Control of the evolution of iron peroxide intermediate in superoxide reductase from desulfoarculus baarsii. Involvement of lysine 48 in protonation

Journal of the American Chemical Society

Volumn 134, Issue 11, 2012, Pages 5120-5130

  Bonnot, Florence ^a,b,c   Molle, Thibaut ^a,b,c   Ménage, Stéphane ^a,b,c   Moreau, Yohann ^a,b,c   Duval, Simon ^a,b,c   Favaudon, Vincent ^d   Houée Levin, Chantal ^e   Nivière, Vincent ^a,b,c  

^a CEA GRENOBLE   (France)

^b UNIV GRENOBLE ALPES   (France)

^c CNRS   (France)

^d INSERM U612   (France)

^e UNIVERSITÉ PARIS SUD   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CATALYTIC MECHANISMS; CYTOCHROME P450; DATA SUPPORT; FERRIC IRON; HYDROPEROXIDES; INTERMEDIATE SPECIE; METALLOENZYMES; NONHEME IRON; PEROXIDE INTERMEDIATE; PROTONATED; REACTION SCHEMES; SUPEROXIDE ANION RADICALS; SUPEROXIDE REDUCTASE; TWO-ELECTRON OXIDATION; WILD TYPES; X-RAY STRUCTURE;

AMINO ACIDS; DENSITY FUNCTIONAL THEORY; IRON; OLEFINS; OXIDATION; OXYGEN; PROTONATION; RADIOLYSIS;

REACTION INTERMEDIATES;

ALKENE; BACTERIAL ENZYME; CYTOCHROME P450; EPOXIDE; HYDROGEN PEROXIDE; IRON DERIVATIVE; ISOLEUCINE; LYSINE; OXYGEN; SUPEROXIDE REDUCTASE; UNCLASSIFIED DRUG;

ABSORPTION; ARTICLE; BACTERIAL MUTATION; CATALYSIS; CHEMICAL REACTION; CHEMICAL STRUCTURE; DESULFOARCULUS; DESULFOARCULUS BAARSII; MOLECULAR EVOLUTION; MOLECULAR MECHANICS; OXIDATION; PROTON TRANSPORT; PULSE RADIOLYSIS; WILD TYPE;

DELTAPROTEOBACTERIA; EVOLUTION, MOLECULAR; FERRIC COMPOUNDS; LYSINE; OXIDOREDUCTASES; PEROXIDES; PROTONS; QUANTUM THEORY;

EID: 84858666236     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja209297n     Document Type: Article

References (51)

1. Imlay, J. A. Annu. Rev. Biochem. 2008, 77, 755-776
2. Winterbourn, C. C. Nat. Chem. Biol. 2008, 4, 278-286
3. Fridovich, I. Annu. Rev. Biochem. 1995, 64, 97-112
4. Jenney, F. E., Jr.; Verhagen, M. F. J. M.; Cui, X.; Adams, M. W. W. Science 1999, 286, 306-309
5. Lombard, M.; Fontecave, M.; Touati, D.; Nivière, V. J. Biol. Chem. 2000, 275, 115-121
6. Emerson, J. P.; Coulter, E. D.; Phillips, R. S.; Kurtz, D. M., Jr. J. Biol. Chem. 2003, 278, 39662-39668
7. Santos-Silva, T.; Trincao, J.; Carvalho, A. L.; Bonifacio, C.; Auchère, F.; Raleiras, P.; Moura, I.; Moura, J. J. G.; Romao, J. J. Biol. Inorg. Chem 2006, 11, 548-558
8. Grunden, A. M.; Jenney, F. E., Jr.; Ma, K.; Ji, M.; Weinberg, M. V.; Adams, M. W. W. Appl. Environ. Microbiol. 2005, 71, 1522-1530
9. Kurtz, D. M., Jr. Acc. Chem. Res. 2004, 37, 902-908
10. Pereira, A. S.; Tavares, P.; Folgosa, F.; Almeida, R. M.; Moura, I.; Moura, J. J. G. Eur. J. Inorg. Chem. 2007, 18, 2569-2581
11. Pinto, A. F.; Rodrigues, J. V.; Teixeira, M. Biochim. Biophys. Acta 2010, 1804, 285-297
12. Nivière, V.; Bonnot, F.; Bourgeois, D. In Handbook of Metalloproteins,; Messerschmidt, A., Ed.; John Wiley & Sons, Ltd.: Chichester, UK, 2011; Vols. 4 & 5, Superoxide reductase, pp 246-258.
13. Yeh, A. P.; Hu, Y.; Jenney, F. E., Jr.; Adams, M. W. W.; Rees, D. C. Biochemistry 2000, 39, 2499-2508
14. Coelho, A.; Matias, P.; Fülöp, V.; Thompson, A.; Gonzalez, A.; Carrondo, M. A. J. Biol. Inorg. Chem. 1997, 2, 680-689
15. Denisov, I. G.; Makris, T. M.; Sligar, S. G.; Schlichting, I. Chem. Rev. 2005, 105, 2253-2277
16. Folgosa, F.; Cordas, C. M.; Santos, J. A.; Pereira, A. S.; Moura, J. J.; Tavares, P. A.; Moura, I. Biochem. J. 2011, 438, 485-494
17. Bonnot, F.; Duval, S.; Lombard, M.; Valton, J.; Houée-Levin, C.; Nivière, V. J. Biol. Inorg. Chem. 2011, 16, 889-896
18. Emerson, J. P.; Coulter, E. D.; Cabelli, D. E.; Phillips, R. S.; Kurtz, D. M., Jr. Biochemistry 2002, 41, 4348-4357
19. Nivière, V.; Asso, M.; Weill, C. O.; Lombard, M.; Guigliarelli, B.; Favaudon, V.; Houée-Levin, C. Biochemistry 2004, 43, 808-818
20. Rodrigues, J. V.; Abreu, I. A.; Cabelli, D. E.; Teixeira, M. Biochemistry 2006, 45, 9266-9278
21. Bonnot, F.; Houée-Levin, C.; Favaudon, V.; Nivière, V. Biochim. Biophys. Acta 2010, 1804, 762-767
22. Mathé, C.; Mattioli, T. A.; Horner, O.; Lombard, M.; Latour, J. M.; Fontecave, M.; Nivière, V. J. Am. Chem. Soc. 2002, 124, 4966-4967
23. Mathé, C.; Nivière, V.; Mattioli, T. A. Biophys. Chem. 2006, 119, 38-48
24. Mathé, C.; Weill, C. O.; Mattioli, T. A.; Berthomieu, C.; Houée-Levin, C.; Tremey, E.; Nivière, V. J. Biol. Chem. 2007, 282, 22207-22216
25. Katona, G.; Carpentier, P.; Nivière, V.; Amara, P.; Adam, V.; Ohana, J.; Tsanov, N.; Bourgeois, D. Science 2007, 316, 449-453
26. Kitagawa, T.; Dey, A.; Lugo-Mas, P.; Benedict, J. B.; Kaminsky, W.; Solomon, E.; Kovacs, J. A. J. Am. Chem. Soc. 2006, 128, 14448-14449
27. Von Sonntag, C. The Classical Basis of Radiation Biology; Taylor and Francis: London, 1987.
28. Mottola, H. A.; Simpson, B. E.; Gorin, G. Anal. Chem. 1970, 40, 410-411
29. Freccero, M.; Gandolfi, R.; Sarzi-Amade, M.; Rastelli, A. J. Org. Chem. 2000, 65, 8948-8959
30. Frisch, M. J.; et al. Gaussian 03, revision B.05; Gaussian, Inc.: Wallingford, CT, 2004.
31. Becke, A. D. Chem. Phys. 1993, 98, 5648-5652
32. Lee, C.; Yang, W.; Parr, R. G. Phys. Rev. B 1988, 37, 785-789
33. Hay, P. J.; Wadt, W. R. J. Chem. Phys. 1985, 82, 270-283
34. Bauernschmitt, R.; Ahlrichs, R. Chem. Phys. Lett. 1996, 256, 454-464
35. Casida, M. E.; Jamorski, C.; Casida, K. C.; Salhu, D. R. J. Chem. Phys. 1998, 108, 4439-4449
36. Cancès, M. T.; Mennucci, B.; Tomasi, J. J. Chem. Phys. 1997, 107, 3210-3221
37. 2 values determined for the wt, E47A, and K48I SORs.
38. Mathé, C.; Nivière, V.; Mattioli, T. A. J. Am. Chem. Soc. 2005, 127, 16436-14441
39. Dey, A.; Jenney, F. E., Jr.; Adams, M. W.; Johnson, M. K.; Hodgson, K. O.; Hedman, B.; Solomon, E. I. J. Am. Chem. Soc. 2007, 129, 12418-12431
40. Nam, W. Acc. Chem. Res. 2007, 40, 522-531
41. Que, L., Jr.; Tolman, W. B. Nature 2008, 455, 333-340
42. Kovaleva, E. G.; Lipscomb, J. D. Nat. Chem. Biol. 2008, 4, 186-193
43. Park, M.; Lee, J.; Suh, Y.; Kim, J.; Nam, W. J. Am. Chem. Soc. 2006, 128, 2630-2634
44. Brines, L. M.; Kovacs, J. A. Eur. J. Inorg. Chem. 2007, 1, 29-38
45. Bukowski, M. R.; Halfen, H. L.; van den Berg, T. A.; Halfen, J. A.; Que, L., Jr. Angew. Chem., Int. Ed. 2005, 44, 584-587
46. Sit, P. H.-L.; Migliore, A.; Ho, M. H.; Klein, M. L. J. Chem. Theory Comput. 2010, 6, 2896-2909
47. Clay, M. D.; Jenney, F. E., Jr.; Hagedoorn, P. L.; George, G. N.; Adams, M. W. W.; Johnson, M. K. J. Am. Chem. Soc. 2002, 124, 788-805
48. Mbughuni, M. M.; Chakrabarti, M.; Hayden, J. A.; Bominaar, E. L.; Hendrich, M. P.; Münck, E.; Lipscomb, J. D. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 16788-16793
49. Mukherjee, A.; Cranswick, M. A.; Chakrabarti, M.; Paine, T. K.; Fujisawa, K.; Münck, E.; Que, L., Jr. Inorg. Chem. 2010, 49, 3618-3628
50. Kovaleva, E. G.; Lipscomb, J. D. Science 2007, 316, 453-457
51. Kovaleva, E. G.; Neibergall, M. B.; Chakrabarty, S.; Lipscomb, J. D. Acc. Chem. Res. 2007, 40, 475-483