A global analysis of molecular markers and phenotypic traits in local chicken breeds in Taiwan

Animal Genetics

Volumn 43, Issue 2, 2012, Pages 172-182

  Chang, C S ^a,b   Chen, C F ^a   Berthouly Salazar, C ^c   Chazara, O ^d   Lee, Y P ^a   Chang, C M ^e   Chang, K H ^a   Bed'Hom, B ^b   Tixier Boichard, M ^b  

^a NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^b UMR1313 GÉNÉTIQUE ANIMALE ET BIOLOGIE INTÉGRATIVE   (France)

^c UNIVERSITY OF PRETORIA   (South Africa)

^d UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^e CHANG GUNG UNIVERSITY   (Taiwan)

Author keywords

body weight; immune response; local chicken; major histocompatibility complex; melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor); microsatellites; mitochondrial DNA

Indexed keywords

MELANOCORTIN 1 RECEPTOR; MICROSATELLITE DNA; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BODY WEIGHT; CHICKEN; FEMALE; GENETICS; MAJOR HISTOCOMPATIBILITY COMPLEX; MALE; PHENOTYPE;

ANIMALS; BODY WEIGHT; CHICKENS; DNA, MITOCHONDRIAL; FEMALE; MAJOR HISTOCOMPATIBILITY COMPLEX; MALE; MICROSATELLITE REPEATS; PHENOTYPE; RECEPTOR, MELANOCORTIN, TYPE 1;

NEWCASTLE DISEASE VIRUS; OVIS ARIES;

EID: 84858338695     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2011.02226.x     Document Type: Article

References (35)

1. Bandelt H.J., Forster P., &, Röhl A., (1999) Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution 16, 37-48. (Pubitemid 29024937)
2. Belkhir K., Borsa P., Chikhi L., Raufaste N., &, Bonhomme F., (2004) GENETIX 4.05, Logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5000. Université de Montpellier II, Montpellier, France.
3. Berthouly C., Bed'Hom B., Tixier-Boichard M., Chen C.F., Lee Y.P., Laloë D., Legros H., Verrier E., &, Rognon X., (2008) Using molecular markers and multivariate methods to study the genetic diversity of local European and Asian chicken breeds. Animal Genetics 39, 121-9. (Pubitemid 351441688)
4. Berthouly-Salazar C., Rognon X., Nhu Van T., et al. (2010) Vietnamese chickens: a gate towards Asian genetic diversity. BMC Genetics 11, 53.
5. Chang C.S., Tixier-Boichard M., Charaza O., Lee Y.P., Chen C.F., &, Bed'hom B., (2010) Monitoring Polymorphism at the Major Histocompatibility Complex Level in Local Chicken Breeds Under a Conservation Program in Taiwan. XIIIth European Poultry Conference, Tours, France.
6. Chao C.H., &, Lee Y.P., (2001) Relationship between reproductive performance and immunity in Taiwan country chickens. Poultry Science 80, 535-40.
7. Chen C.F., Berthouly C., Rognon X., Chang K.H., Laloë D., Legros H., Verrier E., Tixier-Boichard M., &, Lee Y.P., (2004) Characterisation of Six Asian Local Chicken Breeds: Performances and Polymorphism from Microsatellite Markers. 29th International Conference on International Society of Animal Genetics (ISAG), Tokyo, Japan.
8. Chen C.F., Lee Y.P., Tixier-Boichard M., Bed'hom B., Chang C.M., &, Coville J.L., (2005) Single nucleotide polymorphism in the melanocortin-1 receptor gene of local chickens. Journal of the Chinese Society of Animal Science 34 (SUPPL.), 99.
9. Chessel D., Dufour A.B., &, Thioulouse J., (2004) The ade4 package-I: one-table methods. R-News 4, 5-10.
10. Dray S., &, Dufour A.B., (2007) The ade4 package: implementing the duality diagram for ecologists. Journal of Statistical Software 22, last accessed on July 15, 2010.
11. FAO (2007) Status of animal genetic resources. In: The State of the World's Animal Genetic Resources for Food and Agriculture (Ed. by, B. Rischkowsky, &, D. Pilling,), pp. 23-49. Commission on Genetic Resources for Food and Agriculture, Rome.
12. Flori L., Fritz S., Jaffrézic F., Boussaha M., Gut I., Heath S., Foulley J.L., &, Gautier M., (2009) The genome response to artificial selection: a case study in dairy cattle. PLoS ONE 4, e6595.
13. Fulton J.E., Juul-Madsen H.R., Ashwell C.M., McCarron A.M., Arthur J.A., O'Sullivan N.P., &, Taylor R.L. Jr, (2006) Molecular genotype identification of the Gallus gallus major histocompatibility complex. Immunogenetics 58, 407-21. (Pubitemid 43830105)
14. Hall T.A., (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41, 95-8.
15. Hill M.O., &, Smith A.J.E., (1976) Principal component analysis of taxonomic data with multi-state discrete characters. Taxon 25, 249-55.
16. Hillel J., Groenen M.A.M., Tixier-Boichard M., et al. (2003) Biodiversity of 52 chicken populations assessed by microsatellite typing of DNA pools. Genetics Selection Evolution 35, 533-57. (Pubitemid 37118230)
17. Kerje S., Lind J., Schütz K., Jensen P., &, Andersson L., (2003) Melanocortin 1-receptor (MC1R) mutations are associated with plumage colour in chicken. Animal Genetics 34, 241-8. (Pubitemid 36946719)
18. Laloë D., Moazami-Goudarzi K., &, Chessel D., (2002) Contribution of individual markers to the analysis of the relationships among breeds by correspondence analysis. 7th World Congress on Genetics Applied to Livestock Production, August 19-23. Montpellier, France.
19. Laloë D., Jombart T., Dufour A.B., &, Moazami-Goudarzi K., (2007) Consensus genetic structuring and typological value of markers using multiple co-inertia analysis. Genetics Selection Evolution 39, 545-67. (Pubitemid 350057067)
20. Lamont S.J., (1989) The chicken major histocompatibility complex in disease resistance and poultry breeding. Journal of Dairy Science 72, 1328-33.
21. Lamont S.J., Pinard-van der Laan M.H., Cahaner A., van der Poel J.J., &, Parmentier H.K., (2003) Selection for disease resistance: direct selection on the immune response. In: Poultry Genetics, Breeding and Biotechnology (Ed. by, W.M. Muir, &, S.E. Aggrey,), pp. 399-418. CABI Press, MA.
22. Langella O., (1999) Populations 1.2.30 Copyright 1999. CNRS UPR9034, France.
23. Lee Y.P., (2006) Taiwan country chicken: a slow growth breed for eating quality. In: Symposium, 2006 Scientific Cooperation in Agriculture between Council of Agriculture (Taiwan, R.O.C.) and Institut National de Recherche Agronomique (France) (Ed. by, C.W. Liao, B.L. Shih, M.L. Lee, A.L. Hsu, &, Y.S. Cheng,), Technical Bulletin of Livestock Research Institute 103, 121-32.
24. Ling M.K., Lagerström M.C., Fredriksson R., Okimoto R., Mundy N.I., Takeuchi S., &, Schiöth H.B., (2003) Association of feather colour with constitutively active melanocortin 1 receptors in chicken. European Journal of Biochemistry 270, 1441-9. (Pubitemid 36459582)
25. Liu Y.P., Wu G.S., Yao Y.G., Miao Y.W., Luikart G., Baig M., Beja-Pereira A., Ding Z.L., Palanichamy M.G., &, Zhang Y.P., (2006) Multiple maternal origins of chickens: out of the Asian jungles. Molecular Phylogenetics and Evolution 38, 12-9. (Pubitemid 41773270)
26. Macleod M.G., Tullett S.G., &, Jewitt T.R., (1979) Effects of food intake regulation on the energy metabolism of hens and cockerels of a layer strain. British Poultry Science 20, 521-31.
27. Mundy N.I., (2005) A window on the genetics of evolution: MC1R and plumage colouration in birds. Proceedings of the Royal Society Biological Sciences 272, 1633-40. (Pubitemid 41414669)
28. Nei M., Tajima F., &, Tateno Y., (1983) Accuracy of estimated phylogenetic trees from molecular data. Journal of Molecular Evolution 19, 153-70. (Pubitemid 13042712)
29. R Core Development Team (2006) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0,.
30. SAS Institute. (2008) SAS/STAT User's Guide. Release 9.1.3 Edition. SAS Institute Inc., Cary, NC.
31. Smyth J.R., (1996) Genetics of plumage, skin and pigmentation in chickens. In: Poultry Breeding and Genetics (Ed. by, R.D. Crawford,), pp. 109-67. Elsevier Science, New York.
32. Staden R., Beal K.F., &, Bonfield J.K., (1998) The Staden package. Methods in Molecular Biology 132, 115-30.
33. Takeuchi S., Suzuki H., Yabuuchi M., &, Takahashi S., (1996) A possible involvement of melanocortin 1-receptor in regulating feather color pigmentation in the chicken. Biochimica et Biophysica Acta 1308, 164-8. (Pubitemid 26252779)
34. Weaver W.D. Jr, (2002) Poultry housing. In: Commercial Chicken Meat and Egg Production, 5th edition (Ed. by, D.D. Bell, &, W.D. Weaver Jr,), pp. 101-11. Kluwer Academic Publishers Press, MA.
35. Yang C.Y., Shieh H.K., Lin Y.L., &, Chang P.C., (1999) Newcastle disease virus isolated from recent outbreaks in Taiwan phylogenetically related to viruses (genotype VII) from recent outbreaks in Western Europe. Avian Diseases 43, 125-30. (Pubitemid 29186591)