Analysis of genetic diversity in Monilinia fructicola from the Ebro Valley in Spain using ISSR and RAPD markers

European Journal of Plant Pathology

Volumn 132, Issue 4, 2012, Pages 511-524

  Villarino, M ^a   Larena, I ^a   Martinez, F ^a   Melgarejo, P ^a   de Cal, A ^a  

^a INIA   (Spain)

Author keywords

Asexual reproduction; Founder population; Genetic index; Genetic variation; Molecular markers; Quarantine pathogen

Indexed keywords

ASEXUAL REPRODUCTION; CLUSTER ANALYSIS; FOUNDER EFFECT; FUNGUS; GENE FLOW; GENETIC DRIFT; GENETIC MARKER; GENETIC VARIATION; INDEX METHOD; INVASIVE SPECIES; MOLECULAR ANALYSIS; PATHOGEN; PRINCIPAL COMPONENT ANALYSIS; QUARANTINE; RELATEDNESS; VARIANCE ANALYSIS;

CALIFORNIA; EBRO VALLEY; FRANCE; NEW ZEALAND; SPAIN; UNITED STATES; URUGUAY;

MONILINIA FRUCTICOLA;

EID: 84857794089     PISSN: 09291873     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10658-011-9895-y     Document Type: Article

References (47)

1. Agapow, P. M., & Burt, A. (2001). Indices of multilocus linkage disequilibrium. Molecular Ecology Notes, 1, 101-102.
2. Byrde, R. J., & Willetts, H. J. (1977). The brown rot fungi of fruit - Their biology and control. Oxford: Pergamon Press.
3. De Cal, A., & Melgarejo, P. (1999). Effects of long-wave UV light on Monilinia growth and identification of species. Plant Disease, 83, 62-65.
4. De Cal, A., Gell, I., Usall, J., Viñas, I., & Melgarejo, P. (2009). First report of brown rot caused by Monilinia fructicola in peach orchards in Ebro Valley, Spain. Plant Disease, 93, 763.
5. Duchoslavová, J., Sirucková, I., Zapletalová, E., Navratil, M., & Safarova, D. (2007). First report of brown rot caused by Monilinia fructicola on various stone and pome fruits in the Czech Republic. Plant Disease, 91, 907.
6. EPPO. (2006). Monilinia fructicola. Distribution maps of quarantine pest of Europe http://www. eppo. org/QUARANTINE/fungi/Monilinia_fructicola/MONIFC_map. htm.
7. EPPO. (2007). List of A2 pests regulated as quarantine pests in the EPPO region. OEPP/EPPO from http://www. eppo. org/QUARANTINE/listA2. htm.
8. Fan, J. Y., Guo, L.-Y., Xu, J. P., Luo, Y., & Michailides, T. J. (2010). Genetic diversity of populations of Monilinia fructicola (Fungi, Ascomycota, Helotiales) from China. The Journal of Eukaryotic Microbiology, 57, 206-212.
9. Free, S. J., Holtz, B. A., & Michailides, T. J. (1996). Mating behavior in field populations of Monilinia fructicola in California. Mycologia, 88, 208-211.
10. Fulton, C. E., van Leeuwen, G. C. M., & Brown, A. E. (1999). Genetic variation among and within Monilinia species causing brown rot of stone and pome fruits. European Journal of Plant Pathology, 105, 495-500.
11. Gagné, P., Yang, D. Q., Hamelin, R. C., & Bermier, L. (2001). Genetic variability of Canadian populations of the sapstain fungus Ophiosthoma piceae. Phytopathology, 91, 369-376.
12. Gell, I., Larena, I., & Melgarejo, P. (2007a). Genetic diversity in Monilinia laxa populations in peach orchards in Spain. Journal of Phytopathology, 155, 549-556.
13. Gell, I., Cubero, J., & Melgarejo, P. (2007b). Two different PCR approaches for universal diagnosis of brown rot and identification of Monilinia spp. in stone fruit trees. Journal Applied Microbiology, 103, 2629-2637.
14. Gell, I., De Cal, A., Torres, R., Usall, J., & Melgarejo, P. (2008). Relationship between the incidence of latent infections caused by Monilinia spp. and the incidence of brown rot of peach fruit: Factors affecting latent infection. European Journal of Plant Pathology, 121, 487-498.
15. Goodwin, S. B., Sielman, L. J., Matuszak, J. M., Bergeron, S. N., & Fry, W. E. (1992). Clonal diversity and genetic differentiation of Phytophthora infestans populations in northern and central Mexico. Phytopathology, 82, 955-961.
16. Goodwin, S. B., Saghai Maroof, M. A., Allard, R. W., & Webster, R. K. (1993). Isozyme variation within and among populations of Rhynchosporium secalis in Europe, Australia and the United States. Mycological Research, 97, 49-58.
17. Groppe, K., Sanders, I., Wiemken, A., & Boller, T. (1995). A microsatellite marker for studying the ecology and diversity of fungal endophytes (Epichlöe spp.) in grasses. Applied and Environmental Microbiology, 61, 3943-3949.
18. Grünwald, N. J., Goodwin, S. B., Milgroom, M. G., & Fry, W. E. (2003). Analysis of genotypic diversity data for populations of microorganisms. Phytopathology, 93, 738-746.
19. Hilber-Bodmer, M., Bünter, M., & Patocchi, A. (2010). First report of brown rot caused by Monilinia fructicola on apricot in a Swiss orchard. Plant Disease, 94, 643.
20. Holtz, B. A., Michailides, T. J., & Hong, C. X. (1998). Development of apothecia from stone fruit infected and stromatized by Monilinia fructicola in California. Plant Disease, 82, 1375-1380.
21. Jana, T., Sharma, T. R., & Singh, N. K. (2005). SSR-based detection of genetic variability in the charcoal root rot pathogen Macrophomina phaseolina. Mycological Research, 109, 81-86.
22. Lichou, J., Mandrin, J. F., Breniaux, D., Mercier, V., Giauque, P., Desbrus, D., et al. (2002). Une nouvelle moniliose. Phytoma, 547, 22-25.
23. Lim, S., Notley-McRobb, L., Lim, M., & Carter, D. A. (2004). A comparison of nature and abundance of microsatellite in 14 fungal genomes. Fungal Genetics and Biology, 41, 1025-1036.
24. Liu, Y.-C., Cortesi, P., Double, M. L., MacDonald, W. L., & Milgroom, M. G. (1996). Diversity and multilocus genetic structure in populations of Cryphonectria parasitica. Phytopathology, 86, 1344-1351.
25. Longato, S., & Bonfante, P. (1997). Molecular identification of mycorrhizal fungi by direct amplification of microsatellite regions. Mycological Research, 101, 425-432.
26. Ma, Z., & Michailides, T. J. (2005). Genetic structure of Botrytis cinerea populations from different host plants in California. Plant Disease, 89, 1083-1089.
27. Ma, Z., Yoshimura, M. A., & Michailides, T. J. (2003a). Identification and characterization of benzimidazole resistance in Monilinia fructicola from stone fruit orchards in California. Applied and Environmental Microbiology, 39, 7145-7152.
28. Ma, Z., Luo, Y., & Michailides, T. J. (2003b). Nested PCR assays for detection of Monilinia fructicola in stone fruit orchards and Botryosphaeria dothidea from pistachios in California. Journal of Phytopathology, 151, 312-322.
29. McDonald, B. (1997). The population genetics of fungi: Tools and techniques. Phytopathology, 87, 448-453.
30. Milgroom, M. G., Lipari, S. E., & Wang, K. (1992). Comparison of genetic diversity in the chestnut blight fungus, Cryphonectria (Endothia) parasitica, from China and the US. Mycological Research, 96, 1114-1120.
31. Moyano, C., Alfonso, C., Gallego, J., Raposo, R., & Melgarejo, P. (2003). Comparison of RAPD and AFLP markers analysis as a means to study the genetic structure of Botrytis cinerea populations. European Journal of Plant Pathology, 109, 515-522.
32. Munda, A., & Virscek Marn, M. (2010). First report of brown rot caused by Monilinia fructicola affecting peach orchards in Slovenia. Plant Disease, 94, 1166.
33. Nei, M. (1973). Analysis of genetic diversity in subdivided populations. Proceedings of the National Academy of Sciences of USA, 70, 3321-3323.
34. Nei, M. (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583-590.
35. Nei, M., Maruyama, T., & Chakraborty, R. (1975). The bottleneck effect and genetic variability in populations. Evolution, 29, 1-10.
36. Peakall, R., & Smouse, P. E. (2006). GENALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288-295.
37. Pellegrino, C., Gullino, M. L., Garibaldi, A., & Spadaro, D. (2009). First report of brown rot of stone fruit caused by Monilinia fructicola in Italy. Plant Disease, 93, 668.
38. Rohlf, F. J. (1993). Contributions to morphometrics: Relative warp analysis and an example of its application to mosquito wings. In Marcus et al. (Eds.), Museo Nacional de Ciencias Naturales (pp. 131-159). Madrid.
39. Rohlf, F. J., & Sokal, R. R. (1981). Comparing numerical taxonomic studies. Systematic Zoology, 30, 459-490.
40. Scherm, H., & Emery, K. M. (2003). Vegetative compatibility in populations of Monilinia fructicola from Georgia peach orchards. Acta Horticulturae, 592, 725-728.
41. Sica, M., Gamba, G., Montieri, S., Gaudio, L., & Aceto, S. (2005). ISSR markers show differentiation among Italian populations of Asparagus acutifolius L. BMC Genetics, 6, 17.
42. Sneath, P. H. A., & Sokal, R. R. (1973). Numerical taxonomy-the principles and practice of numerical classification. San Francisco: W. H. Freeman.
43. Villarino, M., Melgarejo, P., Usall, J., Segarra, J., & De Cal, A. (2010). Primary inoculum sources of Monilinia spp. in Spanish peach orchards and their relative importance in brown rot. Plant Disease, 94, 1048-1054.
44. Weger, J., Schanze, M., Hilber-Bodmer, M., Smits, T. H. M., & Patocchi, A. (2011). First report of the β-tubulin E198A Mutation conferring resistance to methyl benzimidazoles carbamates in European isolates of Monilinia fructicola. Plant Disease, 95, 497.
45. Wright, S. (1951). The genetical structure of populations. Annual Eugene, 15, 323-354.
46. Zhong, Y. F., Zhang, Y. W., Chen, X. Y., Luo, Y., & Guo, L. Y. (2008). Overwintering of Monilinia fructicola in Stone Fruit Orchards in Northern China. Journal of Phytopathology, 156, 229-235.
47. Zhou, S., Smith, D. R., & Stanosz, G. R. (2001). Differentiation of Botryosphaeria species and related anamorphic fungi using Inter Simple or Short Sequence Repeat (ISSR) fingerprinting. Mycological Research, 105, 919-926.