Short noncontractile tail machines: Adsorption and DNA delivery by podoviruses

Advances in Experimental Medicine and Biology

Volumn 726, Issue , 2012, Pages 143-179

  Casjens, Sherwood R ^a   Molineux, Ian J ^b  

^a UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF TEXAS AT AUSTIN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIUM LIPOPOLYSACCHARIDE; GLYCOPROTEIN GP 16; GLYCOPROTEIN GP 20; GLYCOPROTEIN GP 7; UNCLASSIFIED DRUG; VIRUS DNA; VIRUS GLYCOPROTEIN; VIRUS SPIKE PROTEIN;

ADSORPTION KINETICS; AMINO ACID SEQUENCE; ARTICLE; BACILLUS PHAGE; BACTERIAL SUPERINFECTION; BACTERIOPHAGE; BACTERIOPHAGE T7; BINDING SITE; CELL SURFACE; DNA PACKAGING; DNA STRUCTURE; ENZYME ACTIVITY; GENE TARGETING; GENETIC VARIABILITY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN CLEAVAGE; PROTEIN DEGRADATION; PROTEIN FUNCTION; PROTEIN INTERACTION; PROTEIN LOCALIZATION; PROTEIN SECRETION; RECEPTOR BINDING; SEQUENCE HOMOLOGY; VIRION; VIRUS ATTACHMENT; VIRUS CELL INTERACTION; VIRUS ENTRY; VIRUS MORPHOLOGY; VIRUS SPIKE;

ADSORPTION; BACTERIA; BIOLOGICAL EVOLUTION; DNA, VIRAL; GENOME, VIRAL; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; PODOVIRIDAE; PROTEIN BINDING; PROTEIN CONFORMATION; VIRAL PROTEINS; VIRION;

CAUDOVIRALES; NEGIBACTERIA; PODOVIRIDAE;

EID: 84858166155     PISSN: 00652598     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4614-0980-9_7     Document Type: Article

References (222)

1. Adam G, Delbr'ck M (1968) Reduction in dimensionality in biological diffusion processes. In: Rich A, Davidson N (eds) Structural chemisty and molecular biology. W. H. Freeman and Company, San Francisco, pp 198-215
2. Agirrezabala X, Martin-Benito J, Caston JR, Miranda R, Valpuesta JM, Carrascosa JL (2005) Maturation of phage T7 involves structural modification of both shell and inner core components. EMBO J 24:3820-3829 (Pubitemid 41581697)
3. Agirrezabala X, Velazquez-Muriel JA, Gomez-Puertas P, Scheres SH, Carazo JM, Carrascosa JL (2007) Quasi-atomic model of bacteriophage T7 procapsid shell: insights into the structure and evolution of a basic fold. Structure 15:461-472 (Pubitemid 46553832)
4. Alcorlo M, Gonzalez-Huici V, Hermoso JM, Meijer WJ, Salas M (2007) The phage f 29 membrane protein p16.7, involved in DNA replication, is required for efficient ejection of the viral genome. J Bacteriol 189:5542-5549 (Pubitemid 47206399)
5. Allison GE, Verma NK (2000) Serotype-converting bacteriophages and O-antigen modification in Shigella flexneri . Trends Microbiol 8:17-23 (Pubitemid 30066379)
6. Anand VS, Patel SS (2006) Transient state kinetics of transcription elongation by T7 RNA polymerase. J Biol Chem 281:35677-35685 (Pubitemid 46041298)
7. Andres D, Hanke C, Baxa U, Seul A, Barbirz S, Seckler R. (2010) Tailspike interactions with lipopolysaccharide effect DNA ejection from phage P22 particles in vitro. J Biol Chem 285:36768-36775
8. Astumian RD (1997) Thermodynamics and kinetics of a Brownian motor. Science 276:917-922 (Pubitemid 27209083)
9. Bandyopadhyay PN, Das Gupta B, Joshi A, Chakravorty M (1979) Is the injection of DNA enough to cause bacteriophage P22-induced changes in the cellular transport process of Salmonella typhimurium ? J Virol 32:98-101 (Pubitemid 10250017)
10. Baptista C, Santos MA, Sao-Jose C (2008) Phage SPP1 reversible adsorption to Bacillus subtilis cell wall teichoic acids accelerates virus recognition of membrane receptor YueB. J Bacteriol 190:4989-4996 (Pubitemid 351991067)
11. Barbirz S, Muller JJ, Uetrecht C, Clark AJ, Heinemann U, Seckler R (2008) Crystal structure of Escherichia coli phage HK620 tailspike: podoviral tailspike endoglycosidase modules are evolutionarily related. Mol Microbiol 69:303-316 (Pubitemid 351988025)
12. Baumann RG, Mullaney J, Black LW (2006) Portal fusion protein constraints on function in DNA packaging of bacteriophage T4. Mol Microbiol 61:16-32
13. Baxa U, Steinbacher S, Miller S, Weintraub A, Huber R, Seckler R (1996) Interactions of phage P22 tails with their cellular receptor, Salmonella O-antigen polysaccharide. Biophys J 71:2040-2048 (Pubitemid 26325982)
14. Bayer M, Iberer R, Bischof K, Rassi E, Stabentheiner E, Zellnig G, Koraimann G (2001) Functional and mutational analysis of p19, a DNA transfer protein with muramidase activity. J Bacteriol 183:3176-3183 (Pubitemid 32433536)
15. Bayer ME, Thurow H, Bayer MH (1979) Penetration of the polysaccharide capsule of Escherichia coli (Bi161/42) by bacteriophage K29. Virology 94:95-118 (Pubitemid 9164786)
16. Bayer ME, Takeda K, Uetake H (1980) Effects of receptor destruction by Salmonella bacteriophages epsilon 15 and c341. Virology 105:328-337 (Pubitemid 10047144)
17. Bayer ME, Bayer MH (1981) Fast responses of bacterial membranes to virus adsorption: a fluorescence study. Proc Natl Acad Sci USA 78:5618-5622 (Pubitemid 12245201)
18. Benson NR, Roth J (1997) A Salmonella phage-P22 mutant defective in abortive transduction. Genetics 145:17-27 (Pubitemid 27051479)
19. Berg HC, Purcell EM (1977) Physics of chemoreception. Biophys J 20:193-219 (Pubitemid 8220672)
20. Berget PB, Poteete AR (1980) Structure and functions of the bacteriophage P22 tail protein. J Virol 34:234-243 (Pubitemid 10149399)
21. Bhardwaj A, Olia AS, Walker-Kopp N, Cingolani G (2007) Domain organization and polarity of tail needle gp26 in the portal vertex structure of bacteriophage P22. J Mol Biol 371:374-387 (Pubitemid 47048275)
22. Bienkowska-Szewczyk K, Taylor A (1980) Murein transglycosylase from phage lambda lysate. Purification and properties. Biochim Biophys Acta 615:489-496 (Pubitemid 11191815)
23. Botstein D, Waddell CH, King J (1973) Mechanism of head assembly and DNA encapsulation in Salmonella phage P22. I. Genes, proteins, structures and DNA maturation. J Mol Biol 80:669-695
24. Bradley DE (1967) Ultrastructure of bacteriophage and bacteriocins. Bacteriol Rev 31:230-314
25. Bull JJ, Vimr ER, Molineux IJ (2010) A tale of tails: Sialidase is key to success in a model of phage therapy against K1-capsulated Escherichia coli . Virology 398:79-86
26. Canchaya C, Desiere F, McShan WM, Ferretti JJ, Parkhill J, Brussow H (2002) Genome analysis of an inducible prophage and prophage remnants integrated in the Streptococcus pyogenes strain SF370. Virology 302:245-258 (Pubitemid 35373853)
27. Cardarelli L, Lam R, Tuite A, Baker LA, Sadowski PD, Radford DR, Rubinstein JL, Battaile KP, Chirgadze N, Maxwell KL, Davidson AR (2010) The crystal structure of bacteriophage HK97 gp6: defining a large family of head-tail connector proteins. J Mol Biol 395:754-768
28. Casjens S, King J (1974) P22 morphogenesis. I: Catalytic scaffolding protein in capsid assembly. J Supramol Struct 2:202-224
29. Casjens S, Wyckoff E, Hayden M, Sampson L, Eppler K, Randall S, Moreno E, Serwer P (1992) Bacteriophage P22 portal protein is part of the gauge that regulates packing density of intravirion DNA. J Mol Biol 224:1055-1074
30. Casjens S, Thuman-Commike P (2011) Evolution of mosaically related tailed phage genomes seen through the lens of phage P22 virion assembly. Virology 411:393-415
31. Cerritelli ME, Cheng N, Rosenberg AH, McPherson CE, Booy FP, Steven AC (1997) Encapsidated conformation of bacteriophage T7 DNA. Cell 91:271-280 (Pubitemid 27456394)
32. Chang CY, Kemp P, Molineux IJ (2010) Gp15 and gp16 cooperate in translocating bacteriophage T7 DNA into the infected cell. Virology 398:176-186
33. Chang J, Weigele P, King J, Chiu W, Jiang W (2006) Cryo-EM asymmetric reconstruction of bacteriophage P22 reveals organization of its DNA packaging and infecting machinery. Structure 14:1073-1082 (Pubitemid 43831665)
34. Choi KH, McPartland J, Kaganman I, Bowman VD, Rothman-Denes LB, Rossmann MG (2008) Insight into DNA and protein transport in double-stranded DNA viruses: the structure of bacteriophage N4. J Mol Biol 378:726-736
35. Chopin A, Deveau H, Ehrlich SD, Moineau S, Chopin MC (2007) KSY1, a lactococcal phage with a T7-like transcription. Virology 365:1-9 (Pubitemid 46907239)
36. Cohen DN, Erickson SE, Xiang Y, Rossmann MG, Anderson DL (2008) Multifunctional roles of a bacteriophage f 29 morphogenetic factor in assembly and infection. J Mol Biol 378:804-817
37. Comolli LR, Spakowitz AJ, Siegerist CE, Jardine PJ, Grimes S, Anderson DL, Bustamante C, Downing KH (2008) Three-dimensional architecture of the bacteriophage f 29 packaged genome and elucidation of its packaging process. Virology 371:267-277 (Pubitemid 351173222)
38. Dai W, Hodes A, Hui WH, Gingery M, Miller JF, Zhou ZH (2010) Three-dimensional structure of tropism-switching Bordetella bacteriophage. Proc Natl Acad Sci USA 107:4347-4352
39. de Frutos M, Letellier L, Raspaud E (2005) DNA ejection from bacteriophage T5: analysis of the kinetics and energetics. Biophys J 88:1364-1370 (Pubitemid 40975963)
40. Dobbins AT, George M Jr, Basham DA, Ford ME, Houtz JM, Pedulla ML, Lawrence JG, Hatfull GF, Hendrix RW (2004) Complete genomic sequence of the virulent Salmonella bacteriophage SP6. J Bacteriol 186:1933-1944 (Pubitemid 38381181)
41. Doulatov S, Hodes A, Dai L, Mandhana N, Liu M, Deora R, Simons RW, Zimmerly S, Miller JF (2004) Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements. Nature 431: 476-481 (Pubitemid 39329589)
42. Drexler K, Dannull J, Hindennach I, Mutschler B, Henning U (1991) Single mutations in a gene for a tail fiber component of an Escherichia coli phage can cause an extension from a protein to a carbohydrate as a receptor. J Mol Biol 219:655-663 (Pubitemid 121003540)
43. Earnshaw W, Casjens S (1980) DNA packaging by the double-stranded DNA bacteriophages. Cell 21:319-331 (Pubitemid 10047085)
44. Ebel-Tsipis J, Botstein D (1971) Superinfection exclusion by P22 prophage in lysogens of Salmonella typhimurium . 1. Exclusion of generalized transducing particles. Virology 45:629-637
45. Effantin G, Boulanger P, Neumann E, Letellier L, Conway JF (2006) Bacteriophage T5 structure reveals similarities with HK97 and T4 suggesting evolutionary relationships. J Mol Biol 361:993-1002 (Pubitemid 44189441)
46. Emrich J, Streisinger G (1968) The role of phage lysozyme in the life cycle of phage T4. Virology 36:387-391
47. Evilevitch A, Lavelle L, Knobler CM, Raspaud E, Gelbart WM (2003) Osmotic pressure inhibition of DNA ejection from phage. Proc Natl Acad Sci USA 100:9292-9295 (Pubitemid 37033922)
48. Falco SC, Laan KV, Rothman-Denes LB (1977) Virion-associated RNA polymerase required for bacteriophage N4 development. Proc Natl Acad Sci USA 74:520-523 (Pubitemid 8038833)
49. Falco SC, Zehring W, Rothman-Denes LB (1980) DNA-dependent RNA polymerase from bacteriophage N4 virions. Purification and characterization. J Biol Chem 255:4339-4347 (Pubitemid 10051113)
50. Feynman RP (1963) The Feynman lectures on physics. Addison-Wesley, Reading, MA
51. Filali Maltouf A, Labedan B (1983) Host cell metabolic energy is not required for injection of bacteriophage T5 DNA. J Bacteriol 153:124-133 (Pubitemid 13119848)
52. Filali Maltouf AK, Labedan B (1985) The energetics of the injection process of bacteriophage lambda DNA and the role of the ptsM/ pel-encoded protein. Biochem Biophys Res Commun 130:1093-1101
53. Fokine A, Chipman PR, Leiman PG, Mesyanzhinov VV, Rao VB, Rossmann MG (2004) Molecular architecture of the prolate head of bacteriophage T4. Proc Natl Acad Sci USA 101:6003-6008 (Pubitemid 38520518)
54. Fraser JS, Yu Z, Maxwell KL, Davidson AR (2006) Ig-like domains on bacteriophages: a tale of promiscuity and deceit. J Mol Biol 359:496-507
55. Garcia L, Molineux I (1995) Incomplete entry of bacteriophage T7 DNA into F plasmid-containing Escherichia coli . J Bacteriol 177:4077-4083
56. Garcia LR, Molineux IJ (1996) Transcription-independent DNA translocation of bacteriophage T7 DNA into Escherichia coli . J Bacteriol 178:6921-6929 (Pubitemid 26404970)
57. Garcia LR, Molineux IJ (1999) Translocation and specific cleavage of bacteriophage T7 DNA in vivo by EcoKI. Proc Natl Acad Sci USA 96:12430-12435 (Pubitemid 29513519)
58. George DG, Yeh LS, Barker WC (1983) Unexpected relationships between bacteriophage lambda hypothetical proteins and bacteriophage T4 tail-fiber proteins. Biochem Biophys Res Commun 115:1061-1068
59. Goldberg EB, Grinius L, Letellier L (1994) Recognition, attachment and injection. In: Karam J (ed) The molecular biology of bacteriophage T4. ASM Press, Washiington, DC, pp 347-356
60. Gonzalez-Huici V, Alcorlo M, Salas M, Hermoso JM (2004a) Binding of phage f 29 architectural protein p6 to the viral genome: evidence for topological restriction of the phage linear DNA. Nucleic Acids Res 32:3493-3502 (Pubitemid 39117466)
61. Gonzalez-Huici V, Salas M, Hermoso JM (2004b) The push-pull mechanism of bacteriophage f 29 DNA injection. Mol Microbiol 52:529-540 (Pubitemid 38520720)
62. Gonzalez-Huici V, Salas M, Hermoso JM (2006) Requirements for Bacillus subtilis bacteriophage f 29 DNA ejection. Gene 374:19-25
63. Grayson P, Evilevitch A, Inamdar MM, Purohit PK, Gelbart WM, Knobler CM, Phillips R (2006) The effect of genome length on ejection forces in bacteriophage lambda. Virology 348:430-436
64. Grayson P, Han L, Winther T, Phillips R (2007) Real-time observations of single bacteriophage lambda DNA ejections in vitro . Proc Natl Acad Sci USA 104:14652-14657 (Pubitemid 350003198)
65. Grayson P, Molineux IJ (2007) Is phage DNA 'injected' into cells-biologists and physicists can agree. Curr Opin Microbiol 10:401-409 (Pubitemid 47404949)
66. Haggard-Ljungquist E, Halling C, Calendar R (1992) DNA sequences of the tail fiber genes of bacteriophage P2: evidence for horizontal transfer of tail fiber genes among unrelated bacteriophages. J Bacteriol 174:1462-1477
67. Hanfling P, Shashkov AS, Jann B, Jann K (1996) Analysis of the enzymatic cleavage (beta elimination) of the capsular K5 polysaccharide of Escherichia coli by the K5-specific coliphage: reexamination. J Bacteriol 178:4747-4750 (Pubitemid 26262271)
68. Haynes LL, Rothman-Denes LB (1985) N4 virion RNA polymerase sites of transcription initiation. Cell 41:597-605 (Pubitemid 16219429)
69. Heller K, Braun V (1979) Accelerated adsorption of bacteriophage T5 to Escherichia coli F, resulting from reversible tail fiber-lipopolysaccharide binding. J Bacteriol 139:32-38 (Pubitemid 9227489)
70. Hendrix R, Casjens S (2005) Podoviridae. In: Fauquet C, Mayo M, Maniloff J, Desselberger U, Ball A (eds) Virus taxonomy. Elsevier, Amsterdam, pp 71-79
71. Hendrix RW, Duda RL (1992) Bacteriophage lambda PaPa: not the mother of all lambda phages. Science 258: 1145-1148
72. Hershey AD, Chase M (1952) Independent functions of viral protein and nucleic acid in growth of bacteriophge. J Gen Physiol 36:39-56
73. Hershey AD (1955) An upper limit to the protein content of the germinal substance of bacteriophage T2. Virology 1:108-127
74. Hofer B, Ruge M, Dreiseikelmann B (1995) The superinfection exclusion gene (sieA) of bacteriophage P22: identifi-cation and overexpression of the gene and localization of the gene product. J Bacteriol 177:3080-3086
75. Hoffman B, Levine M (1975a) Bacteriophage P22 virion protein which performs an essential early function. I. Analysis of 16-ts mutants. J Virol 16:1536-1546
76. Hoffman B, Levine M (1975b) Bacteriophage P22 virion protein which performs an essential early function. II. Characterization of the gene 16 function. J Virol 16:1547-1559
77. Hud NV, Downing KH (2001) Cryoelectron microscopy of lambda phage DNA condensates in vitreous ice: the fine structure of DNA toroids. Proc Natl Acad Sci USA 98:14925-14930 (Pubitemid 34013946)
78. Hugel T, Michaelis J, Hetherington CL, Jardine PJ, Grimes S, Walter JM, Falk W, Anderson DL, Bustamante C (2007) Experimental test of connector rotation during DNA packaging into bacteriophage f 29 capsids. PLoS Biol 5:e59
79. Isidro A, Santos MA, Henriques AO, Tavares P (2004) The high-resolution functional map of bacteriophage SPP1 portal protein. Mol Microbiol 51:949-962 (Pubitemid 38270791)
80. Israel V (1976) Role of the bacteriophage P22 tail in the early stages of infection. J Virol 18:361-364
81. Israel V (1977) E proteins of bacteriophage P22. I. Identification and ejection from wild-type and defective particles. J Virol 23:91-97 (Pubitemid 8141965)
82. Israel V (1978) A model for the adsorption of phage P22 to Salmonella typhimurium . J Gen Virol 40:669-673 (Pubitemid 9014940)
83. Iwashita S, Kanegasaki S (1976) Deacetylation reaction catalyzed by Salmonella phage c341 and its baseplate parts. J Biol Chem 251:5361-5365
84. Jeembaeva M, Jonsson B, Castelnovo M, Evilevitch A (2010) DNA heats up: energetics of genome ejection from phage revealed by isothermal titration calorimetry. J Mol Biol 395:1079-1087
85. Jiang W, Li Z, Zhang Z, Baker ML, Prevelige PE Jr, Chiu W (2003) Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions. Nat Struct Biol 10:131-135 (Pubitemid 36177094)
86. Jiang W, Chang J, Jakana J, Weigele P, King J, Chiu W (2006) Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus. Nature 439:612-616 (Pubitemid 43185387)
87. Jiang W, Baker ML, Jakana J, Weigele PR, King J, Chiu W (2008) Backbone structure of the infectious epsilon15 virus capsid revealed by electron cryomicroscopy. Nature 451:1130-1134 (Pubitemid 351317451)
88. Johnson JE, Chiu W (2007) DNA packaging and delivery machines in tailed bacteriophages. Curr Opin Struct Biol 17:237-243 (Pubitemid 46575256)
89. Joshi A, Siddiqi JZ, Rao GR, Chakravorty M (1982) MB78, a virulent bacteriophage of Salmonella typhimurium . J Virol 41:1038-1043 (Pubitemid 12180232)
90. Kanamaru S, Gassner NC, Ye N, Takeda S, Arisaka F (1999) The C-terminal fragment of the precursor tail lysozyme of bacteriophage T4 stays as a structural component of the baseplate after cleavage. J Bacteriol 181:2739-2744 (Pubitemid 29211087)
91. Kanamaru S, Leiman PG, Kostyuchenko VA, Chipman PR, Mesyanzhinov VV, Arisaka F, Rossmann MG (2002) Structure of the cell-puncturing device of bacteriophage T4. Nature 415:553-557 (Pubitemid 34130613)
92. Kanegasaki S, Wright A (1973) Studies on the mechanism of phage adsorption: interaction between phage epsilon15 and its cellular receptor. Virology 52:160-173
93. Kazmierczak K, Rothman-Denes L (2006) Bacteriophage N4. In: Calendar R (ed) The bacteriophages. Oxford University Press, Oxford, pp 302-314
94. Kazmierczak KM, Davydova EK, Mustaev AA, Rothman-Denes LB (2002) The phage N4 virion RNA polymerase catalytic domain is related to single-subunit RNA polymerases. EMBO J 21:5815-5823 (Pubitemid 35315279)
95. Kemp P, Gupta M, Molineux IJ (2004) Bacteriophage T7 DNA ejection into cells is initiated by an enzyme-like mechanism. Mol Microbiol 53:1251-1265 (Pubitemid 39120444)
96. Kemp P, Garcia LR, Molineux IJ (2005) Changes in bacteriophage T7 virion structure at the initiation of infection. Virology 340:307-317 (Pubitemid 41317504)
97. Kiino DR, Rothman-Denes LB (1989) Genetic analysis of bacteriophage N4 adsorption. J Bacteriol 171:4595-4602 (Pubitemid 19209053)
98. Kiino DR, Licudine R, Wilt K, Yang DH, Rothman-Denes LB (1993a) A cytoplasmic protein, NfrC, is required for bacteriophage N4 adsorption. J Bacteriol 175:7074-7080 (Pubitemid 23322460)
99. Kiino DR, Singer MS, Rothman-Denes LB (1993b) Two overlapping genes encoding membrane proteins required for bacteriophage N4 adsorption. J Bacteriol 175:7081-7085 (Pubitemid 23322461)
100. King J, Lenk EV, Botstein D (1973) Mechanism of head assembly and DNA encapsulation in Salmonella phage P22. II. Morphogenetic pathway. J Mol Biol 80:697-731
101. King MR, Vimr RP, Steenbergen SM, Spanjaard L, Plunkett G 3rd, Blattner FR, Vimr ER (2007) Escherichia coli K1-specific bacteriophage CUS-3 distribution and function in phase-variable capsular polysialic acid O acetylation. J Bacteriol 189:6447-6456 (Pubitemid 47378653)
102. Krawiec S, Jimenez F, Garcia JA, Villanueva N, Sogo J, Salas M (1981) The orderly, in vitro emergence of DNA from bacteriophage f 29 particles. Virology 111:440-454 (Pubitemid 11064043)
103. Kropinski AM (2000) Sequence of the genome of the temperate, serotype-converting, Pseudomonas aeruginosa bacteriophage D3. J Bacteriol 182:6066-6074
104. Kropinski AM, Kovalyova IV, Billington SJ, Patrick AN, Butts BD, Guichard JA, Pitcher TJ, Guthrie CC, Sydlaske AD, Barnhill LM, Havens KA, Day KR, Falk DR, McConnell MR (2007) The genome of epsilon15, a serotypeconverting, Group E1 Salmonella enterica-specific bacteriophage. Virology 369:234-244 (Pubitemid 350087186)
105. Kuhn A, Kellenberger E (1985) Productive phage infection in Escherichia coli with reduced internal levels of the major cations. J Bacteriol 163:906-912 (Pubitemid 15230721)
106. Kuhn HM, Meier-Dieter U, Mayer H (1988) ECA, the enterobacterial common antigen. FEMS Microbiol Rev 4:195-222
107. Labedan B, Goldberg EB (1979) Requirement for membrane potential in injection of phage T4 DNA. Proc Natl Acad Sci USA 76:4669-4673 (Pubitemid 9253950)
108. Labedan B, Heller KB, Jasaitis AA, Wilson TH, Goldberg EB (1980) A membrane potential threshold for phage T4 DNA injection. Biochem Biophys Res Commun 93:625-630 (Pubitemid 10092452)
109. Lander GC, Tang L, Casjens SR, Gilcrease EB, Prevelige P, Poliakov A, Potter CS, Carragher B, Johnson JE (2006) The structure of an infectious P22 virion shows the signal for headful DNA packaging. Science 312: 1791-1795 (Pubitemid 43962896)
110. Lander GC, Khayat R, Li R, Prevelige PE, Potter CS, Carragher B, Johnson JE (2009) The P22 tail machine at subnanometer resolution reveals the architecture of an infection conduit. Structure 17:789-799
111. Landstrom J, Nordmark EL, Eklund R, Weintraub A, Seckler R, Widmalm G (2008) Interaction of a Salmonella enteritidis O-antigen octasaccharide with the phage P22 tailspike protein by NMR spectroscopy and docking studies. Glycoconj J 25:137-143 (Pubitemid 351238190)
112. Lanni YT (1968) First-step-transfer deoxyribonucleic acid of bacteriophage T5. Bacteriol Rev 32:227-242
113. Lavigne R, Burkal'tseva MV, Robben J, Sykilinda NN, Kurochkina LP, Grymonprez B, Jonckx B, Krylov VN, Mesyanzhinov VV, Volckaert G (2003) The genome of bacteriophage f KMV, a T7-like virus infecting Pseudomonas aeruginosa. Virology 312:49-59 (Pubitemid 36918459)
114. Lavigne R, Briers Y, Hertveldt K, Robben J, Volckaert G (2004) Identification and characterization of a highly thermostable bacteriophage lysozyme. Cell Mol Life Sci 61:2753-2759 (Pubitemid 40022438)
115. Lavigne R, Seto D, Mahadevan P, Ackermann HW, Kropinski AM (2008) Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools. Res Microbiol 159:406-414
116. Lebedev AA, Krause MH, Isidro AL, Vagin AA, Orlova EV, Turner J, Dodson EJ, Tavares P, Antson AA (2007) Structural framework for DNA translocation via the viral portal protein. EMBO J 26:1984-1994 (Pubitemid 46624054)
117. Leforestier A, Brasiles S, de Frutos M, Raspaud E, Letellier L, Tavares P, Livolant F (2008) Bacteriophage T5 DNA ejection under pressure. J Mol Biol 384:730-739
118. Leforestier A, Livolant F (2009) Structure of toroidal DNA collapsed inside the phage capsid. Proc Natl Acad Sci USA 106:9157-9162
119. Leforestier A, Livolant F (2010) The bacteriophage genome undergoes a succession of intracapsid phase transitions upon DNA ejection. J Mol Biol 396:384-395
120. Leiman PG, Battisti AJ, Bowman VD, Stummeyer K, Muhlenhoff M, Gerardy-Schahn R, Scholl D, Molineux IJ (2007) The structures of bacteriophages K1E and K1-5 explain processive degradation of polysaccharide capsules and evolution of new host specificities. J Mol Biol 371:836-849 (Pubitemid 47087828)
121. Leiman PG, Molineux IJ (2008) Evolution of a new enzyme activity from the same motif fold. Mol Microbiol 69:287-290 (Pubitemid 351988006)
122. Lenk E, Casjens S, Weeks J, King J (1975) Intracellular visualization of precursor capsids in phage P22 mutant infected cells. Virology 68:182-199
123. Lin L (1992) Study of bacteriophage T7 gene 5.9 and gene 5.5. Ph.D. dissertation. SUNY, Sonybrook, New York
124. Lindberg AA, Sarvas M, Makela PH (1970) Bacteriophage attachment to the somatic antigen of Salmonella : Effect of O-specific structures in leaky R mutants and S, T1 Hybrids. Infect Immun 1:88-97
125. Lipinska B, Rao AS, Bolten BM, Balakrishnan R, Goldberg EB (1989) Cloning and identification of bacteriophage T4 gene 2 product gp2 and action of gp2 on infecting DNA in vivo . J Bacteriol 171:488-497
126. Liu M, Deora R, Doulatov SR, Gingery M, Eiserling FA, Preston A, Maskell DJ, Simons RW, Cotter PA, Parkhill J, Miller JF (2002) Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage. Science 295:2091-2094 (Pubitemid 34229474)
127. Liu M, Gingery M, Doulatov SR, Liu Y, Hodes A, Baker S, Davis P, Simmonds M, Churcher C, Mungall K, Quail MA, Preston A, Harvill ET, Maskell DJ, Eiserling FA, Parkhill J, Miller JF (2004) Genomic and genetic analysis of Bordetella bacteriophages encoding reverse transcriptase-mediated tropism-switching cassettes. J Bacteriol 186:1503-1517 (Pubitemid 38248741)
128. Liu X, Shi M, Kong S, Gao Y, An C (2007) Cyanophage Pf-WMP4, a T7-like phage infecting the freshwater cyanobacterium Phormidium foveolarum : complete genome sequence and DNA translocation. Virology 366:28-39 (Pubitemid 47314399)
129. Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty MT, Schmid MF, Osburne MS, Chisholm SW, Chiu W (2010) Structural changes in a marine podovirus associated with release of its genome into Prochlorococcus . Nat Struct Mol Biol 17:830-836
130. Lu MJ, Henning U (1994) Superinfection exclusion by T-even-type coliphages. Trends Microbiol 2:137-139 (Pubitemid 24104701)
131. Machida Y, Miyake K, Hattori K, Yamamoto S, Kawase M, Iijima S (2000) Structure and function of a novel coliphageassociated sialidase. FEMS Microbiol Lett 182:333-337 (Pubitemid 30006927)
132. Mahony J, McGrath S, Fitzgerald GF, van Sinderen D (2008) Identification and characterization of lactococcalprophage-carried superinfection exclusion genes. Appl Environ Microbiol 74:6206-6215
133. Mangenot S, Hochrein M, Radler J, Letellier L (2005) Real-time imaging of DNA ejection from single phage particles. Curr Biol 15:430-435 (Pubitemid 40323528)
134. McGrath S, Fitzgerald GF, van Sinderen D (2002) Identification and characterization of phage-resistance genes in temperate lactococcal bacteriophages. Mol Microbiol 43:509-520 (Pubitemid 34146739)
135. McPartland J, Rothman-Denes LB (2009) The tail sheath of bacteriophage N4 interacts with the Escherichia coli receptor. J Bacteriol 191:525-532
136. Meijer WJ, Horcajadas JA, Salas M (2001a) f 29 family of phages. Microbiol Mol Biol Rev 65:261-287
137. Meijer WJ, Serna-Rico A, Salas M (2001b) Characterization of the bacteriophage f 29-encoded protein p16.7: a membrane protein involved in phage DNA replication. Mol Microbiol 39:731-746 (Pubitemid 32158151)
138. Miller JL, Le Coq J, Hodes A, Barbalat R, Miller JF, Ghosh P (2008) Selective ligand recognition by a diversitygenerating retroelement variable protein. PLoS Biol 6:e131
139. Mishra P, Prem Kumar R, Ethayathulla AS, Singh N, Sharma S, Perbandt M, Betzel C, Kaur P, Srinivasan A, Bhakuni V, Singh TP (2009) Polysaccharide binding sites in hyaluronate lyase-crystal structures of native phage-encoded hyaluronate lyase and its complexes with ascorbic acid and lactose. FEBS J 276:3392-3402
140. Moak M, Molineux IJ (2000) Role of the Gp16 lytic transglycosylase motif in bacteriophage T7 virions at the initiation of infection. Mol Microbiol 37:345-355 (Pubitemid 30481017)
141. Moak M, Molineux IJ (2004) Peptidoglycan hydrolytic activities associated with bacteriophage virions. Mol Microbiol 51:1169-1183 (Pubitemid 38270807)
142. Moffatt BA, Studier FW (1988) Entry of bacteriophage T7 DNA into the cell and escape from host restriction. J Bacteriol 170:2095-2105
143. Molineux IJ (2001) No syringes please, ejection of phage T7 DNA from the virion is enzyme driven. Mol Microbiol 40:1-8 (Pubitemid 32322857)
144. Molineux IJ (2006) Fifty-three years since Hershey and Chase; much ado about pressure but which pressure is it? Virology 344:221-229 (Pubitemid 41814464)
145. Morais MC, Choi KH, Koti JS, Chipman PR, Anderson DL, Rossmann MG (2005) Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of f 29. Mol Cell 18:149-159
146. Muller JJ, Barbirz S, Heinle K, Freiberg A, Seckler R, Heinemann U (2008) An intersubunit active site between supercoiled parallel beta helices in the trimeric tailspike endorhamnosidase of Shigella flexneri phage Sf6. Structure 16:766-775 (Pubitemid 351615015)
147. Murray NE (2000) Type I restriction systems: sophisticated molecular machines (a legacy of Bertani and Weigle). Microbiol Mol Biol Rev 64:412-434 (Pubitemid 30412679)
148. Olia AS, Al-Bassam J, Winn-Stapley DA, Joss L, Casjens SR, Cingolani G (2006) Binding-induced stabilization and assembly of the phage P22 tail accessory factor gp4. J Mol Biol 363:558-576 (Pubitemid 44436252)
149. Olia AS, Bhardwaj A, Joss L, Casjens S, Cingolani G (2007a) Role of gene 10 protein in the hierarchical assembly of the bacteriophage P22 portal vertex structure. Biochemistry 46:8776-8784 (Pubitemid 47204443)
150. Olia AS, Casjens S, Cingolani G (2007b) Structure of phage P22 cell envelope-penetrating needle. Nat Struct Mol Biol 14:1221-1227
151. Olia A, Prevelige P, Johnson J, Cingolani G (2011) Nat Struct Mol Biol 18:567-603
152. Olia AS, Casjens S, Cingolani G (2009) Structural plasticity of the phage P22 tail needle gp26 probed with xenon gas. Protein Sci 18:537-548
153. Olson NH, Gingery M, Eiserling FA, Baker TS (2001) The structure of isometric capsids of bacteriophage T4. Virology 279:385-391 (Pubitemid 34161102)
154. Palva ET, Mäkelä PH (1980) Lipopolysaccharide heterogeneity in Salmonella typhimurium analyzed by sodium dodecyl sulfate polyacrylamide gel electrophoresis. Eur J Biochem 107:137-143
155. Panja D, Molineux IJ (2010) Dynamics of bacteriophage genome ejection in vitro and in vivo. Phys Biol 7:045006
156. Perez GL, Huynh B, Slater M, Maloy S (2009) Transport of phage P22 DNA across the cytoplasmic membrane. J Bacteriol 191:135-140
157. Petrov AS, Locker CR, Harvey SC (2009) Characterization of DNA conformation inside bacterial viruses. Phys Rev E Stat Nonlin Soft Matter Phys 80:021914
158. Petter JG, Vimr ER (1993) Complete nucleotide sequence of the bacteriophage K1F tail gene encoding endo-Nacylneuraminidase (endo-N) and comparison to an endo-N homolog in bacteriophage PK1E. J Bacteriol 175:4354-4363 (Pubitemid 23206936)
159. Pope WH, Weigele PR, Chang J, Pedulla ML, Ford ME, Houtz JM, Jiang W, Chiu W, Hatfull GF, Hendrix RW, King J (2007) Genome sequence, structural proteins, and capsid organization of the cyanophage Syn5: a "horned" bacteriophage of marine synechococcus . J Mol Biol 368:966-981 (Pubitemid 46574656)
160. Prehm P, Jann B, Jann K, Schmidt G, Stirm S (1976) On a bacteriophage T3 and T4 receptor region within the cell wall lipopolysaccharide of Escherichia coli B. J Mol Biol 101:277-281
161. Purohit PK, Inamdar MM, Grayson PD, Squires TM, Kondev J, Phillips R (2005) Forces during bacteriophage DNA packaging and ejection. Biophys J 88:851-866 (Pubitemid 40975923)
162. Rao GR, Chakravorty-Burma M, Burma DP (1972) Transient depression in the active transport across the membrane of Salmonella typhimurium, after infection with bacteriophage P22. Virology 49:811-814
163. Rao RN (1968) Bacteriophage P22 controlled exclusion in Salmonella typhimurium . J Mol Biol 35:607-622
164. Raspaud E, Forth T, Sao-Jose C, Tavares P, de Frutos M (2007) A kinetic analysis of DNA ejection from tailed phages revealing the prerequisite activation energy. Biophys J 93:3999-4005 (Pubitemid 350223815)
165. Rhoades M, Thomas CA Jr (1968) The P22 bacteriophage DNA molecule. II. Circular intracellular forms. J Mol Biol 37:41-61
166. Rickgauer JP, Fuller DN, Grimes S, Jardine PJ, Anderson DL, Smith DE (2008) Portal motor velocity and internal force resisting viral DNA packaging in bacteriophage f 29. Biophys J 94:159-167
167. Rohr TE, Troy FA (1980) Structure and biosynthesis of surface polymers containing polysialic acid in Escherichia coli . J Biol Chem 255:2332-2342 (Pubitemid 10036036)
168. Saigo K (1975) Polar DNA ejection in bacteriophage T7. Virology 65:120-127
169. Saigo K (1978) Isolation of high-density mutants and identification of nonessential structural proteins in bacteriophage T5; dispensability of L-shaped tail fibers and a secondary major head protein. Virology 85:422-433 (Pubitemid 8325438)
170. Sandmeier H, Iida S, Arber W (1992) DNA inversion regions Min of plasmid p15B and Cin of bacteriophage P1: evolution of bacteriophage tail fiber genes. J Bacteriol 174:3936-3944
171. Sao-Jose C, de Frutos M, Raspaud E, Santos MA, Tavares P (2007) Pressure built by DNA packing inside virions: enough to drive DNA ejection in vitro, largely insufficient for delivery into the bacterial cytoplasm. J Mol Biol 374:346-355 (Pubitemid 350007657)
172. Savalia D, Westblade LF, Goel M, Florens L, Kemp P, Akulenko N, Pavlova O, Padovan JC, Chait BT, Washburn MP, Ackermann HW, Mushegian A, Gabisonia T, Molineux I, Severinov K (2008) Genomic and proteomic analysis of f Eco32, a novel Escherichia coli bacteriophage. J Mol Biol 377:774-789
173. Scholl D, Rogers S, Adhya S, Merril CR (2001) Bacteriophage K1-5 encodes two different tail fiber proteins, allowing it to infect and replicate on both K1 and K5 strains of Escherichia coli . J Virol 75:2509-2515 (Pubitemid 32185014)
174. Scholl D, Kieleczawa J, Kemp P, Rush J, Richardson CC, Merril C, Adhya S, Molineux IJ (2004) Genomic analysis of bacteriophages SP6 and K1-5, an estranged subgroup of the T7 supergroup. J Mol Biol 335:1151-1171 (Pubitemid 38077238)
175. Scholl D, Adhya S, Merril C (2005) Escherichia coli K1's capsule is a barrier to bacteriophage T7. Appl Environ Microbiol 71:4872-4874 (Pubitemid 41129547)
176. Schulz EC, Schwarzer D, Frank M, Stummeyer K, Muhlenhoff M, Dickmanns A, Gerardy-Schahn R, Ficner R (2010) Structural basis for the recognition and cleavage of polysialic acid by the bacteriophage K1F tailspike protein EndoNF. J Mol Biol 397:341-351
177. Schwarzer D, Stummeyer K, Gerardy-Schahn R, Muhlenhoff M (2007) Characterization of a novel intramolecular chaperone domain conserved in endosialidases and other bacteriophage tail spike and fiber proteins. J Biol Chem 282:2821-2831 (Pubitemid 47084314)
178. Schwarzer D, Stummeyer K, Haselhorst T, Freiberger F, Rode B, Grove M, Scheper T, von Itzstein M, Muhlenhoff M, Gerardy-Schahn R (2009) Proteolytic release of the intramolecular chaperone domain confers processivity to endosialidase F. J Biol Chem 284:9465-9474
179. Serna-Rico A, Salas M, Meijer WJ (2002) The Bacillus subtilis phage f 29 protein p16.7, involved in f 29 DNA replication, is a membrane-localized single-stranded DNA-binding protein. J Biol Chem 277:6733-6742 (Pubitemid 34968477)
180. Serwer P, Wright ET, Hakala KW, Weintraub ST (2008) Evidence for bacteriophage T7 tail extension during DNA injection. BMC Res Notes 1:36
181. Simon LD, Anderson TF (1967) The infection of Escherichia coli by T2 and T4 bacteriophages as seen in the electron microscope. I. Attachment and penetration. Virology 32:279-297
182. Simpson AA, Tao Y, Leiman PG, Badasso MO, He Y, Jardine PJ, Olson NH, Morais MC, Grimes S, Anderson DL, Baker TS, Rossmann MG (2000) Structure of the bacteriophage f 29 DNA packaging motor. Nature 408:745-750 (Pubitemid 32015993)
183. Smith D, Tans J, Smith S, Grimes S, Anderson D, Bustamante C (2001) The bacteriophage f 29 portal motor can package DNA against a large internal force. Nature 413:748-752 (Pubitemid 33009954)
184. Smith NL, Taylor EJ, Lindsay AM, Charnock SJ, Turkenburg JP, Dodson EJ, Davies GJ, Black GW (2005) Structure of a group A streptococcal phage-encoded virulence factor reveals a catalytically active triple-stranded beta-helix. Proc Natl Acad Sci USA 102:17652-17657 (Pubitemid 41803552)
185. Steinbacher S, Seckler R, Miller S, Steipe B, Huber R, Reinemer P (1994) Crystal structure of P22 tailspike protein: interdigitated subunits in a thermostable trimer. Science 265:383-386 (Pubitemid 24259969)
186. Steinbacher S, Baxa U, Miller S, Weintraub A, Seckler R, Huber R (1996) Crystal structure of phage P22 tailspike protein complexed with Salmonella sp. O-antigen receptors. Proc Natl Acad Sci USA 93:10584-10588 (Pubitemid 26333030)
187. Steinbacher S, Miller S, Baxa U, Budisa N, Weintraub A, Seckler R, Huber R (1997) Phage P22 tailspike protein: crystal structure of the head-binding domain at 2.3 A, fully refined structure of the endorhamnosidase at 1.56. A resolution, and the molecular basis of O-antigen recognition and cleavage. J Mol Biol 267:865-880 (Pubitemid 27192660)
188. Steven AC, Trus BL, Maizel JV, Unser M, Parry DA, Wall JS, Hainfeld JF, Studier FW (1988) Molecular substructure of a viral receptor-recognition protein. The gp17 tail-fiber of bacteriophage T7. J Mol Biol 200:351-365
189. Stojkovic E, Rothman-Denes L (2007) Coliphage N4 N-acetylmuramidase defines a new family of murien hydrolases. J Mol Biol 366:406-419 (Pubitemid 46138104)
190. Strauss H, King J (1984) Steps in the stabilization of newly packaged DNA during phage P22 morphogenesis. J Mol Biol 172:523-543 (Pubitemid 14153843)
191. Struthers-Schlinke JS, Robins WP, Kemp P, Molineux IJ (2000) The internal head protein Gp16 controls DNA ejection from the bacteriophage T7 virion. J Mol Biol 301:35-45
192. Studier FW (1972) Bacteriophage T7. Science 176:367-376
193. Studier FW, Bandyopadhyay PK (1988) Model for how type I restriction enzymes select cleavage sites in DNA. Proc Natl Acad Sci USA 85:4677-4681
194. Stummeyer K, Dickmanns A, Muhlenhoff M, Gerardy-Schahn R, Ficner R (2005) Crystal structure of the polysialic acid-degrading endosialidase of bacteriophage K1F. Nat Struct Mol Biol 12:90-96 (Pubitemid 40082922)
195. Stummeyer K, Schwarzer D, Claus H, Vogel U, Gerardy-Schahn R, Muhlenhoff M (2006) Evolution of bacteriophages infecting encapsulated bacteria: lessons from Escherichia coli K1-specific phages. Mol Microbiol 60:1123-1135
196. Susskind MM, Wright A, Botstein D (1971) Superinfection exclusion by P22 prophage in lysogens of Salmonella typhimurium. II. Genetic evidence for two exclusion systems. Virology 45:638-652
197. Susskind MM, Botstein D (1978) Molecular genetics of bacteriophage P22. Microbiol Rev 42:385-413 (Pubitemid 8378880)
198. Takeda K, Uetake H (1973) In vitro interaction between phage and receptor lipopolysaccharide: a novel glycosidase associated with Salmonella phage epsilon15. Virology 52:148-159
199. Tan Y, Zhang K, Rao X, Jin X, Huang J, Zhu J, Chen Z, Hu X, Shen X, Wang L, Hu F (2007) Whole genome sequencing of a novel temperate bacteriophage of P. aeruginosa : evidence of tRNA gene mediating integration of the phage genome into the host bacterial chromosome. Cell Microbiol 9:479-491 (Pubitemid 46092173)
200. Tang J, Olson N, Jardine PJ, Grimes S, Anderson DL, Baker TS (2008) DNA poised for release in bacteriophage f 29. Structure 16:935-943
201. Tang L, Marion WR, Cingolani G, Prevelige PE, Johnson JE (2005) Three-dimensional structure of the bacteriophage P22 tail machine. EMBO J 24:2087-2095 (Pubitemid 40961793)
202. Tang L, Gilcrease EB, Casjens SR, Johnson JE (2006) Highly discriminatory binding of capsid-cementing proteins in bacteriophage L. Structure 14:837-845 (Pubitemid 43674099)
203. Ter-Nikogosian VA, Vartanian MK, Trchunian AA (1991) Changes in membrane potential and transport of ions through the S. typhimurium LT2 membrane induced by bacteriophages. Biofizika 36:281-285
204. Tye BK, Huberman JA, Botstein D (1974) Non-random circular permutation of phage P22 DNA. J Mol Biol 85:501-528
205. Tzlil S, Kindt JT, Gelbart WM, Ben-Shaul A (2003) Forces and pressures in DNA packaging and release from viral capsids. Biophys J 84:1616-1627 (Pubitemid 36322926)
206. Uetake H, Nakagawa T, Akiba T (1955) The relationship of bacteriophage to antigenic changes in Group E salmonellas. J Bacteriol 69:571-579
207. Uetake H, Hagiwara S (1969) Transfer of conversion gene(s) between different Salmonella phages g341 and epsilon-15. Virology 37:8-14
208. Umlauf B, Dreiseikelmann B (1992) Cloning, sequencing, and overexpression of gene 16 of Salmonella bacteriophage P22. Virology 188:495-501
209. Villafane R, Zayaz M, Gilcrease E, Kropinski A, Casjens S (2008) Genomic analysis of bacteriophage epsilon34
210. Vinga I, Sao-Jose C, Traveres P, Santos M (2006) Bacteriophage entry into the host cell. In: Wegrzyn G (ed) Modern bacteriophage biology and biotechnology. Research Signpost, Kerala, India, pp 165-205
211. Walkinshaw MD, Taylor P, Sturrock SS, Atanasiu C, Berge T, Henderson RM, Edwardson JM, Dryden DT (2002) Structure of Ocr from bacteriophage T7, a protein that mimics B-form DNA. Mol Cell 9:187-194 (Pubitemid 34127782)
212. Walter M, Fiedler C, Grassl R, Biebl M, Rachel R, Hermo-Parrado XL, Llamas-Saiz AL, Seckler R, Miller S, van Raaij MJ (2008) Structure of the receptor-binding protein of bacteriophage Det7: a podoviral tail spike in a myovirus. J Virol 82:2265-2273 (Pubitemid 351293526)
213. Wang HY, Elston T, Mogilner A, Oster G (1998a) Force generation in RNA polymerase. Biophys J 74:1186-1202 (Pubitemid 28108530)
214. Wang MD, Schnitzer MJ, Yin H, Landick R, Gelles J, Block SM (1998b) Force and velocity measured for single molecules of RNA polymerase. Science 282:902-907 (Pubitemid 28507515)
215. Willis SH, Kazmierczak KM, Carter RH, Rothman-Denes LB (2002) N4 RNA polymerase II, a heterodimeric RNA polymerase with homology to the single-subunit family of RNA polymerases. J Bacteriol 184:4952-4961 (Pubitemid 34971019)
216. Wright A (1971) Mechanism of conversion of Salmonella O-antigen by bacteriophage epsilon 34. J Bacteriol 105:927-936
217. Xiang Y, Morais MC, Battisti AJ, Grimes S, Jardine PJ, Anderson DL, Rossmann MG (2006) Structural changes of bacteriophage f 29 upon DNA packaging and release. EMBO J 25:5229-5239 (Pubitemid 44658539)
218. Xiang Y, Morais MC, Cohen DN, Bowman VD, Anderson DL, Rossmann MG (2008) Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage f 29 tail. Proc Natl Acad Sci USA 105:9552-9557 (Pubitemid 352031339)
219. Xiang Y, Leiman PG, Li L, Grimes S, Anderson DL, Rossmann MG (2009) Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike. Mol Cell 34:375-386
220. Yin H, Wang MD, Svoboda K, Landick R, Block SM, Gelles J (1995) Transcription against an applied force. Science 270:1653-1657 (Pubitemid 26002439)
221. Zarybnicky V (1969) Mechanism of T-even DNA ejection. J Theor Biol 22:33-42
222. Zavriev SK, Shemyakin MF (1982) RNA polymerase-dependent mechanism for the stepwise T7 phage DNA transport from the virion into E. coli . Nucleic Acids Res 10:1635-1652