-
1
-
-
0033485925
-
Independent in vitro assembly of all three major morphological parts of the 30S ribosomal subunit of Thermus thermophilus
-
Agalarov SC, Selivanova OM, Zheleznyakova EN, Zheleznaya LA, Matvienko NI, Spirin AS. 1999. Independent in vitro assembly of all three major morphological parts of the 30S ribosomal subunit of Thermus thermophilus. Eur J Biochem 266: 533-537.
-
(1999)
Eur J Biochem
, vol.266
, pp. 533-537
-
-
Agalarov, S.C.1
Selivanova, O.M.2
Zheleznyakova, E.N.3
Zheleznaya, L.A.4
Matvienko, N.I.5
Spirin, A.S.6
-
2
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
-
DOI 10.1126/science.289.5481.905
-
Ban N, Nissen P, Hansen J, Moore PB, Steitz TA. 2000. The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science 289: 905-920. (Pubitemid 30659939)
-
(2000)
Science
, vol.289
, Issue.5481
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, T.A.5
-
3
-
-
77953271371
-
Ancient machinery embedded in the contemporary ribosome
-
Belousoff MJ, Davidovich C, Zimmerman E, Caspi Y, Wekselman I, Rozenszajn L, Shapira T, Sade-Falk O, Taha L, Bashan A, et al. 2010. Ancient machinery embedded in the contemporary ribosome. Biochem Soc Trans 38: 422-427.
-
(2010)
Biochem Soc Trans
, vol.38
, pp. 422-427
-
-
Belousoff, M.J.1
Davidovich, C.2
Zimmerman, E.3
Caspi, Y.4
Wekselman, I.5
Rozenszajn, L.6
Shapira, T.7
Sade-Falk, O.8
Taha, L.9
Bashan, A.10
-
4
-
-
60549112849
-
A hierarchical model for evolution of 23S ribosomal RNA
-
Bokov K, Steinberg SV. 2009. A hierarchical model for evolution of 23S ribosomal RNA. Nature 457: 977-980.
-
(2009)
Nature
, vol.457
, pp. 977-980
-
-
Bokov, K.1
Steinberg, S.V.2
-
5
-
-
0020690563
-
The structure of ribosomal RNA and its organization relative to ribosomal protein
-
Brimacombe R, Maly P, Zwieb C. 1983. The structure of ribosomal RNA and its organization relative to ribosomal protein. Prog Nucleic Acid Res Mol Biol 28: 1-48.
-
(1983)
Prog Nucleic Acid Res Mol Biol
, vol.28
, pp. 1-48
-
-
Brimacombe, R.1
Maly, P.2
Zwieb, C.3
-
8
-
-
23444449882
-
Building protein structure and function from modular units
-
DOI 10.1016/0167-7799(94)90078-7
-
Campbell ID, Downing AK. 1994. Building protein structure and function from modular units. Trends Biotechnol 12: 168-172. (Pubitemid 24160423)
-
(1994)
Trends in Biotechnology
, vol.12
, Issue.5
, pp. 168-172
-
-
Campbell, I.D.1
Downing, A.K.2
-
9
-
-
2942571539
-
The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
doi: 10.1186/1471-2105-3-2
-
Cannone JJ, Subramanian S, Schnare MN, Collett JR, D'Souza LM, Du Y, Feng B, Lin N, Madabusi LV, Muller KM, et al. 2002. The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 3: 2. doi: 10.1186/1471-2105-3-2.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
Feng, B.7
Lin, N.8
Madabusi, L.V.9
Muller, K.M.10
-
10
-
-
0014378880
-
The origin of the genetic code
-
Crick FH. 1968. The origin of the genetic code. J Mol Biol 38: 367-379.
-
(1968)
J Mol Biol
, vol.38
, pp. 367-379
-
-
Crick, F.H.1
-
12
-
-
58749105663
-
RNA folding: Thermodynamic and molecular descriptions of the roles of ions
-
Draper DE. 2008. RNA folding: Thermodynamic and molecular descriptions of the roles of ions. Biophys J 95: 5489-5495.
-
(2008)
Biophys J
, vol.95
, pp. 5489-5495
-
-
Draper, D.E.1
-
13
-
-
0023645139
-
Structure and accessibility of domain I of Escherichia coli 23S RNA in free RNA, in the L24-RNA complex and in 50S subunits. Implications for ribosomal assembly
-
Egebjerg J, Leffers H, Christensen A, Andersen H, Garrett RA. 1987. Structure and accessibility of domain I of Escherichia coli 23S RNA in free RNA, in the L24-RNA complex and in 50S subunits. Implications for ribosomal assembly. J Mol Biol 196: 125-136.
-
(1987)
J Mol Biol
, vol.196
, pp. 125-136
-
-
Egebjerg, J.1
Leffers, H.2
Christensen, A.3
Andersen, H.4
Garrett, R.A.5
-
14
-
-
33846266906
-
Modeling the Evolution of Protein Domain Architectures Using Maximum Parsimony
-
DOI 10.1016/j.jmb.2006.11.017, PII S0022283606015464
-
Fong JH, Geer LY, Panchenko AR, Bryant SH. 2007. Modeling the evolution of protein domain architectures using maximum parsimony. J Mol Biol 366: 307-315. (Pubitemid 46123330)
-
(2007)
Journal of Molecular Biology
, vol.366
, Issue.1
, pp. 307-315
-
-
Fong, J.H.1
Geer, L.Y.2
Panchenko, A.R.3
Bryant, S.H.4
-
15
-
-
78149403030
-
Origin and evolution of the ribosome
-
doi: 10.1101/cshperspect.a003483
-
Fox GE. 2010. Origin and evolution of the ribosome. Cold Spring Harb Perspect Biol 2: a003483. doi: 10.1101/cshperspect.a003483.
-
(2010)
Cold Spring Harb Perspect Biol
, vol.2
-
-
Fox, G.E.1
-
16
-
-
36849148382
-
Origin of life: The RNA world
-
Gilbert W. 1986. Origin of life: The RNA world. Nature 319: 618.
-
(1986)
Nature
, vol.319
, pp. 618
-
-
Gilbert, W.1
-
17
-
-
0035977093
-
High resolution structure of the large ribosomal subunit from a mesophilic eubacterium
-
DOI 10.1016/S0092-8674(01)00546-3
-
Harms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath A. 2001. High resolution structure of the large ribosomal subunit from a mesophilic eubacterium. Cell 107: 679-688. (Pubitemid 34014868)
-
(2001)
Cell
, vol.107
, Issue.5
, pp. 679-688
-
-
Harms, J.1
Schluenzen, F.2
Zarivach, R.3
Bashan, A.4
Gat, S.5
Agmon, I.6
Bartels, H.7
Franceschi, F.8
Yonath, A.9
-
18
-
-
67249104874
-
A recurrent magnesium-binding motif provides a framework for the ribosomal peptidyl transferase center
-
Hsiao C, Williams LD. 2009. A recurrent magnesium-binding motif provides a framework for the ribosomal peptidyl transferase center. Nucleic Acids Res 37: 3134-3142.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 3134-3142
-
-
Hsiao, C.1
Williams, L.D.2
-
20
-
-
33749040306
-
Ribosome origins: The relative age of 23S rRNA Domains
-
DOI 10.1007/s11084-006-9011-z
-
Hury J, Nagaswamy U, Larios-Sanz M, Fox GE. 2006. Ribosome origins: The relative age of 23S rRNA domains. Orig Life Evol Biosph 36: 421-429. (Pubitemid 44451111)
-
(2006)
Origins of Life and Evolution of the Biosphere
, vol.36
, Issue.4
, pp. 421-429
-
-
Hury, J.1
Nagaswamy, U.2
Larios-Sanz, M.3
Fox, G.E.4
-
21
-
-
33845328453
-
Size, shape, and flexibility of RNA structures
-
doi: 10.1063/1.2364190
-
Hyeon C, Dima RI, Thirumalai D. 2006. Size, shape, and flexibility of RNA structures. J Chem Phys 125: 194905. doi: 10.1063/1.2364190.
-
(2006)
J Chem Phys
, vol.125
, pp. 194905
-
-
Hyeon, C.1
Dima, R.I.2
Thirumalai, D.3
-
22
-
-
0024209174
-
Domain VI of Escherichia coli 23 S ribosomal RNA structure, assembly and function
-
DOI 10.1016/0022-2836(88)90351-8
-
Leffers H, Egebjerg J, Andersen A, Christensen T, Garrett RA. 1988. Domain VI of Escherichia coli 23S ribosomal RNA. Structure, assembly and function. J Mol Biol 204: 507-522. (Pubitemid 19029957)
-
(1988)
Journal of Molecular Biology
, vol.204
, Issue.3
, pp. 507-522
-
-
Leffers, H.1
Egebjerg, J.2
Andersen, A.3
Christensen, T.4
Garrett, R.A.5
-
23
-
-
16244412610
-
RNA structure analysis at single nucleotide resolution by Selective 2′-Hydroxyl Acylation and Primer Extension (SHAPE)
-
DOI 10.1021/ja043822v
-
Merino EJ, Wilkinson KA, Coughlan JL, Weeks KM. 2005. RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE). J AmChem Soc 127: 4223-4231. (Pubitemid 40463047)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.12
, pp. 4223-4231
-
-
Merino, E.J.1
Wilkinson, K.A.2
Coughlan, J.L.3
Weeks, K.M.4
-
24
-
-
34247162792
-
A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry
-
DOI 10.1021/ja0704028
-
Mortimer SA, Weeks KM. 2007. A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry. J Am Chem Soc 129: 4144-4145. (Pubitemid 46595421)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.14
, pp. 4144-4145
-
-
Mortimer, S.A.1
Weeks, K.M.2
-
25
-
-
57149086080
-
Time-resolved RNA SHAPE chemistry
-
Mortimer SA, Weeks KM. 2008. Time-resolved RNA SHAPE chemistry. J Am Chem Soc 130: 16178-16180.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 16178-16180
-
-
Mortimer, S.A.1
Weeks, K.M.2
-
26
-
-
0034637161
-
The structural basis of ribosome activity in peptide bond synthesis
-
DOI 10.1126/science.289.5481.920
-
Nissen P, Hansen J, Ban N, Moore PB, Steitz TA. 2000. The structural basis of ribosome activity in peptide bond synthesis. Science 289: 920-930. (Pubitemid 30659940)
-
(2000)
Science
, vol.289
, Issue.5481
, pp. 920-930
-
-
Nissen, P.1
Hansen, J.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
27
-
-
24644437810
-
RNA structure: Reading the ribosome
-
DOI 10.1126/science.1111771
-
Noller HF. 2005. RNA structure: Reading the ribosome. Science 309: 1508-1514. (Pubitemid 41266466)
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1508-1514
-
-
Noller, H.F.1
-
28
-
-
0019888579
-
Secondary structure model for 23S ribosomal RNA
-
Noller HF, Kop J, Wheaton V, Brosius J, Gutell RR, Kopylov AM, Dohme F, Herr W, Stahl DA, Gupta R, et al. 1981. Secondary structure model for 23S ribosomal RNA. Nucleic Acids Res 9: 6167-6189.
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 6167-6189
-
-
Noller, H.F.1
Kop, J.2
Wheaton, V.3
Brosius, J.4
Gutell, R.R.5
Kopylov, A.M.6
Dohme, F.7
Herr, W.8
Stahl, D.A.9
Gupta, R.10
-
29
-
-
0026639881
-
Unusual resistance of peptidyl transferase to protein extraction procedures
-
Noller HF, Hoffarth V, Zimniak L. 1992. Unusual resistance of peptidyl transferase to protein extraction procedures. Science 256: 1416-1419.
-
(1992)
Science
, vol.256
, pp. 1416-1419
-
-
Noller, H.F.1
Hoffarth, V.2
Zimniak, L.3
-
30
-
-
0035805229
-
Recognition of cognate transfer RNA by the 30S ribosomal subunit
-
DOI 10.1126/science.1060612
-
Ogle JM, Brodersen DE, Clemons WM Jr, Tarry MJ, Carter AP, Ramakrishnan V. 2001. Recognition of cognate transfer RNA by the 30S ribosomal subunit. Science 292: 897-902. (Pubitemid 32422480)
-
(2001)
Science
, vol.292
, Issue.5518
, pp. 897-902
-
-
Ogle, J.M.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Tarry, M.J.4
Carter, A.P.5
Ramakrishnan, V.6
-
31
-
-
0014369024
-
Evolution of the genetic apparatus
-
Orgel LE. 1968. Evolution of the genetic apparatus. J Mol Biol 38: 381-393.
-
(1968)
J Mol Biol
, vol.38
, pp. 381-393
-
-
Orgel, L.E.1
-
32
-
-
0032573422
-
Assembly of proteins and 5 S rRNA to transcripts of the major structural domains of 23 S rRNA
-
DOI 10.1006/jmbi.1998.2185
-
Ostergaard P, Phan H, Johansen LB, Egebjerg J, Ostergaard L, Porse BT, Garrett RA. 1998. Assembly of proteins an rRNA to transcripts of the major structural domains of 23S rRNA. J Mol Biol 284: 227-240. (Pubitemid 28542450)
-
(1998)
Journal of Molecular Biology
, vol.284
, Issue.2
, pp. 227-240
-
-
Ostergaard, P.1
Phan, H.2
Johansen, L.B.3
Egebjerg, J.4
Ostergaard, L.5
Porse, B.T.6
Garrett, R.A.7
-
33
-
-
0003075565
-
On the problems of evolution and biochemical information transfer
-
ed. M Kasha, B Pullman, Academic, New York
-
Rich A. 1962. On the problems of evolution and biochemical information transfer. In Horizons in biochemistry (ed. M Kasha, B Pullman), pp. 103-126. Academic, New York.
-
(1962)
Horizons in Biochemistry
, pp. 103-126
-
-
Rich, A.1
-
34
-
-
0027979072
-
Independent in vitro assembly of a ribonucleoprotein particle containing the 3′ domain of 16S rRNA
-
Samaha RR, O'Brien B, O'Brien TW, Noller HF. 1994. Independent in vitro assembly of a ribonucleoprotein particle containing the 3′ domain of 16S rRNA. Proc Natl Acad Sci 91: 7884-7888.
-
(1994)
Proc Natl Acad Sci
, vol.91
, pp. 7884-7888
-
-
Samaha, R.R.1
O'Brien, B.2
O'Brien, T.W.3
Noller, H.F.4
-
35
-
-
27644491082
-
Structures of the bacterial ribosome at 3.5 Å resolution
-
DOI 10.1126/science.1117230
-
Schuwirth BS, Borovinskaya MA, Hau CW, Zhang W, Vila-Sanjurjo A, Holton JM, Cate JH. 2005. Structures of the bacterial ribosome at 3.5 Å resolution. Science 310: 827-834. (Pubitemid 41567336)
-
(2005)
Science
, vol.310
, Issue.5749
, pp. 827-834
-
-
Schuwirth, B.S.1
Borovinskaya, M.A.2
Hau, C.W.3
Zhang, W.4
Vila-Sanjurjo, A.5
Holton, J.M.6
Cate, J.H.D.7
-
36
-
-
33749354360
-
Structure of the 70S ribosome complexed with mRNA and tRNA
-
DOI 10.1126/science.1131127
-
Selmer M, Dunham CM, Murphy FV, Weixlbaumer A, Petry S, Kelley AC, Weir JR, Ramakrishnan V. 2006. Structure of the 70S ribosome complexed with mRNA and tRNA. Science 313: 1935-1942. (Pubitemid 44497996)
-
(2006)
Science
, vol.313
, Issue.5795
, pp. 1935-1942
-
-
Selmer, M.1
Dunham, C.M.2
Murphy IV, F.V.3
Weixlbaumer, A.4
Petry, S.5
Kelley, A.C.6
Weir, J.R.7
Ramakrishnan, V.8
-
37
-
-
0022423421
-
Further characterization of the extremely small mitochondrial ribosomal RNAs from trypanosomes: A detailed comparison of the 9S and 12S RNAs from Crithidia fasciculata and Trypanosoma brucei with rRNAs from other organisms
-
Sloof P, Van den Burg J, Voogd A, Benne R, Agostinelli M, Borst P, Gutell R, Noller H. 1985. Further characterization of the extremely small mitochondrial ribosomal RNAs from trypanosomes: A detailed comparison of the 9S and 12S RNAs from Crithidia fasciculata and Trypanosoma brucei with rRNAs from other organisms. Nucleic Acids Res 13: 4171-4190.
-
(1985)
Nucleic Acids Res
, vol.13
, pp. 4171-4190
-
-
Sloof, P.1
Van Den Burg, J.2
Voogd, A.3
Benne, R.4
Agostinelli, M.5
Borst, P.6
Gutell, R.7
Noller, H.8
-
38
-
-
44149117720
-
The origin and evolution of the ribosome
-
doi: 10.1186/1745-6150-3-16
-
Smith TF, Lee JC, Gutell RR, Hartman H. 2008. The origin and evolution of the ribosome. Biol Direct 3: 16. doi: 10.1186/1745-6150-3-16.
-
(2008)
Biol Direct
, vol.3
, pp. 16
-
-
Smith, T.F.1
Lee, J.C.2
Gutell, R.R.3
Hartman, H.4
-
39
-
-
0028330508
-
Visualization of protein-nucleic acid interactions involved in the in vitro assembly of the Escherichia coli 50 S ribosomal subunit
-
DOI 10.1006/jmbi.1994.1077
-
Tumminia SJ, Hellmann W, Wall JS, Boublik M. 1994. Visualization of protein-nucleic acid interactions involved in the in vitro assembly of the Escherichia coli 50S ribosomal subunit. J Mol Biol 235: 1239-1250. (Pubitemid 24148926)
-
(1994)
Journal of Molecular Biology
, vol.235
, Issue.4
, pp. 1239-1250
-
-
Tumminia, S.J.1
Hellmann, W.2
Wall, J.S.3
Boublik, M.4
-
40
-
-
0027532926
-
Chemical evidence for domain assembly of the Escherichia coli 30S ribosome
-
Weitzmann CJ, Cunningham PR, Nurse K, Ofengand J. 1993. Chemical evidence for domain assembly of the Escherichia coli 30S ribosome. FASEB J 7: 177-180. (Pubitemid 23034031)
-
(1993)
FASEB Journal
, vol.7
, Issue.1
, pp. 177-180
-
-
Weitzmann, C.J.1
Cunningham, P.R.2
Nurse, K.3
Ofengand, J.4
-
42
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly BT, Brodersen DE, Clemons WM Jr, Morgan-Warren RJ, Carter AP, Vonrhein C, Hartsch T, Ramakrishnan V. 2000. Structure of the 30S ribosomal subunit. Nature 407: 327-339.
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Morgan-Warren, R.J.4
Carter, A.P.5
Vonrhein, C.6
Hartsch, T.7
Ramakrishnan, V.8
-
44
-
-
0034903851
-
Translation: In retrospect and prospect
-
DOI 10.1017/S1355838201010615
-
Woese CR. 2001. Translation: In retrospect and prospect. RNA 7: 1055-1067. (Pubitemid 32726905)
-
(2001)
RNA
, vol.7
, Issue.8
, pp. 1055-1067
-
-
Woese, C.R.1
-
45
-
-
0018936473
-
Secondary structure model for bacterial 16S ribosomal RNA: Phylogenetic, enzymatic and chemical evidence
-
Woese CR, Magrum LJ, Gupta R, Siegel RB, Stahl DA, Kop J, Crawford N, Brosius J, Gutell R, Hogan JJ, et al. 1980. Secondary structure model for bacterial 16S ribosomal RNA: Phylogenetic, enzymatic and chemical evidence. Nucleic Acids Res 8: 2275-2293. (Pubitemid 10025762)
-
(1980)
Nucleic Acids Research
, vol.8
, Issue.10
, pp. 2275-2293
-
-
Woese, C.R.1
Magrum, L.J.2
Gupta, R.3
-
46
-
-
34347347191
-
On the origin of the translation system and the genetic code in the RNA world by means of natural selection, exaptation, and subfunctionalization
-
doi: 10.1186/1745-6150-2-14
-
Wolf YI, Koonin EV. 2007. On the origin of the translation system and the genetic code in the RNA world by means of natural selection, exaptation, and subfunctionalization. Biol Direct 2: 14. doi: 10.1186/1745-6150-2-14.
-
(2007)
Biol Direct
, vol.2
, pp. 14
-
-
Wolf, Y.I.1
Koonin, E.V.2
-
47
-
-
0035805213
-
Crystal structure of the ribosome at 5.5 Å resolution
-
DOI 10.1126/science.1060089
-
Yusupov MM, Yusupova GZ, Baucom A, Lieberman K, Earnest TN, Cate JH, Noller HF. 2001. Crystal structure of the ribosome at 5.5 Å resolution. Science 292: 883-896. (Pubitemid 32422479)
-
(2001)
Science
, vol.292
, Issue.5518
, pp. 883-896
-
-
Yusupov, M.M.1
Yusupova, G.Zh.2
Baucom, A.3
Lieberman, K.4
Earnest, T.N.5
Cate, J.H.D.6
Noller, H.F.7
|