostable mutants of a Bacillus subtilis lipase. Biochim Biophys Acta 1804:1850-1856.
-
(2010)
Biochim Biophys Acta
, vol.1804
, pp. 1850-1856
-
-
Kamal, M.Z.1
Ahmad, S.2
Yedavalli, P.3
Rao, N.M.4
-
29
-
-
0037739872
-
Stability studies on a lipase from Bacillus subtilis in guanidinium chloride
-
DOI 10.1023/A:1023067827678
-
Acharya P, Rao NM (2003) Stability studies on a lipase from Bacillus subtilis in guanidinium chloride. J Prot Chem 22:51-60. (Pubitemid 36532278)
-
(2003)
Journal of Protein Chemistry
, vol.22
, Issue.1
, pp. 51-60
-
-
Acharya, P.1
Rao, N.M.2
-
30
-
-
34548819311
-
Using circular dichroism collected as a function of temperature to determine the thermodynamics of protein unfolding and binding interactions
-
Greenfield NJ (2006) Using circular dichroism collected as a function of temperature to determine the thermodynamics of protein unfolding and binding interactions. Nat Protoc 1:2527-2535.
-
(2006)
Nat Protoc
, vol.1
, pp. 2527-2535
-
-
Greenfield, N.J.1
-
31
-
-
33644499478
-
Monitoring protein aggregation during thermal unfolding in circular dichroism experiments
-
Benjwal S, Verma S, Rohm KH, Gursky O (2006) Monitoring protein aggregation during thermal unfolding in circular dichroism experiments. Prot Sci 15:635-639.
-
(2006)
Prot Sci
, vol.15
, pp. 635-639
-
-
Benjwal, S.1
Verma, S.2
Rohm, K.H.3
Gursky, O.4
-
32
-
-
27144505097
-
Protein identification and analysis tools on the ExPASy server
-
Walker JM, Ed. Humana Press Inc., Totowa, NJ
-
Gasteiger E, Hoogland C, Gattiker A, Duvaud S, Wilkins MR, Appel RD, Bairoch A, Protein identification and analysis tools on the ExPASy server. In: Walker JM, Ed. (2005) The proteomics protocols handbook. Humana Press Inc., Totowa, NJ, pp 571-607.
-
(2005)
The Proteomics Protocols Handbook
, pp. 571-607
-
-
Gasteiger, E.1
Hoogland, C.2
Gattiker, A.3
Duvaud, S.4
Wilkins, M.R.5
Appel, R.D.6
Bairoch, A.7
-
33
-
-
0034237295
-
Lower kinetic limit to protein thermal stability: A proposal regarding protein stability in vivo and its relation with misfolding diseases
-
DOI 10.1002/(SICI)1097-0134(20000701)40:1<58::AID-PROT80>3.0.CO;2-M
-
Plaza del Pino IM, Ibarra-Molero B, Sanchez-Ruiz JM (2000) Lower kinetic limit to protein thermal stability: a proposal regarding protein stability in vivo and its relation with misfolding diseases. Proteins 40:58-70. (Pubitemid 30368582)
-
(2000)
Proteins: Structure, Function and Genetics
, vol.40
, Issue.1
, pp. 58-70
-
-
Plaza, D.P.I.M.1
Ibarra-Molero, B.2
Sanchez-Ruiz, J.M.3
-
34
-
-
52049112316
-
Increased folding stability of TEM-1 β-lactamase by in vitro selection
-
Kather I, Jakob RP, Dobbek H, Schmid FX (2008) Increased folding stability of TEM-1 β-lactamase by in vitro selection. J Mol Biol 383:238-251.
-
(2008)
J Mol Biol
, vol.383
, pp. 238-251
-
-
Kather, I.1
Jakob, R.P.2
Dobbek, H.3
Schmid, F.X.4
-
35
-
-
66349117989
-
Thermally denatured state determines refolding in lipase: Mutational analysis
-
Ahmad S, Rao NM (2009) Thermally denatured state determines refolding in lipase: mutational analysis. Prot Sci 18:1183-1196.
-
(2009)
Prot Sci
, vol.18
, pp. 1183-1196
-
-
Ahmad, S.1
Rao, N.M.2
-
36
-
-
77955699550
-
Experimental evolution of adenylate kinase reveals contrasting strategies toward protein thermostability
-
Miller C, Davlieva M, Wilson C, White KI, Counago R, Wu G, Myers JC, Wittung-Stafshede P, Shamoo Y (2010) Experimental evolution of adenylate kinase reveals contrasting strategies toward protein thermostability. Biophys J 99:887-896.
-
(2010)
Biophys J
, vol.99
, pp. 887-896
-
-
Miller, C.1
Davlieva, M.2
Wilson, C.3
White, K.I.4
Counago, R.5
Wu, G.6
Myers, J.C.7
Wittung-Stafshede, P.8
Shamoo, Y.9
-
37
-
-
77951977004
-
Protein kinetic stability
-
Sanchez-Ruiz JM (2010) Protein kinetic stability. Biophys Chem 148:1-15.
-
(2010)
Biophys Chem
, vol.148
, pp. 1-15
-
-
Sanchez-Ruiz, J.M.1
-
40
-
-
34447508216
-
Phaser crystallographic software
-
DOI 10.1107/S0021889807021206, PII S0021889807021206
-
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ (2007) Phaser crystallographic software. J Appl Cryst 40:658-674. (Pubitemid 47080256)
-
(2007)
Journal of Applied Crystallography
, vol.40
, Issue.4
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
43
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
DOI 10.1016/0263-7855(96)00009-4
-
Koradi R, Billeter M, Wuthrich K (1996) MOLMOL: a program for display and analysis of macromolecular structures. J Mol Graphics 14:51-55. (Pubitemid 26152976)
-
(1996)
Journal of Molecular Graphics
, vol.14
, Issue.1
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wuthrich, K.3
-
45
-
-
0037407015
-
Improved amino acid flexibility parameters
-
DOI 10.1110/ps.0236203
-
Smith DK, Radivojac P, Obradovic Z, Dunker AK, Zhu G (2003) Improved amino acid flexibility parameters. Prot Sci 12:1060-1072. (Pubitemid 36505440)
-
(2003)
Protein Science
, vol.12
, Issue.5
, pp. 1060-1072
-
-
Smith, D.K.1
Radivojac, P.2
Obradovic, Z.3
Dunker, A.K.4
Zhu, G.5
|