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Volumn 50, Issue 1, 2012, Pages 471-489

Experimental design for biological systems

Author keywords

Bilevel optimization; Biological applications; Dynamical systems; Experimental design; Inverse problems; Optimal experimental design; Ordinary differential equation; Parameter estimation; System biology

Indexed keywords

BI-LEVEL OPTIMIZATION; BILEVEL OPTIMIZATION PROBLEMS; BIOLOGICAL APPLICATIONS; BIOLOGICAL MODELS; COMPUTATIONAL TOOLS; DESIGN PROBLEMS; EFFECTIVE ALGORITHMS; ENERGY METABOLISM; INSULIN RESISTANCE; MODEL PARAMETERS; OPTIMAL EXPERIMENTAL DESIGN; OPTIMAL EXPERIMENTAL DESIGNS; OPTIMIZATION METHOD; SYSTEM BIOLOGY; SYSTEM OF DIFFERENTIAL EQUATIONS; UNKNOWN PARAMETERS;

EID: 84858657760     PISSN: 03630129     EISSN: None     Source Type: Journal    
DOI: 10.1137/100791063     Document Type: Article
Times cited : (38)

References (40)
  • 2
    • 48749095711 scopus 로고    scopus 로고
    • Computational procedures for optimal experimental design in biological systems
    • E. Balsa-Canto, A. Alonso, and J. Banga, Computational procedures for optimal experimental design in biological systems, IET Syst. Biol., 2 (2008), pp. 163-172.
    • (2008) IET Syst. Biol. , vol.2 , pp. 163-172
    • Balsa-Canto, E.1    Alonso, A.2    Banga, J.3
  • 3
  • 5
    • 0019810028 scopus 로고
    • Physiologic evaluation of factors controlling glucose tolerance in man
    • R. Bergman, L. Phillips, and C. Cobelli, Physiologic evaluation of factors controlling glucose tolerance in man, J. Clin. Invest., 68 (1981), pp. 1456-1467.
    • (1981) J. Clin. Invest. , vol.68 , pp. 1456-1467
    • Bergman, R.1    Phillips, L.2    Cobelli, C.3
  • 6
    • 0026705370 scopus 로고
    • Standardization of ivgtt to predict iddm
    • P. Bingley, Standardization of IVGTT to predict IDDM, Diabetes Care, 15 (1992), pp. 1313-1316.
    • (1992) Diabetes Care , vol.15 , pp. 1313-1316
    • Bingley, P.1
  • 8
    • 0347624611 scopus 로고    scopus 로고
    • MINMOD millennium: A computer program to calculate glucose effectiveness and insulin sensitivity from the frequently sampled intravenous glucose tolerance test
    • DOI 10.1089/152091503322641060
    • R. Boston, D. Stefanovski, and P. Moate, MINMOD millennium: a computer program to calculate glucose effectiveness and insulin sensitivity from the frequently sampled intravenous glucose tolerance test, Diabetes Technol. Ther., 5 (2003), pp. 1003-1015. (Pubitemid 38009940)
    • (2003) Diabetes Technology and Therapeutics , vol.5 , Issue.6 , pp. 1003-1015
    • Boston, R.C.1    Stefanovski, D.2    Moate, P.J.3    Sumner, A.E.4    Watanabe, R.M.5    Bergman, R.N.6
  • 10
    • 70349780438 scopus 로고    scopus 로고
    • A new delay-sir model for pulse vaccination
    • C. Briat, A new delay-SIR model for pulse vaccination, Biomed. Signal Proces., 4 (2009), pp. 272-277.
    • (2009) Biomed. Signal Proces. , vol.4 , pp. 272-277
    • Briat, C.1
  • 11
    • 59749104367 scopus 로고    scopus 로고
    • From sparse solutions of systems of equations to sparse modeling of signals and images
    • A. M. Bruckstein, D. L. Donoho, and M. Elad, From sparse solutions of systems of equations to sparse modeling of signals and images, SIAM Rev., 51 (2009), pp. 34-81.
    • (2009) SIAM Rev. , vol.51 , pp. 34-81
    • Bruckstein, A.M.1    Donoho, D.L.2    Elad, M.3
  • 12
    • 31744440684 scopus 로고    scopus 로고
    • Robust uncertainty principles: Exact signal reconstruction from highly incomplete data
    • E. J. Candes, J. Romberg, and T. Tao, Robust uncertainty principles: Exact signal reconstruction from highly incomplete data, IEEE Trans. Inform. Theory, 4 (2006).
    • (2006) IEEE Trans. Inform. Theory , vol.4
    • Candes, E.J.1    Romberg, J.2    Tao, T.3
  • 13
    • 84972528615 scopus 로고
    • Bayesian experimental design: A review
    • K. Chaloner and I. Verdinelli, Bayesian experimental design: A review, Statist. Sci., 10 (1995), pp. 273-304.
    • (1995) Statist. Sci. , vol.10 , pp. 273-304
    • Chaloner, K.1    Verdinelli, I.2
  • 14
    • 0026245856 scopus 로고
    • A reduced sampling schedule for estimating the parameters of the glucose minimal model from a labeled ivgtt
    • C. Cobelli and A. Ruggeri, A reduced sampling schedule for estimating the parameters of the glucose minimal model from a labeled IVGTT, IEEE Trans. Biomed. Engrg., 38 (1991), pp. 1023-1029.
    • (1991) IEEE Trans. Biomed. Engrg. , vol.38 , pp. 1023-1029
    • Cobelli, C.1    Ruggeri, A.2
  • 15
    • 0021892176 scopus 로고
    • Optimal design of multioutput sampling schedules-software and applications to endocrine-metabolic and pharmacokinetic models
    • C. Cobelli, A. Ruggeri, J. J. DiStefano, and E. M. Landaw, Optimal design of multioutput sampling schedules-software and applications to endocrine-metabolic and pharmacokinetic models, IEEE Trans. Biomed. Engrg., BME-32, 1985, pp. 249-256.
    • (1985) IEEE Trans. Biomed. Engrg. , vol.BME-32 , pp. 249-256
    • Cobelli, C.1    Ruggeri, A.2    DiStefano, J.J.3    Landaw, E.M.4
  • 16
    • 0017261427 scopus 로고
    • Tracer experiment design for unique identification of nonlinear physiological systems
    • J. J. DiStefano, 3rd, Tracer experiment design for unique identification of nonlinear physiological systems, Am. J. Physiol., 230 (1976), pp. 476-485.
    • (1976) Am. J. Physiol. , vol.230 , pp. 476-485
    • DiStefano III, J.J.1
  • 17
    • 33646365077 scopus 로고    scopus 로고
    • For most large underdetermined systems of linear equations the minimal 1-norm solution is also the sparsest solution
    • D. D. Donoho, For most large underdetermined systems of linear equations the minimal 1-norm solution is also the sparsest solution, Comm. Pure Appl. Math., 59 (2006), pp. 797-829.
    • (2006) Comm. Pure Appl. Math. , vol.59 , pp. 797-829
    • Donoho, D.D.1
  • 20
    • 54749091655 scopus 로고    scopus 로고
    • Numerical methods for experimental design of largescale linear ill-posed inverse problems
    • E. Haber, L. Horesh, and L. Tenorio, Numerical methods for experimental design of largescale linear ill-posed inverse problems, Inverse Problems, 24 (2008), pp. 273-304.
    • (2008) Inverse Problems , vol.24 , pp. 273-304
    • Haber, E.1    Horesh, L.2    Tenorio, L.3
  • 22
    • 84977692649 scopus 로고
    • On the differential diagnosis between benign and malignant glycosuria by means of intravenous injections of small quantities of grape-sugar
    • S. Jörgensen and T. Plum, On the differential diagnosis between benign and malignant glycosuria by means of intravenous injections of small quantities of grape-sugar, Acta Med. Scand., 58 (1923), pp. 161-200.
    • (1923) Acta Med. Scand. , vol.58 , pp. 161-200
    • Jörgensen, S.1    Plum, T.2
  • 26
    • 33644874912 scopus 로고    scopus 로고
    • Reduced sampling schedule for the glucose minimal model: Importance of bayesian estimation
    • P. Magni, G. Sparacino, R. Bellazzi, and C. Cobelli, Reduced sampling schedule for the glucose minimal model: Importance of Bayesian estimation, Amer. J. Physiol., 290 (2006), pp. E177-E184.
    • (2006) Amer. J. Physiol. , vol.290
    • Magni, P.1    Sparacino, G.2    Bellazzi, R.3    Cobelli, C.4
  • 28
    • 0022797049 scopus 로고
    • MINMOD: A computer program to calculate insulin sensitivity and pancreatic responsivity from the frequently sampled intravenous glucose tolerance test
    • DOI 10.1016/0169-2607(86)90106-9
    • G. Pacini and R. Bergman, MINMOD: A computer program to calculate insulin sensitivity and pancreatic responsivity from the frequently sampled intravenous glucose tolerance test, Comput. Methods Prog. Biol., 23 (1986), pp. 113-122. (Pubitemid 16027716)
    • (1986) Computer Methods and Programs in Biomedicine , vol.23 , Issue.2 , pp. 113-122
    • Pacini, G.1    Bergman, R.N.2
  • 29
    • 33344464286 scopus 로고    scopus 로고
    • Parameter estimation in continuous-time dynamic models using principal differential analysis
    • DOI 10.1016/j.compchemeng.2005.11.008, PII S0098135405003042
    • A. Poyton, M. Varziri, K. McAuley, P. McLellan, and J. O. Ramsay, Parameter estimation in continuous-time dynamic models using principal differential analysis, Comput. Chem. Engrg., 30 (2006), pp. 698-708. (Pubitemid 43289124)
    • (2006) Computers and Chemical Engineering , vol.30 , Issue.4 , pp. 698-708
    • Poyton, A.A.1    Varziri, M.S.2    McAuley, K.B.3    McLellan, P.J.4    Ramsay, J.O.5
  • 30
    • 37849021822 scopus 로고    scopus 로고
    • Optimal experimental design and some related control problems
    • L. Pronzato, Optimal experimental design and some related control problems, Automatica, 44 (2008), pp. 303-325.
    • (2008) Automatica , vol.44 , pp. 303-325
    • Pronzato, L.1
  • 33
    • 0001510664 scopus 로고    scopus 로고
    • Principal differential analysis: Data reduction by differential operators
    • J. O. Ramsay, Principal differential analysis: Data reduction by differential operators, J. Roy. Statist. Soc. Ser. B, (1996), pp. 495-508.
    • (1996) J. Roy. Statist. Soc. Ser. B , pp. 495-508
    • Ramsay, J.O.1
  • 35
    • 84858628007 scopus 로고
    • A reduced sampling schedule for identifying model-based parameters of glucose metabolism: Design and validation
    • B. Barber D. Cao, D. Qin, and G. Wagner, eds.
    • A. Ruggeri and C. Cobelli, A reduced sampling schedule for identifying model-based parameters of glucose metabolism: Design and validation, in Proceedings of the 6th Conference on Medical Informatics, B. Barber, D. Cao, D. Qin, and G. Wagner, eds., 1989, pp. 533-537.
    • (1989) Proceedings of the 6th Conference on Medical Informatics , pp. 533-537
    • Ruggeri, A.1    Cobelli, C.2
  • 39
    • 34548692945 scopus 로고    scopus 로고
    • Cryptic population dynamics: Rapid evolution masks trophic interactions
    • DOI 10.1371/journal.pbio.0050235
    • T. Yoshida, S. Ellner, L. Jones, B. J. M. Bohannan, R. E. Lenski, and N. G. Hairston, Jr., Cryptic population dynamics: Rapid evolution masks trophic interactions, PLoS Biol., 5 (2007), pp. 1868-1879. (Pubitemid 47416585)
    • (2007) PLoS Biology , vol.5 , Issue.9 , pp. 1868-1879
    • Yoshida, T.1    Ellner, S.P.2    Jones, L.E.3    Bohannan, B.J.M.4    Lenski, R.E.5    Hairston Jr., N.G.6
  • 40
    • 36949004699 scopus 로고    scopus 로고
    • From inverse problems in mathematical physiology to quantitative differential diagnoses
    • DOI 10.1371/journal.pcbi.0030204
    • S. Zenker, J. Rubin, and G. Clermont, From inverse problems in mathematical physiology to quantitative differential diagnoses, PLoS Comput. Biol., 3 (2007), pp. 2072-2086. (Pubitemid 350241934)
    • (2007) PLoS Computational Biology , vol.3 , Issue.11 , pp. 2072-2086
    • Zenker, S.1    Rubin, J.2    Clermont, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.