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Volumn 28, Issue 5, 2012, Pages 709-714

Mining and evaluation of molecular relationships in literature

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 84857809422     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts026     Document Type: Article
Times cited : (8)

References (26)
  • 1
    • 40549106856 scopus 로고    scopus 로고
    • Assisted curation: does text mining really help?
    • Alex,B. et al. (2008) Assisted curation: does text mining really help? Pac. Symp. Biocomput., 556-567.
    • (2008) Pac. Symp. Biocomput. , pp. 556-567
    • Alex, B.1
  • 2
    • 79960766975 scopus 로고    scopus 로고
    • Literature mining, ontologies and information visualization for drug repurposing
    • Andronis,C. et al. (2011) Literature mining, ontologies and information visualization for drug repurposing. Brief. Bioinform., 12, 357-368.
    • (2011) Brief. Bioinform. , vol.12 , pp. 357-368
    • Andronis, C.1
  • 3
    • 75549087047 scopus 로고    scopus 로고
    • The IntAct molecular interaction database in 2010
    • Aranda,B. et al. (2010) The IntAct molecular interaction database in 2010. Nucleic Acids Res., 38 (Database issue), D525-D531.
    • (2010) Nucleic Acids Res , vol.38 , Issue.DATABASE ISS
    • Aranda, B.1
  • 4
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner,M. et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 5
    • 58149187893 scopus 로고    scopus 로고
    • The GOA database in 2009-an integrated Gene Ontology Annotation resource
    • Barrell,D. (2009) The GOA database in 2009-an integrated Gene Ontology Annotation resource. Nucleic Acids Res., 37 (Database issue), D396-D403.
    • (2009) Nucleic Acids Res , vol.37 , Issue.DATABASE ISS
    • Barrell, D.1
  • 6
    • 84857868928 scopus 로고    scopus 로고
    • Biomedical literature mining for biological databases annotation
    • Giannopoulou,E.G. (ed), InTech - Open Access Publisher, University Campus STeP Ri, Slavka Krautzeka 83/A, 51000 Rijeka, Croatia
    • Berardi,M. et al. (2008) Biomedical literature mining for biological databases annotation. In Giannopoulou,E.G. (ed), Data Mining in Medical and Biological Research, InTech - Open Access Publisher, University Campus STeP Ri, Slavka Krautzeka 83/A, 51000 Rijeka, Croatia, pp. 267-290.
    • (2008) Data Mining in Medical and Biological Research , pp. 267-290
    • Berardi, M.1
  • 7
    • 80052595172 scopus 로고    scopus 로고
    • Short hairpin RNA screen reveals bromodomain proteins as novel targets in acute myeloid leukemia
    • Blobel,G.A. et al. (2011) Short hairpin RNA screen reveals bromodomain proteins as novel targets in acute myeloid leukemia. Cancer Cell, 20, 287-288.
    • (2011) Cancer Cell , vol.20 , pp. 287-288
    • Blobel, G.A.1
  • 8
    • 54949108677 scopus 로고    scopus 로고
    • Chapter 12 - PubChem: Integrated platform of small molecules and biological activities
    • Bolton,E.E. et al. (2008) Chapter 12 - PubChem: Integrated platform of small molecules and biological activities. Ann. Rep. Comput. Chem., 4, 217-241.
    • (2008) Ann. Rep. Comput. Chem. , vol.4 , pp. 217-241
    • Bolton, E.E.1
  • 9
    • 74049108922 scopus 로고    scopus 로고
    • BLAST+: architecture and applications
    • Camacho,C. et al. (2009) BLAST+: architecture and applications. BMC Bioinformatics, 10, 421.
    • (2009) BMC Bioinformatics , vol.10 , pp. 421
    • Camacho, C.1
  • 10
    • 79959952662 scopus 로고    scopus 로고
    • CoPub update: CoPub 5.0 a text mining system to answer biological questions
    • Web Server Issue
    • Fleuren,W.W.M. et al. (2011) CoPub update: CoPub 5.0 a text mining system to answer biological questions. Nucleic Acids Res., 39 (Web Server issue), W450-W454.
    • (2011) Nucleic Acids Res , vol.39
    • Fleuren, W.W.M.1
  • 11
    • 79954559120 scopus 로고    scopus 로고
    • Compounds in literature (CIL): screening for compounds and relatives in PubMed
    • Grüning,B.A. et al. (2011) Compounds in literature (CIL): screening for compounds and relatives in PubMed. Bioinformatics, 27, 1341-1342.
    • (2011) Bioinformatics , vol.27 , pp. 1341-1342
    • Grüning, B.A.1
  • 12
    • 38549182474 scopus 로고    scopus 로고
    • SuperTarget and Matador: resources for exploring drug-target relationships
    • Günther,S. et al. (2008) SuperTarget and Matador: resources for exploring drug-target relationships. Nucleic Acids Res., 36 (Database issue), D919-D922.
    • (2008) Nucleic Acids Res , vol.36 , Issue.DATABASE ISS
    • Günther, S.1
  • 13
    • 84857840354 scopus 로고    scopus 로고
    • SuperTarget goes quantitative: update on drug-target interactions
    • Hecker,N. et al. (2012) SuperTarget goes quantitative: update on drug-target interactions. Nucleic Acids Res., 40, D1113-D1117.
    • (2012) Nucleic Acids Res , vol.40
    • Hecker, N.1
  • 14
    • 70449387056 scopus 로고    scopus 로고
    • A dictionary to identify small molecules and drugs in free text
    • Hettne,K.M. et al. (2009) A dictionary to identify small molecules and drugs in free text. Bioinformatics, 25, 2983-2991.
    • (2009) Bioinformatics , vol.25 , pp. 2983-2991
    • Hettne, K.M.1
  • 15
    • 58149203231 scopus 로고    scopus 로고
    • InterPro: the integrative protein signature database
    • Hunter,S. et al. (2009) InterPro: the integrative protein signature database. Nucleic Acids Res, 37 (Database issue), D211-D215.
    • (2009) Nucleic Acids Res , vol.37 , Issue.DATABASE ISS
    • Hunter, S.1
  • 16
    • 62549104880 scopus 로고    scopus 로고
    • SciMiner: web-based literature mining tool for target identification and functional enrichment analysis
    • Hur,J. et al. (2009) SciMiner: web-based literature mining tool for target identification and functional enrichment analysis. Bioinformatics, 25, 838-840.
    • (2009) Bioinformatics , vol.25 , pp. 838-840
    • Hur, J.1
  • 17
    • 78651287426 scopus 로고    scopus 로고
    • DrugBank 3.0: a comprehensive resource for 'omics' research on drugs
    • Knox,C. et al. (2011) DrugBank 3.0: a comprehensive resource for 'omics' research on drugs. Nucleic Acids Res., 39 (Database issue), D1035-D1041.
    • (2011) Nucleic Acids Res , vol.39 , Issue.DATABASE ISS
    • Knox, C.1
  • 18
    • 51049084462 scopus 로고    scopus 로고
    • Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge
    • Krallinger,M. et al. (2008) Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge. Genome Biol., 9 (Suppl. 2) S1.
    • (2008) Genome Biol , vol.9 , Issue.SUPPL. 2
    • Krallinger, M.1
  • 19
    • 75549087827 scopus 로고    scopus 로고
    • STITCH 2: an interaction network database for small molecules and proteins
    • Kuhn,M. et al. (2010) STITCH 2: an interaction network database for small molecules and proteins. Nucleic Acids Res., 38 (Database issue), D552-D556.
    • (2010) Nucleic Acids Res , vol.38 , Issue.DATABASE ISS
    • Kuhn, M.1
  • 20
    • 79960976768 scopus 로고    scopus 로고
    • UniProt Knowledgebase: a hub of integrated protein data
    • bar009; doi:10.1093/database/bar009
    • Magrane,M. and Consortium,U. (2011) UniProt Knowledgebase: a hub of integrated protein data. Database, 2011, bar009; doi:10.1093/database/bar009.
    • (2011) Database , pp. 2011
    • Magrane, M.1    Consortium, U.2
  • 21
    • 78651331299 scopus 로고    scopus 로고
    • MIPS: curated databases and comprehensive secondary data resources in 2010
    • Mewes,H.W. et al. (2011) MIPS: curated databases and comprehensive secondary data resources in 2010. Nucleic Acids Res, 39 (Database issue), D220-D224.
    • (2011) Nucleic Acids Res , vol.39 , Issue.DATABASE ISS
    • Mewes, H.W.1
  • 22
    • 38349118307 scopus 로고    scopus 로고
    • Text processing through web services: calling Whatizit
    • Rebholz-Schuhmann,D. et al. (2008) Text processing through web services: calling Whatizit. Bioinformatics, 24, 296-298.
    • (2008) Bioinformatics , vol.24 , pp. 296-298
    • Rebholz-Schuhmann, D.1
  • 23
    • 33846664313 scopus 로고    scopus 로고
    • EBIMed-text crunching to gather facts for proteins from Medline
    • Rebholz-Schuhmann,D. et al. (2007) EBIMed-text crunching to gather facts for proteins from Medline. Bioinformatics, 23, e237-e244.
    • (2007) Bioinformatics , vol.23
    • Rebholz-Schuhmann, D.1
  • 24
    • 78651303897 scopus 로고    scopus 로고
    • IUPHAR-DB: new receptors and tools for easy searching and visualization of pharmacological data
    • Sharman,J.L. et al. (2011) IUPHAR-DB: new receptors and tools for easy searching and visualization of pharmacological data. Nucleic Acids Res., 39 (Database issue), D534-D538.
    • (2011) Nucleic Acids Res , vol.39 , Issue.DATABASE ISS
    • Sharman, J.L.1
  • 25
    • 75549090848 scopus 로고    scopus 로고
    • Update of TTD: Therapeutic Target Database
    • Zhu,F. et al. (2010a) Update of TTD: Therapeutic Target Database. Nucleic Acids Res., 38 (Database issue), D787-D791.
    • (2010) Nucleic Acids Res , vol.38 , Issue.DATABASE ISS
    • Zhu, F.1
  • 26
    • 77956766989 scopus 로고    scopus 로고
    • WENDI: A tool for finding non-obvious relationships between compounds and biological properties, genes, diseases and scholarly publications
    • Zhu,Q. et al. (2010b) WENDI: A tool for finding non-obvious relationships between compounds and biological properties, genes, diseases and scholarly publications. J. Cheminform., 2, 6.
    • (2010) J. Cheminform. , vol.2 , pp. 6
    • Zhu, Q.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.