-
1
-
-
40549106856
-
Assisted curation: does text mining really help?
-
Alex,B. et al. (2008) Assisted curation: does text mining really help? Pac. Symp. Biocomput., 556-567.
-
(2008)
Pac. Symp. Biocomput.
, pp. 556-567
-
-
Alex, B.1
-
2
-
-
79960766975
-
Literature mining, ontologies and information visualization for drug repurposing
-
Andronis,C. et al. (2011) Literature mining, ontologies and information visualization for drug repurposing. Brief. Bioinform., 12, 357-368.
-
(2011)
Brief. Bioinform.
, vol.12
, pp. 357-368
-
-
Andronis, C.1
-
3
-
-
75549087047
-
The IntAct molecular interaction database in 2010
-
Aranda,B. et al. (2010) The IntAct molecular interaction database in 2010. Nucleic Acids Res., 38 (Database issue), D525-D531.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.DATABASE ISS
-
-
Aranda, B.1
-
4
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner,M. et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
5
-
-
58149187893
-
The GOA database in 2009-an integrated Gene Ontology Annotation resource
-
Barrell,D. (2009) The GOA database in 2009-an integrated Gene Ontology Annotation resource. Nucleic Acids Res., 37 (Database issue), D396-D403.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.DATABASE ISS
-
-
Barrell, D.1
-
6
-
-
84857868928
-
Biomedical literature mining for biological databases annotation
-
Giannopoulou,E.G. (ed), InTech - Open Access Publisher, University Campus STeP Ri, Slavka Krautzeka 83/A, 51000 Rijeka, Croatia
-
Berardi,M. et al. (2008) Biomedical literature mining for biological databases annotation. In Giannopoulou,E.G. (ed), Data Mining in Medical and Biological Research, InTech - Open Access Publisher, University Campus STeP Ri, Slavka Krautzeka 83/A, 51000 Rijeka, Croatia, pp. 267-290.
-
(2008)
Data Mining in Medical and Biological Research
, pp. 267-290
-
-
Berardi, M.1
-
7
-
-
80052595172
-
Short hairpin RNA screen reveals bromodomain proteins as novel targets in acute myeloid leukemia
-
Blobel,G.A. et al. (2011) Short hairpin RNA screen reveals bromodomain proteins as novel targets in acute myeloid leukemia. Cancer Cell, 20, 287-288.
-
(2011)
Cancer Cell
, vol.20
, pp. 287-288
-
-
Blobel, G.A.1
-
8
-
-
54949108677
-
Chapter 12 - PubChem: Integrated platform of small molecules and biological activities
-
Bolton,E.E. et al. (2008) Chapter 12 - PubChem: Integrated platform of small molecules and biological activities. Ann. Rep. Comput. Chem., 4, 217-241.
-
(2008)
Ann. Rep. Comput. Chem.
, vol.4
, pp. 217-241
-
-
Bolton, E.E.1
-
9
-
-
74049108922
-
BLAST+: architecture and applications
-
Camacho,C. et al. (2009) BLAST+: architecture and applications. BMC Bioinformatics, 10, 421.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
-
10
-
-
79959952662
-
CoPub update: CoPub 5.0 a text mining system to answer biological questions
-
Web Server Issue
-
Fleuren,W.W.M. et al. (2011) CoPub update: CoPub 5.0 a text mining system to answer biological questions. Nucleic Acids Res., 39 (Web Server issue), W450-W454.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Fleuren, W.W.M.1
-
11
-
-
79954559120
-
Compounds in literature (CIL): screening for compounds and relatives in PubMed
-
Grüning,B.A. et al. (2011) Compounds in literature (CIL): screening for compounds and relatives in PubMed. Bioinformatics, 27, 1341-1342.
-
(2011)
Bioinformatics
, vol.27
, pp. 1341-1342
-
-
Grüning, B.A.1
-
12
-
-
38549182474
-
SuperTarget and Matador: resources for exploring drug-target relationships
-
Günther,S. et al. (2008) SuperTarget and Matador: resources for exploring drug-target relationships. Nucleic Acids Res., 36 (Database issue), D919-D922.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.DATABASE ISS
-
-
Günther, S.1
-
13
-
-
84857840354
-
SuperTarget goes quantitative: update on drug-target interactions
-
Hecker,N. et al. (2012) SuperTarget goes quantitative: update on drug-target interactions. Nucleic Acids Res., 40, D1113-D1117.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Hecker, N.1
-
14
-
-
70449387056
-
A dictionary to identify small molecules and drugs in free text
-
Hettne,K.M. et al. (2009) A dictionary to identify small molecules and drugs in free text. Bioinformatics, 25, 2983-2991.
-
(2009)
Bioinformatics
, vol.25
, pp. 2983-2991
-
-
Hettne, K.M.1
-
15
-
-
58149203231
-
InterPro: the integrative protein signature database
-
Hunter,S. et al. (2009) InterPro: the integrative protein signature database. Nucleic Acids Res, 37 (Database issue), D211-D215.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.DATABASE ISS
-
-
Hunter, S.1
-
16
-
-
62549104880
-
SciMiner: web-based literature mining tool for target identification and functional enrichment analysis
-
Hur,J. et al. (2009) SciMiner: web-based literature mining tool for target identification and functional enrichment analysis. Bioinformatics, 25, 838-840.
-
(2009)
Bioinformatics
, vol.25
, pp. 838-840
-
-
Hur, J.1
-
17
-
-
78651287426
-
DrugBank 3.0: a comprehensive resource for 'omics' research on drugs
-
Knox,C. et al. (2011) DrugBank 3.0: a comprehensive resource for 'omics' research on drugs. Nucleic Acids Res., 39 (Database issue), D1035-D1041.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.DATABASE ISS
-
-
Knox, C.1
-
18
-
-
51049084462
-
Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge
-
Krallinger,M. et al. (2008) Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge. Genome Biol., 9 (Suppl. 2) S1.
-
(2008)
Genome Biol
, vol.9
, Issue.SUPPL. 2
-
-
Krallinger, M.1
-
19
-
-
75549087827
-
STITCH 2: an interaction network database for small molecules and proteins
-
Kuhn,M. et al. (2010) STITCH 2: an interaction network database for small molecules and proteins. Nucleic Acids Res., 38 (Database issue), D552-D556.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.DATABASE ISS
-
-
Kuhn, M.1
-
20
-
-
79960976768
-
UniProt Knowledgebase: a hub of integrated protein data
-
bar009; doi:10.1093/database/bar009
-
Magrane,M. and Consortium,U. (2011) UniProt Knowledgebase: a hub of integrated protein data. Database, 2011, bar009; doi:10.1093/database/bar009.
-
(2011)
Database
, pp. 2011
-
-
Magrane, M.1
Consortium, U.2
-
21
-
-
78651331299
-
MIPS: curated databases and comprehensive secondary data resources in 2010
-
Mewes,H.W. et al. (2011) MIPS: curated databases and comprehensive secondary data resources in 2010. Nucleic Acids Res, 39 (Database issue), D220-D224.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.DATABASE ISS
-
-
Mewes, H.W.1
-
22
-
-
38349118307
-
Text processing through web services: calling Whatizit
-
Rebholz-Schuhmann,D. et al. (2008) Text processing through web services: calling Whatizit. Bioinformatics, 24, 296-298.
-
(2008)
Bioinformatics
, vol.24
, pp. 296-298
-
-
Rebholz-Schuhmann, D.1
-
23
-
-
33846664313
-
EBIMed-text crunching to gather facts for proteins from Medline
-
Rebholz-Schuhmann,D. et al. (2007) EBIMed-text crunching to gather facts for proteins from Medline. Bioinformatics, 23, e237-e244.
-
(2007)
Bioinformatics
, vol.23
-
-
Rebholz-Schuhmann, D.1
-
24
-
-
78651303897
-
IUPHAR-DB: new receptors and tools for easy searching and visualization of pharmacological data
-
Sharman,J.L. et al. (2011) IUPHAR-DB: new receptors and tools for easy searching and visualization of pharmacological data. Nucleic Acids Res., 39 (Database issue), D534-D538.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.DATABASE ISS
-
-
Sharman, J.L.1
-
25
-
-
75549090848
-
Update of TTD: Therapeutic Target Database
-
Zhu,F. et al. (2010a) Update of TTD: Therapeutic Target Database. Nucleic Acids Res., 38 (Database issue), D787-D791.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.DATABASE ISS
-
-
Zhu, F.1
-
26
-
-
77956766989
-
WENDI: A tool for finding non-obvious relationships between compounds and biological properties, genes, diseases and scholarly publications
-
Zhu,Q. et al. (2010b) WENDI: A tool for finding non-obvious relationships between compounds and biological properties, genes, diseases and scholarly publications. J. Cheminform., 2, 6.
-
(2010)
J. Cheminform.
, vol.2
, pp. 6
-
-
Zhu, Q.1
|