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Volumn 21, Issue 4, 2012, Pages 487-497

Biophysical characterization of mutants of Bacillus subtilis lipase evolved for thermostability: Factors contributing to increased activity retention

Author keywords

Aggregation; Directed evolution; Iterative saturation mutagenesis; Lipase; Thermal inactivation

Indexed keywords

ACID LIPASE; AMINO ACID; BACTERIAL ENZYME; MEMBRANE PROTEIN; MUTANT PROTEIN;

EID: 84858689964     PISSN: 09618368     EISSN: 1469896X     Source Type: Journal    
DOI: 10.1002/pro.2031     Document Type: Article
Times cited : (51)

References (45)
  • 3
    • 0035098779 scopus 로고    scopus 로고
    • Hyperthermophilic enzymes: Sources, uses, and molecular mechanisms for thermostability
    • DOI 10.1128/MMBR.65.1.1-43.2001
    • Vieille C, Zeikus GJ (2001) Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability. Microbiol Mol Biol Rev 65:1-43. (Pubitemid 32204286)
    • (2001) Microbiology and Molecular Biology Reviews , vol.65 , Issue.1 , pp. 1-43
    • Vieille, C.1    Zeikus, G.J.2
  • 5
    • 68049106179 scopus 로고    scopus 로고
    • Directed evolution drives the next generation of biocatalysts
    • Turner NJ (2009) Directed evolution drives the next generation of biocatalysts. Nat Chem Biol 5:567-573.
    • (2009) Nat Chem Biol , vol.5 , pp. 567-573
    • Turner, N.J.1
  • 6
    • 70450242805 scopus 로고    scopus 로고
    • Exploring protein fitness landscapes by directed evolution
    • Romero PA, Arnold FH (2009) Exploring protein fitness landscapes by directed evolution. Nat Rev Mol Cell Biol 10:866-876.
    • (2009) Nat Rev Mol Cell Biol , vol.10 , pp. 866-876
    • Romero, P.A.1    Arnold, F.H.2
  • 8
    • 43049123356 scopus 로고    scopus 로고
    • Advances in laboratory evolution of enzymes
    • Bershtein S, Tawfik D (2008) Advances in laboratory evolution of enzymes. Curr Opin Chem Biol 12:151-158.
    • (2008) Curr Opin Chem Biol , vol.12 , pp. 151-158
    • Bershtein, S.1    Tawfik, D.2
  • 10
    • 0033779402 scopus 로고    scopus 로고
    • Temperature adaptation of enzymes: Lessons from laboratory evolution
    • Wintrode PL, Arnold FH (2000) Temperature adaptation of enzymes: lessons from laboratory evolution. Adv Prot Chem 55:161-225. (Pubitemid 33717335)
    • (2001) Advances in Protein Chemistry , vol.55 , pp. 161-225
    • Wintrode, P.L.1    Arnold, F.H.2
  • 12
  • 13
    • 78650678219 scopus 로고    scopus 로고
    • Thermostabilization of Bacillus circulans xylanase: Computational optimization of unstable residues based on thermal fluctuation analysis
    • Joo JC, Pack SP, Kim YH, Yoo YJ (2011) Thermostabilization of Bacillus circulans xylanase: computational optimization of unstable residues based on thermal fluctuation analysis. J Biotechnol 151:56-65.
    • (2011) J Biotechnol , vol.151 , pp. 56-65
    • Joo, J.C.1    Pack, S.P.2    Kim, Y.H.3    Yoo, Y.J.4
  • 14
    • 77957969243 scopus 로고    scopus 로고
    • Enhancing the stability and solubility of the glucocorticoid receptor ligand-binding domain by high-throughput library screening
    • Seitz T, Thoma R, Schoch GA, Stihle M, Benz J, D'Arcy B, Wiget A, Ruf A, Hennig M, Sterner R (2010) Enhancing the stability and solubility of the glucocorticoid receptor ligand-binding domain by high-throughput library screening. J Mol Biol 403:562-577.
    • (2010) J Mol Biol , vol.403 , pp. 562-577
    • Seitz, T.1    Thoma, R.2    Schoch, G.A.3    Stihle, M.4    Benz, J.5    D'Arcy, B.6    Wiget, A.7    Ruf, A.8    Hennig, M.9    Sterner, R.10
  • 15
    • 44949206468 scopus 로고    scopus 로고
    • Protein robustness promotes evolutionary innovations on large evolutionary time-scales
    • DOI 10.1098/rspb.2007.1617, PII 584648205R1733QL
    • Ferrada E, Wagner A (2008) Protein robustness promotes evolutionary innovations on large evolutionary time-scales. Proc Biol Sci 275:1595-1602. (Pubitemid 351809740)
    • (2008) Proceedings of the Royal Society B: Biological Sciences , vol.275 , Issue.1643 , pp. 1595-1602
    • Ferrada, E.1    Wagner, A.2
  • 16
    • 78651473740 scopus 로고    scopus 로고
    • Construction and characterization of different fusion proteins between cellulases and β-glucosidase to improve glucose production and thermostability
    • Lee HL, Chang CK, Teng KH, Liang PH (2011) Construction and characterization of different fusion proteins between cellulases and β-glucosidase to improve glucose production and thermostability. Bioresour Technol 102:3973-3976.
    • (2011) Bioresour Technol , vol.102 , pp. 3973-3976
    • Lee, H.L.1    Chang, C.K.2    Teng, K.H.3    Liang, P.H.4
  • 17
    • 78649277331 scopus 로고    scopus 로고
    • Thermostabilization of an esterase by alignment-guided focussed directed evolution
    • Jochens H, Aerts D, Bornscheuer UT (2010) Thermostabilization of an esterase by alignment-guided focussed directed evolution. Protein Eng Des Sel 23:903-909.
    • (2010) Protein Eng des Sel , vol.23 , pp. 903-909
    • Jochens, H.1    Aerts, D.2    Bornscheuer, U.T.3
  • 18
    • 33845288649 scopus 로고    scopus 로고
    • Iterative saturation mutagenesis on the basis of b factors as a strategy for increasing protein thermostability
    • DOI 10.1002/anie.200602795
    • Reetz MT, Carballeira JD, Vogel A (2006) Iterative saturation mutagenesis on the basis of B factors as a strategy for increasing protein thermostability. Angew Chem Int Ed Engl 45:7745-7751. (Pubitemid 44871333)
    • (2006) Angewandte Chemie - International Edition , vol.45 , Issue.46 , pp. 7745-7751
    • Reetz, M.T.1    Carballeira, J.D.2    Vogel, A.3
  • 19
    • 34248567845 scopus 로고    scopus 로고
    • Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes
    • DOI 10.1038/nprot.2007.72, PII NPROT.2007.72
    • Reetz MT, Carballeira JD (2007) Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes. Nat Protoc 2:891-903. (Pubitemid 46758808)
    • (2007) Nature Protocols , vol.2 , Issue.4 , pp. 891-903
    • Reetz, M.T.1    Carballeira, J.D.2
  • 20
    • 0026638399 scopus 로고
    • Cloning, nucleotide sequence and expression in Escherichia coli of a lipase gene from Bacillus subtilis 168
    • Dartois V, Baulard A, Schanck K, Colson C (1992) Cloning, nucleotide sequence and expression in Escherichia coli of a lipase gene from Bacillus subtilis 168. Biochim Biophys Acta 1131:253-260.
    • (1992) Biochim Biophys Acta , vol.1131 , pp. 253-260
    • Dartois, V.1    Baulard, A.2    Schanck, K.3    Colson, C.4
  • 21
    • 0027279621 scopus 로고
    • Purification and preliminary characterization of the extracellular lipase of Bacillus subtilis 168, an extremely basic pH-tolerant enzyme
    • Lesuisse E, Schanck K, Colson C (1993) Purification and preliminary characterization of the extracellular lipase of Bacillus subtilis 168, an extremely basic pHtolerant enzyme. Eur J Biochem 216:155-160. (Pubitemid 23255182)
    • (1993) European Journal of Biochemistry , vol.216 , Issue.1 , pp. 155-160
    • Lesuisse, E.1    Schanck, K.2    Colson, C.3
  • 22
    • 0035946913 scopus 로고    scopus 로고
    • The crystal structure of Bacillus subtilis lipase: A minimal alpha/beta hydrolase fold enzyme
    • van Pouderoyen G, Eggert T, Jaeger KE, Dijkstra BW (2001) The crystal structure of Bacillus subtilis lipase: a minimal alpha/beta hydrolase fold enzyme. J Mol Biol 309:216-226.
    • (2001) J Mol Biol , vol.309 , pp. 216-226
    • Van Pouderoyen, G.1    Eggert, T.2    Jaeger, K.E.3    Dijkstra, B.W.4
  • 24
    • 38549117292 scopus 로고    scopus 로고
    • Structural basis for the remarkable stability of Bacillus subtilis lipase (Lip A) at low pH
    • Rajakumara E, Acharya P, Ahmad S, Sankaranaryanan R, Rao NM (2008) Structural basis for the remarkable stability of Bacillus subtilis lipase (Lip A) at low pH. Biochim Biophys Acta 1784:302-311.
    • (2008) Biochim Biophys Acta , vol.1784 , pp. 302-311
    • Rajakumara, E.1    Acharya, P.2    Ahmad, S.3    Sankaranaryanan, R.4    Rao, N.M.5
  • 25
    • 4143110558 scopus 로고    scopus 로고
    • Structural basis of selection and thermostability of laboratory evolved Bacillus subtilis lipase
    • DOI 10.1016/j.jmb.2004.06.059, PII S0022283604007636
    • Acharya P, Rajakumara E, Sankaranarayanan R, Rao NM (2004) Structural basis of selection and thermostability of laboratory evolved Bacillus subtilis lipase. J Mol Biol 341:1271-1281. (Pubitemid 39092314)
    • (2004) Journal of Molecular Biology , vol.341 , Issue.5 , pp. 1271-1281
    • Acharya, P.1    Rajakumara, E.2    Sankaranarayanan, R.3    Rao, N.M.4
  • 26
    • 47049084664 scopus 로고    scopus 로고
    • Thermostable Bacillus subtilis lipases: In vitro evolution and structural insight
    • Ahmad S, Kamal MD, Sankaranarayanan R, Rao NM (2008) Thermostable Bacillus subtilis lipases: in vitro evolution and structural insight. J Mol Biol 381:324-340.
    • (2008) J Mol Biol , vol.381 , pp. 324-340
    • Ahmad, S.1    Kamal, M.D.2    Sankaranarayanan, R.3    Rao, N.M.4
  • 28
    • 77955093114 scopus 로고    scopus 로고
    • Stability curves of laboratory evolved thermostable mutants of a Bacillus subtilis lipase
    • Kamal MZ, Ahmad S, Yedavalli P, Rao NM (2010) Stability curves of laboratory evolved thermostable mutants of a Bacillus subtilis lipase. Biochim Biophys Acta 1804:1850-1856.
    • (2010) Biochim Biophys Acta , vol.1804 , pp. 1850-1856
    • Kamal, M.Z.1    Ahmad, S.2    Yedavalli, P.3    Rao, N.M.4
  • 29
    • 0037739872 scopus 로고    scopus 로고
    • Stability studies on a lipase from Bacillus subtilis in guanidinium chloride
    • DOI 10.1023/A:1023067827678
    • Acharya P, Rao NM (2003) Stability studies on a lipase from Bacillus subtilis in guanidinium chloride. J Prot Chem 22:51-60. (Pubitemid 36532278)
    • (2003) Journal of Protein Chemistry , vol.22 , Issue.1 , pp. 51-60
    • Acharya, P.1    Rao, N.M.2
  • 30
    • 34548819311 scopus 로고    scopus 로고
    • Using circular dichroism collected as a function of temperature to determine the thermodynamics of protein unfolding and binding interactions
    • Greenfield NJ (2006) Using circular dichroism collected as a function of temperature to determine the thermodynamics of protein unfolding and binding interactions. Nat Protoc 1:2527-2535.
    • (2006) Nat Protoc , vol.1 , pp. 2527-2535
    • Greenfield, N.J.1
  • 31
    • 33644499478 scopus 로고    scopus 로고
    • Monitoring protein aggregation during thermal unfolding in circular dichroism experiments
    • Benjwal S, Verma S, Rohm KH, Gursky O (2006) Monitoring protein aggregation during thermal unfolding in circular dichroism experiments. Prot Sci 15:635-639.
    • (2006) Prot Sci , vol.15 , pp. 635-639
    • Benjwal, S.1    Verma, S.2    Rohm, K.H.3    Gursky, O.4
  • 33
    • 0034237295 scopus 로고    scopus 로고
    • Lower kinetic limit to protein thermal stability: A proposal regarding protein stability in vivo and its relation with misfolding diseases
    • DOI 10.1002/(SICI)1097-0134(20000701)40:1<58::AID-PROT80>3.0.CO;2-M
    • Plaza del Pino IM, Ibarra-Molero B, Sanchez-Ruiz JM (2000) Lower kinetic limit to protein thermal stability: a proposal regarding protein stability in vivo and its relation with misfolding diseases. Proteins 40:58-70. (Pubitemid 30368582)
    • (2000) Proteins: Structure, Function and Genetics , vol.40 , Issue.1 , pp. 58-70
    • Plaza, D.P.I.M.1    Ibarra-Molero, B.2    Sanchez-Ruiz, J.M.3
  • 34
    • 52049112316 scopus 로고    scopus 로고
    • Increased folding stability of TEM-1 β-lactamase by in vitro selection
    • Kather I, Jakob RP, Dobbek H, Schmid FX (2008) Increased folding stability of TEM-1 β-lactamase by in vitro selection. J Mol Biol 383:238-251.
    • (2008) J Mol Biol , vol.383 , pp. 238-251
    • Kather, I.1    Jakob, R.P.2    Dobbek, H.3    Schmid, F.X.4
  • 35
    • 66349117989 scopus 로고    scopus 로고
    • Thermally denatured state determines refolding in lipase: Mutational analysis
    • Ahmad S, Rao NM (2009) Thermally denatured state determines refolding in lipase: mutational analysis. Prot Sci 18:1183-1196.
    • (2009) Prot Sci , vol.18 , pp. 1183-1196
    • Ahmad, S.1    Rao, N.M.2
  • 37
    • 77951977004 scopus 로고    scopus 로고
    • Protein kinetic stability
    • Sanchez-Ruiz JM (2010) Protein kinetic stability. Biophys Chem 148:1-15.
    • (2010) Biophys Chem , vol.148 , pp. 1-15
    • Sanchez-Ruiz, J.M.1
  • 43
    • 0029881007 scopus 로고    scopus 로고
    • MOLMOL: A program for display and analysis of macromolecular structures
    • DOI 10.1016/0263-7855(96)00009-4
    • Koradi R, Billeter M, Wuthrich K (1996) MOLMOL: a program for display and analysis of macromolecular structures. J Mol Graphics 14:51-55. (Pubitemid 26152976)
    • (1996) Journal of Molecular Graphics , vol.14 , Issue.1 , pp. 51-55
    • Koradi, R.1    Billeter, M.2    Wuthrich, K.3


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