Luria-Delbrück estimation of turnip mosaic virus mutation rate in vivo

Journal of Virology

Volumn 86, Issue 6, 2012, Pages 3386-3388

  de la Iglesia, Francisca ^a   Martínez, Fernando ^a   Hillung, Julia ^a   Cuevas, José M ^a   Gerrish, Philip J ^b   Daròs, José Antonio ^a   Elena, Santiago F ^a,c  

^a Ciudad Politécnica de la Innovación   (Spain)

^b UNIVERSITY OF NEW MEXICO   (United States)

^c SANTA FE INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA;

ARTICLE; GENE EXPRESSION; GENETIC VARIABILITY; MATHEMATICAL ANALYSIS; MOSAIC VIRUS; MUTATION RATE; NONHUMAN; PLANT VIRUS; PRIORITY JOURNAL; TRANSGENIC PLANT; TURNIP MOSAIC VIRUS; VIRUS GENOME; VIRUS INFECTIVITY; VIRUS MUTATION; VIRUS REPLICATION; BIOLOGICAL MODEL; GENETICS; MUTATION; PLANT DISEASE; VIROLOGY;

LURIA; TURNIP MOSAIC VIRUS;

MODELS, GENETIC; MOSAIC VIRUSES; MUTATION; MUTATION RATE; PLANT DISEASES;

EID: 84857934175     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.06909-11     Document Type: Article

References (26)

1. Anderson JP, Daifuku R, Loeb LA. 2004. Viral error catastrophe by mutagenic nucleosides. Annu. Rev. Microbiol. 58:183-205.
2. Arribas M, Cabanilles L, Lázaro E. 2011. Identification of mutations conferring 5-azacytidine resistance in bacteriophage Q.. Virology 417: 343-352.
3. Boden D, Pusch O, Lee F, Tucker L, Ramratnam B. 2003. Human immunodeficiency virus type 1 escape from RNA interference. J. Virol. 77:11531-11535.
4. Chen CC, et al. 2003. Identification of Turnip mosaic virus isolates causing yellow stripe and spot on calla lily. Plant Dis. 87:901-905.
5. Coburn GA, Cullen BR. 2002. Potent and specific inhibition of Human immunodeficiency virus type 1 replication by RNA interference. J. Virol. 76:9225-9231.
6. Davenport MP, Loh L, Petravic J, Kent SJ. 2008. Rates of HIV immune escape and reversion: implications for vaccination. Trends Microbiol. 16: 561-566.
7. Drake JW, Holland JJ. 1999. Mutation rates among RNA viruses. Proc. Natl. Acad. Sci. U. S. A. 96:13910 -13913.
8. Elena SF, Moya A. 1999. Rate of deleterious mutation and the distribution of its effects on fitness in vesicular stomatitis virus. J. Evol. Biol. 12:1078 -1088.
9. Foster PL. 2006. Methods for determining spontaneous mutation rates. Methods Enzymol. 409:195-213.
10. Gago S, Elena SF, Flores R, Sanjuán R. 2009. Extremely high mutation rate of a hammerhead viroid. Science 323:1308.
11. Ge Q, MT, et al. 2003. RNA interference of Influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription. Proc. Natl. Acad. Sci. U. S. A. 100:2718 -2723.
12. Gerrish PJ. 2008. A simple formula for obtaining markedly improved mutation rate estimates. Genetics 180:1773-1778.
13. Gitlin L, Andino R. 2005. Poliovirus escape from RNA interference: short interfering RNA-target recognition and implications for therapeutic approaches. J. Virol. 79:1027-1035.
14. Holmes EC. 2009. The evolutionary genetics of emerging viruses. Annu. Rev. Ecol. Evol. Syst. 40:353-372.
15. Kondrashov FA, Kondrashov AS. 2010. Measurements of spontaneous rates of mutation in recent past and the near future. Philos. Trans. R. Soc. Lond. B 365:1169 -1176.
16. Krönke J, et al. 2004. Alternative approaches for efficient inhibition of Hepatitis C virus RNA replication by small interfering RNAs. J. Virol. 78:3436 -3446.
17. Lafforgue G, et al. 2011. Tempo and mode of plant RNA virus escape from RNA interference-mediated resistance. J. Virol. 85:9686 -9695.
18. Lea DE, Coulson CA. 1949. The distribution of the numbers of mutants in bacterial populations. J. Genet. 49:264 -285.
19. Luria SE, Delbrück M. 1943. Mutations of bacteria from virus sensitivity to virus resistance. Genetics 28:491-511.
20. Malpica JM, et al. 2002. The rate and character of spontaneous mutation in an RNA virus. Genetics 162:1505-1511.
21. Martínez F, Sardanyés J, Elena SF, Daròs JA. 2011. Dynamics of a plant RNA virus intracellular accumulation: stamping machine vs. geometric replication. Genetics 188:637- 646.
22. Niu Q, et al. 2006. Expression of artificial microRNAs in transgenic Arabidopsis thaliana confers virus resistance. Nat. Biotechnol. 24:1420- 1428.
23. Sanjuán R, Agudelo-Romero P, Elena SF. 2009. Upper limit mutation rate estimation for a plant RNA virus. Biol. Lett. 5:394 -396.
24. Sanjuán R, Nebot MR, Chirico N, Mansky LM, Belshaw R. 2010. Viral mutation rates. J. Virol. 84:9733-9748.
25. Tromas N, Elena SF. 2010. The rate and spectrum of spontaneous mutations in a plant RNA virus. Genetics 185:983-989.
26. Vignuzzi M, Wendt E, Andino R. 2008. Engineering attenuated virus vaccines by controlling replication fidelity. Nat. Med. 14:154 -161.