Distinct bacterial groups contribute to carbon cycling during a naturally iron fertilized phytoplankton bloom in the Southern Ocean

Limnology and Oceanography

Volumn 56, Issue 6, 2011, Pages 2391-2401

  Obernosterer, Ingrid ^a,b   Catala, Philippe ^a,b   Lebaron, Philippe ^a,b,c   West, Nyree J ^a,c  

^a SORBONNE UNIVERSITÉ   (France)

^b CNRS   (France)

^c LABORATOIRE ARAGO   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ABUNDANCE; ALGAL BLOOM; AMINO ACID; BACTERIUM; BIOGEOCHEMISTRY; BIOMASS; CARBON CYCLE; CHLOROPHYLL; IRON; NUTRIENT AVAILABILITY; PHYLOGENETICS; PHYTOPLANKTON;

SOUTHERN OCEAN;

ALGAE; BACTERIA (MICROORGANISMS); BACTEROIDETES; GAMMAPROTEOBACTERIA; OTUS; POLARIBACTER; RHODOBACTERACEAE; ROSEOBACTER;

EID: 84857769556     PISSN: 00243590     EISSN: None     Source Type: Journal    
DOI: 10.4319/lo.2011.56.6.2391     Document Type: Article

References (38)

1. ARMAND, L., V. CORNET-BARTHAUX, J. MOSSERI, and B. QUÉGUINER. 2008. Late summer diatom biomass and community structure on and around the naturally iron-fertilized Kerguelen Plateau in the Southern Ocean. Deep-Sea Res. II 55: 653-676, doi:10.1016/j.dsr2.2007.12.031
2. ARRIETA, J. M., M. WEINBAUER, C. LUTE, and G. HERNDL. 2004. Response of bacterioplankton to iron fertilization in the Southern Ocean. Limnol. Oceanogr. 49: 799-808, doi:10.4319/ lo.2004.49.3.0799
3. BLAIN, S., and OTHERS. 2007. Effect of natural iron fertilization on carbon sequestration in the Southern Ocean. Nature 446: 1070-1075, doi:10.1038/nature05700
4. BLAIN, S, G. SARTHOU, and P. LAAN. 2008. Distribution of dissolved iron during the natural iron-fertilization experiment KEOPS (Kerguelen Plateau, Southern Ocean). Deep-Sea Res. II 55: 594-605, doi:10.1016/j.dsr2.2007.12.028
5. BLAIN, S, G, P. TRE ́GUER, S. BELVISO, E. BUCCIARELLI, M. DENIS, S. DESABRE, M. FIALA, V. M. JEZEQUEL, J. LE FEVRE, P. MAYZAUD, J.-C. MARTY, and SUZANNE RAZOULS. 2001. A biogeochemical study of the island mass effect in the context of the iron hypothesis: Kerguelen Islands, Southern Ocean. Deep-Sea Res. I 48: 163-187, doi:10.1016/S0967-0637(00)00047-9
6. BOYD, P. W., and OTHERS. 2007. Mesoscale iron enrichment experiments 1993-2005: Synthesis and future directions. Science 315: 612-617, doi:10.1126/science.1131669
7. CHRISTAKI, U., I. OBERNOSTERER, F. V. WAMBEKE, M. VELDHUIS, N. GARCIA, and P. CATALA. 2008. Microbial food web structure in a naturally iron-fertilized area in the Southern Ocean (Kerguelen Plateau). Deep-Sea Res. II 55: 706-719, doi:10.1016/j.dsr2.2007.12.009
8. COLE, J., and OTHERS. 2009. The Ribosomal database project: Improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 37: D141-D145, doi:10.1093/nar/gkn879
9. COTTRELL, M., and D. KIRCHMAN. 2000. Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low-and high-molecularweight dissolved organic matter. Appl. Environ. Microbiol. 66: 1692-1697, doi:10.1128/AEM.66.4.1692-1697.2000
10. COTTRELL, M, and D. KIRCHMAN. 2003. Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware estuary. Limnol. Oceanogr. 48: 168-178, doi:10.4319/lo.2003.48.1.0168
11. DAIMS, H., A. BRUHL, R. AMANN, K. SCHLEIFER, and M. WAGNER. 1999. The domain-specific probe EUB 338 is insufficient for the detection of all bacteria: Development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22: 434-444.
12. EBERSBACH, F., and T. TRULL. 2008. Sinking particle properties from polyacrylamide gels during KEOPS: Controls on carbon export in an area of persistent natural iron inputs in the Southern Ocean. Limnol. Oceanogr. 53: 212-224, doi:10.4319/ lo.2008.53.1.0212
13. EILERS, H., J. PERNTHALER, F. O. GLOCKNER, and R. AMANN. 2000. Culturability an in situ abundance of pelagic bacteria from the north sea. Appl. Environ. Microbiol. 66: 3044-3051, doi:10.1128/AEM.66.7.3044-3051.2000
14. FUCHS, B., F. GLOECKNER, J. WULF, and R. AMANN. 2000. Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol. 66: 3603-3607, doi:10.1128/AEM.66.8.3603-3607.2000
15. GIEBEL, H., D. KALHOEFER, A. LEMKE, S. THOLE, R. GAHLJANSSEN, M. SIMON, and T. BRINKHOFF. 2011. Distribution of Roseobacter RCA and SAR11 lineages in the North Sea and characteristics of an abundant RCA isolate. ISME J 5: 8-19, doi:10.1038/ismej.2010.87
16. GLEDHILL, M., P. MCCORMACK, S. USSHER, E. ACHTERBERG, R. MANTOURA, and P. WORSFOLD. 2004. Production of side-rophore type chelates by mixed bacterioplankton populations in nutrient enriched seawater incubations. Mar. Chem. 88: 75-83, doi:10.1016/j.marchem.2004.03.003
17. JICKELLS, T., and OTHERS. 2005. Global iron connections between desert dust, ocean biogeochemistry, and climate. Science 308: 67-71, doi:10.1126/science.1105959
18. JOUANDET, M., T. TRULL, L. GUIDI, M. PICHERAL, F. EBERSBACH, L. STEMMANN, and S. BLAIN. 2011. Optical imaging of mesopelagic particles indicates deep carbon flux beneath a natural iron fertilized bloom in the Southern Ocean. Limnol. Oceanogr. 56: 1130-1140, doi:10.4319/lo.2011.56.3.1130
19. LUDWIG, W., O. STRUNK, R. WESTRAM, L. RICHTER, and H. MEIER. 2004. ARB: A software environment for sequence data. Nucleic Acids Res. 32: 1363-1371, doi:10.1093/nar/gkh293
20. MALMSTROM, R., T. STRAZA, M. COTTRELL, and D. KIRCHMAN. 2007. Diversity, abundance, and biomass production of bacterial groups in the western Arctic Ocean. Aquat. Microb. Ecol. 47: 45-55, doi:10.3354/ame047045
21. MAYALI, X., P. J. FRANKS, and F. AZAM. 2008. Cultivation and ecosystem role of a marine Roseobacter clade-affiliated cluster bacterium. Appl. Environ. Mirobiol. 74: 2595-2603, doi:10.1128/AEM.02191-07
22. MORRIS, M., M. RAPPÉ, S. CONNON, K. VERGIN, W. SIEBOLD, C. CARLSON, and S. GIOVANNONI. 2002. SAR11 clade dominates ocean surface bacterioplankton communities. Nature 420: 806-810, doi:10.1038/nature01240
23. MOSSERI, J., B. QUÉGUINER, L. ARMAND, and V. CORNET-BARTHAUX. 2008. Impact of iron on silicon utilization by diatoms in the Southern Ocean: A case study of Si/N cycle decoupling in a naturally iron-enriched area. Deep-Sea Res. II 55: 801-819, doi:10.1016/j.dsr2.2007.12.003
24. OBERNOSTERER, I., U. CHRISTAKI, D. LEFÈVRE, P. CATALA, F. V. WAMBEKE, and P. LEBARON. 2008. Rapid bacterial mineralization of organic carbon produced during a phytoplankton bloom induced by natural iron fertilization in the Southern Ocean. Deep-Sea Res. II 55: 777-789, doi:10.1016/ j.dsr2.2007.12.005
25. O'SULLIVAN, L. A., K. E. FULLER, E. M. THOMAS, C. M. TURLEY, J. C. FRY, and A. J. WEIGHTMAN. 2004. Distribution and culturability of the uncultivated 'AGG58 cluster' of the Bacteroidetes phylum in aquatic environments. FEMS Microb. Ecol. 47: 359-370, doi:10.1016/S0168-6496(03)00300-3
26. PINHASSI, J., R. SIMO, J. M. GONZALEZ, M. VILA, L. ALONSO-SAEZ, R. P. KIENE, M. A. MORAN, and C. PEDROS-ALIO. 2005. Dimethylsulfoniopropionate turnover is linked to the composition and dynamics of the bacterioplankton assemblage during a microcosm phytoplankton bloom. Appl. Environ. Microbiol. 71: 7650-7660, doi:10.1128/AEM.71.12.7650-7660.2005
27. POLLARD, R., and OTHERS. 2009. Southern Ocean deep-water carbon export enhanced by natural iron fertilization. Nature 457: 577-581, doi:10.1038/nature07716
28. PRUESSE, E., C. QUAST, K. KNITTEL, B. FUCHS, W. LUDWIG, J. PEPLIES, and F. O. GLOCKNER. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucl. Acids Res. 35: 7188-7196, doi:10.1093/nar/gkm864
29. RINK, B., S. SEEBERGER, T. MARTENS, C. DUERSELEN, M. SIMON, and T. BRINKHOFF. 2007. Effects of phytoplankton bloom in a coastal ecosystem on the composition of bacterial communities. Aquat. Microb. Ecol. 48: 47-60, doi:10.3354/ame048047
30. SEKAR, R., A. PERNTHALER, J. PERNTHALER, F. WARNECKE, T. POSCH, and R. AMANN. 2003. An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization. Appl. Environ. Microbiol. 69: 2928-2935, doi:10.1128/AEM.69.5.2928-2935.2003
31. SELJE, N., M. SIMON, and T. BRINKHOFF. 2004. A newly discovered Roseobacter cluster in temperate and polar oceans. Nature 427: 445-448, doi:10.1038/nature02272
32. STINGL, U., R. DESIDERIO, J. CHO, K. VERGIN, and S. GIOVANNONI. 2007. The SAR92 Clade: An abundant coastal clade of culturable marine bacteria possessing proteorhodopsin. Appl. Environ. Microbiol. 73: 2290-2296, doi:10.1128/AEM.02559-06
33. STRAZA, T., H. DUCKLOW, A. E. MURRAY, and D. KIRCHMAN. 2010. Abundance and single-cell activity of bacterial groups in Antarctic coastal waters. Limnol. Oceanogr. 55: 2526-2536, doi:10.4319/lo.2010.55.6.2526
34. TORTELL, P., M. MALDONADO, and N. PRICE. 1996. The role of heterotrophic bacteria in iron-limited ocean ecosystems. Nature 383: 330-332, doi:10.1038/383330a0
35. UITZ, J., H. CLAUSTRE, F. GRIFFITHS, J. RAS, N. GARCIA, and V. SANDRONI. 2009. A phytoplankton class-specific primary production model applied to the Kerguelen Islands region (Southern Ocean). Deep-Sea Res. I 56: 541-560, doi:10.1016/ j.dsr.2008.11.006
36. VAN HANNEN, E., W. MOOIJ, M. P. V. AGTERVELD, H. J. GONS, and H. J. LAANBROEK. 1999. Detritus-dependent development of the microbial community in an experimental system: Qualitative analysis by denaturating gradient gel electrophoresis. Appl. Environ. Microbiol. 65: 2478-2484.
37. WEST, N., I. OBERNOSTERER, O. ZEMB, and P. LEBARON. 2008. Major differences of bacterial diversity and activity inside and outside of a natural iron-fertilized phytoplankton bloom in the Southern Ocean. Environ. Microbiol. 10: 738-756, doi:10.1111/j.1462-2920.2007.01497.x
38. ZUBKOV, M., R. HOLLAND, P. BURKILL, I. CROUDACE, and P. WARWICK. 2007. Microbial abundance, activity and iron uptake in vicinity of the Crozet Isles in November 2004-January 2005. Deep-Sea Res. II 54: 2126-2137, doi:10.1016/j.dsr2.2007.06.020