Validation of high throughput methods for tissue disruption and nucleic acid extraction for ranaviruses (family Iridoviridae)

Aquaculture

Volumn 338-341, Issue , 2012, Pages 23-28

  Rimmer, Anneke E ^a   Becker, Joy A ^a   Tweedie, Alison ^a   Whittington, Richard J ^a  

^a UNIVERSITY OF SYDNEY   (Australia)

Author keywords

Automation; DNA virus; Extraction; Homogenisation; Iridovirus; Nucleic acid

Indexed keywords

ANTIGEN; AUTOMATION; DETECTION METHOD; EXPERIMENTAL CULTURE; EXTRACTION METHOD; FISH CULTURE; HOMOGENEITY; NUCLEIC ACID; ORNAMENTAL SPECIES; PERCID; POLYMERASE CHAIN REACTION; VIRAL DISEASE; VIRUS;

DNA VIRUSES; EPIZOOTIC HAEMATOPOIETIC NECROSIS VIRUS; IRIDOVIRIDAE; IRIDOVIRUS; LEPOMIS MACROCHIRUS; PERCA FLUVIATILIS;

EID: 84858336093     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2012.01.012     Document Type: Article

References (33)

1. Ariel E., Nicolajsen N., Christophersen M.-B., Holopainen R., Tapiovaara H., Bang Jensen B. Propagation and isolation of ranaviruses in cell culture. Aquaculture 2009, 294:159-164.
2. Arimura T., Helbling-Leclerc A., Massart C., Varnous S., Niel F., Lacene E., Fromes Y., Toussaint M., Mura A.-M., Keller D.I., Amthor H., Isnard R., Malissen M., Schwartz K., Bonne G. Mouse model carrying H222P-Lmna mutation develops muscular dystrophy and dilated cardiomyopathy similar to human striated muscle laminopathies. Hum. Mol. Genet. 2005, 14:155-169.
3. Ashburner L.D. Lymphocystis in paradise fish (Macropodus opercularis) in Australia. Aust. Vet. J. 1975, 51:448-449.
4. Beuselinck K., van Ranst M., van Eldere J. Automated extraction of viral-pathogen RNA and DNA for high-throughput quantitative real-time PCR. J. Clin. Microbiol. 2005, 43:5541-5546.
5. Dundas N., Leos N.K., Mitui M., Revell P., Rogers B.B. Comparison of automated nucleic acid extraction methods with manual extraction. J. Mol. Diagn. 2008, 10:311-316.
6. Durham P.J.K., Allanson M.J., Hutchinson W.G. Lymphocystis disease in snapper (Pagrus auratus) from Spencer Gulf, South Australia. Aust. Vet. J. 1996, 74:312-313.
7. Eaton B.T., Hyatt A.D., Hengstberger S. Epizootic haematopoietic necrosis virus: purification and classification. J. Fish Dis. 1991, 14:157-169.
8. Guo Y.X., Chan S.-W., Kwang J. Membrane association of greasy grouper nervous necrosis virus protein A and characterization of its mitochondrial localization targeting signal. J. Virol. 2004, 78:6498-6508.
9. Hedrick R.P., McDowell T., Rosemark R., Aronstein D., Chanc L. A comparison of four apparatuses for recovering infectious pancreatic necrosis virus from rainbow trout. Prog. Fish-Cult. 1986, 48:47-51.
10. Hedrick R.P., McDowell T.S., Ahne W., Torhy C., de Kinkelin P. Properties of three iridovirus-like agents associated with systemic infections of fish. Dis. Aquat. Organ. 1992, 13:203-209.
11. Hick P., Tweedie A., Whittington R. Preparation of fish tissues for optimal detection of betanodavirus. Aquaculture 2010, 310:20-26.
12. Hourfar M.K., Schmidt M., Seifried E., Roth W.K. Evaluation of an automated high-volume extraction method for viral nucleic acids in comparison to a manual procedure with preceding enrichment. Vox Sang. 2005, 89:71-76.
13. Jewell J.E., Conner M.M., Wolfe L.L., Miller M.W., Williams E.S. Low frequency of PrP genotype 225SF among free-ranging mule deer (Odocoileus hemionus) with chronic wasting disease. J. Gen. Virol. 2005, 86:2127-2134.
14. Klempa B., Stanko M., Labuda M., Ulrich R., Meisel H., Kruger D.H. Central European Dobrava hantavirus isolate from a striped field mouse (Apodemus agrarius). J. Clin. Microbiol. 2005, 43:2756-2763.
15. Knepp J.H., Geahr M.A., Forman M.S., Valsamakis A. Comparison of automated and manual nucleic acid extraction methods for detection of enterovirus RNA. J. Clin. Microbiol. 2003, 41:3532-3536.
16. Langdon J.S. Experimental transmission and pathogenicity of epizootic haematopoietic necrosis virus (EHNV) in redfin perch, Perca fluviatilis L., and 11 other teleosts. J. Fish Dis. 1989, 12:295-310.
17. Langdon J.S., Humphrey J.D., Williams L.M., Hyatt A.D., Westbury H.A. First virus isolation from Australian fish: an iridovirus-like pathogen from redfin perch Perca fluviatilis L. J. Fish Dis. 1986, 9:263-268.
18. Liu W., Hsu C.-H., Hong Y.-R., Wu S.-C., Wang C.-H., Wu Y.-M., Chao C.-B., Lin C.-S. Early endocytosis pathways in SSN-1 cells infected by dragon grouper nervous necrosis virus. J. Gen. Virol. 2005, 86:2553-2561.
19. Marsh I.B., Whittington R.J., O'Rourke B., Hyatt A.D., Chisholm O. Rapid differentiation of Australian, European and American ranaviruses based on variation in major capsid protein gene sequence. Mol. Cell. Probes 2002, 16:137-151.
20. OIE-World Organisation for Animal Health Epizootic haematopoietic necrosis. Manual of Diagnostic Tests for Aquatic Animals 2009, Chapter 2.3.1. (Online) www.oie.int., Paris, France. OIE (Ed.).
21. Pallister J., Gould A., Harrison D., Hyatt A., Jancovich J., Heine H. Development of real-time PCR assays for the detection and differentiation of Australian and European ranaviruses. J. Fish Dis. 2007, 30:427-438.
22. Petrich A., Mahony J., Chong S., Broukhanski G., Gharabaghi F., Johnson G., Louie L., Luinstra K., Willey B., Akhaven P., Chui L., Jamieson F., Louie M., Mazzulli T., Tellier R., Smieja M., Cai W., Chernesky M., Richardson S.E. Multicenter comparison of nucleic acid extraction methods for detection of severe acute respiratory syndrome coronavirus RNA in stool specimens. J. Clin. Microbiol. 2006, 44:2681-2688.
23. Rasmussen T.B., Uttenthal Å., Hakhverdyan M., Belák S., Wakeley P.R., Reid S.M., Ebert K., King D.P. Evaluation of automated nucleic acid extraction methods for virus detection in a multicenter comparative trial. J. Virol. Methods 2009, 155:87-90.
24. Reed L.J., Muench H. A simple method of estimating fifty per cent endpoints. Am. J. Hyg. 1938, 27:493-497.
25. Schuurman T., van Breda A., de Boer R., Kooistra-Smid M., Beld M., Savelkoul P., Boom R. Reduced PCR sensitivity due to impaired DNA recovery with the MagNA Pure LC total nucleic acid isolation kit. J. Clin. Microbiol. 2005, 43:4616-4622.
26. Scupham A.J., Presley L.L., Wei B., Bent E., Griffith N., McPherson M., Zhu F., Oluwadara O., Rao N., Braun J., Borneman J. Abundant and diverse fungal microbiota in the murine intestine. Appl. Environ. Microbiol. 2006, 72:793-801.
27. Smail D.A., Burnside K., Watt A., Munro E.S. Enhanced cell culture isolation of Infectious Pancreatic Necrosis Virus from kidney tissue of carrier Atlantic salmon (Salmo salar L.) using sonication of the cell harvest. Bull. Eur. Assoc. Fish. Pathol. 2003, 23:250-254.
28. Speare R., Smith J.R. An iridovirus-like agent isolated from the ornate burrowing frog Limnodynastes ornatus in northern Australia. Dis. Aquat. Organ. 1992, 14:51-57.
29. Tang Y.-W., Sefers S.E., Li H., Kohn D.J., Procop G.W. Comparative evaluation of three commercial systems for nucleic acid extraction from urine specimens. J. Clin. Microbiol. 2005, 43:4830-4833.
30. Whittington R.J., Steiner K.A. Epizootic haematopoietic necrosis virus (EHNV): improved ELISA for detection in fish tissues and cell cultures and an efficient method for release of antigen from tissues. J. Virol. Methods 1993, 43:205-220.
31. Whittington R.J., Becker J.A., Dennis M.M. Iridovirus infections in finfish - critical review with emphasis on ranaviruses. J. Fish Dis. 2010, 33:95-122.
32. Williams T., Barbosa-Solomieu V., Chinchar V.G., Karl M., Aaron J.S. A decade of advances in iridovirus research. Adv. Virus Res. 2005, 65:173-248.
33. Wilson D., Yen-Lieberman B., Reischl U., Warshawsky I., Procop G.W. Comparison of five methods for extraction of Legionella pneumophila from respiratory specimens. J. Clin. Microbiol. 2004, 42:5913-5916.