메뉴 건너뛰기




Volumn 24, Issue 1, 2012, Pages 21-32

Pericentromeric effects shape the patterns of divergence, retention, and expression of duplicated genes in the paleopolyploid soybean

Author keywords

[No Author keywords available]

Indexed keywords

GLYCINE MAX; GLYCINE SOJA;

EID: 84857757793     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.111.092759     Document Type: Article
Times cited : (74)

References (80)
  • 1
    • 34447564992 scopus 로고    scopus 로고
    • Mutation rate variation in multicellular eukaryotes: Causes and consequences
    • Baer, C.F., Miyamoto, M.M., and Denver, D.R. (2007). Mutation rate variation in multicellular eukaryotes: causes and consequences. Nat. Rev. Genet. 8: 619-631.
    • (2007) Nat. Rev. Genet , vol.8 , pp. 619-631
    • Baer, C.F.1    Miyamoto, M.M.2    Denver, D.R.3
  • 2
    • 0026529344 scopus 로고
    • Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
    • Begun, D.J., and Aquadro, C.F. (1992). Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356: 519-520.
    • (1992) Nature , vol.356 , pp. 519-520
    • Begun, D.J.1    Aquadro, C.F.2
  • 4
    • 21644437476 scopus 로고    scopus 로고
    • Mechanisms of recent genome size variation in flowering plants
    • Bennetzen, J.L., Ma, J., and Devos, K.M. (2005). Mechanisms of recent genome size variation in flowering plants. Ann. Bot. (Lond.) 95: 127-132.
    • (2005) Ann. Bot. (Lond.) , vol.95 , pp. 127-132
    • Bennetzen, J.L.1    Ma, J.2    Devos, K.M.3
  • 5
    • 34250632677 scopus 로고    scopus 로고
    • The gene balance hypothesis: From classical genetics to modern genomics
    • Birchler, J.A., and Veitia, R.A. (2007). The gene balance hypothesis: From classical genetics to modern genomics. Plant Cell 19: 395-402.
    • (2007) Plant Cell , vol.19 , pp. 395-402
    • Birchler, J.A.1    Veitia, R.A.2
  • 6
    • 3142700743 scopus 로고    scopus 로고
    • Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
    • Blanc, G., and Wolfe, K.H. (2004). Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 16: 1667-1678.
    • (2004) Plant Cell , vol.16 , pp. 1667-1678
    • Blanc, G.1    Wolfe, K.H.2
  • 7
    • 85102323751 scopus 로고    scopus 로고
    • Genetic diversity in soybean
    • In Soybeans: Improvement, Production, and Uses, 3rd ed, H.R. Boerma and J.E. Specht, eds. Madison, WI: American Society of Agronomy
    • Carter, T.E., Nelson, R.L., Sneller, C.H., and Cui, Z. (2004). Genetic diversity in soybean. In Soybeans: Improvement, Production, and Uses, 3rd ed, H.R. Boerma and J.E. Specht, eds. Agron. Monogr. No. 16. (Madison, WI: American Society of Agronomy), pp. 303-416.
    • (2004) Agron. Monogr , Issue.16 , pp. 303-416
    • Carter, T.E.1    Nelson, R.L.2    Sneller, C.H.3    Cui, Z.4
  • 8
    • 31144465926 scopus 로고    scopus 로고
    • Hearing silence: Non-neutral evolution at synonymous sites in mammals
    • Chamary, J.V., Parmley, J.L., and Hurst, L.D. (2006). Hearing silence: Non-neutral evolution at synonymous sites in mammals. Nat. Rev. Genet. 7: 98-108.
    • (2006) Nat. Rev. Genet , vol.7 , pp. 98-108
    • Chamary, J.V.1    Parmley, J.L.2    Hurst, L.D.3
  • 9
    • 33751511166 scopus 로고    scopus 로고
    • Does lack of recombination enhance asymmetric evolution among duplicate genes? Insights from the Drosophila melanogaster genome
    • Clément, Y., Tavares, R., and Marais, G.A. (2006). Does lack of recombination enhance asymmetric evolution among duplicate genes? Insights from the Drosophila melanogaster genome. Gene 385: 89-95.
    • (2006) Gene , vol.385 , pp. 89-95
    • Clément, Y.1    Tavares, R.2    Marais, G.A.3
  • 11
    • 19344363466 scopus 로고    scopus 로고
    • Preferential duplication of conserved proteins in eukaryotic genomes
    • Davis, J.C., and Petrov, D.A. (2004). Preferential duplication of conserved proteins in eukaryotic genomes. PLoS Biol. 2: E55.
    • (2004) PLoS Biol , vol.2
    • Davis, J.C.1    Petrov, D.A.2
  • 13
    • 77950931395 scopus 로고    scopus 로고
    • Dating the origins of polyploidy events
    • Doyle, J.J., and Egan, A.N. (2010). Dating the origins of polyploidy events. New Phytol. 186: 73-85.
    • (2010) New Phytol , vol.186 , pp. 73-85
    • Doyle, J.J.1    Egan, A.N.2
  • 14
    • 77649149766 scopus 로고    scopus 로고
    • SoyTEdb: A comprehensive database of transposable elements in the soybean genome
    • Du, J., Grant, D., Tian, Z., Nelson, R.T., Zhu, L., Shoemaker, R.C., and Ma, J. (2010). SoyTEdb: A comprehensive database of transposable elements in the soybean genome. BMC Genomics 11: 113.
    • (2010) BMC Genomics , vol.11 , pp. 113
    • Du, J.1    Grant, D.2    Tian, Z.3    Nelson, R.T.4    Zhu, L.5    Shoemaker, R.C.6    Ma, J.7
  • 15
    • 61349094161 scopus 로고    scopus 로고
    • Mutation patterns in the human genome: More variable than expected
    • Duret, L. (2009). Mutation patterns in the human genome: More variable than expected. PLoS Biol. 7: e1000028.
    • (2009) PLoS Biol , vol.7
    • Duret, L.1
  • 16
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: A multiple sequence alignment method with reduced time and space complexity
    • Edgar, R.C. (2004). MUSCLE: A multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 17
    • 70349682921 scopus 로고    scopus 로고
    • Gene and genome duplications: The impact of dosage-sensitivity on the fate of nuclear genes
    • Edger, P.P., and Pires, J.C. (2009). Gene and genome duplications: The impact of dosage-sensitivity on the fate of nuclear genes. Chromosome Res. 17: 699-717.
    • (2009) Chromosome Res , vol.17 , pp. 699-717
    • Edger, P.P.1    Pires, J.C.2
  • 19
    • 80053209174 scopus 로고    scopus 로고
    • Conservation and purifying selection of transcribed genes located in a rice centromere
    • Fan, C., Walling, J.G., Zhang, J., Hirsch, C.D., Jiang, J., and Wing, R.A. (2011). Conservation and purifying selection of transcribed genes located in a rice centromere. Plant Cell 23: 2821-2830.
    • (2011) Plant Cell , vol.23 , pp. 2821-2830
    • Fan, C.1    Walling, J.G.2    Zhang, J.3    Hirsch, C.D.4    Jiang, J.5    Wing, R.A.6
  • 20
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • Force, A., Lynch, M., Pickett, F.B., Amores, A., Yan, Y.L., and Postlethwait, J. (1999). Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.L.5    Postlethwait, J.6
  • 21
    • 57149114784 scopus 로고    scopus 로고
    • The evolutionary position of subfunctionalization, downgraded
    • Freeling, M. (2008). The evolutionary position of subfunctionalization, downgraded. Genome Dyn. 4: 25-40.
    • (2008) Genome Dyn , vol.4 , pp. 25-40
    • Freeling, M.1
  • 22
    • 57149120510 scopus 로고    scopus 로고
    • Many or most genes in Arabidopsis transposed after the origin of the order Brassicales
    • Freeling, M., Lyons, E., Pedersen, B., Alam, M., Ming, R., and Lisch, D. (2008). Many or most genes in Arabidopsis transposed after the origin of the order Brassicales. Genome Res. 18: 1924-1937.
    • (2008) Genome Res , vol.18 , pp. 1924-1937
    • Freeling, M.1    Lyons, E.2    Pedersen, B.3    Alam, M.4    Ming, R.5    Lisch, D.6
  • 23
    • 33845768012 scopus 로고    scopus 로고
    • Recombination: An underappreciated factor in the evolution of plant genomes
    • Gaut, B.S., Wright, S.I., Rizzon, C., Dvorak, J., and Anderson, L.K. (2007). Recombination: An underappreciated factor in the evolution of plant genomes. Nat. Rev. Genet. 8: 77-84.
    • (2007) Nat. Rev. Genet , vol.8 , pp. 77-84
    • Gaut, B.S.1    Wright, S.I.2    Rizzon, C.3    Dvorak, J.4    Anderson, L.K.5
  • 25
    • 14144255920 scopus 로고    scopus 로고
    • Rapid evolution of expression and regulatory divergences after yeast gene duplication
    • Gu, X., Zhang, Z., and Huang, W. (2005). Rapid evolution of expression and regulatory divergences after yeast gene duplication. Proc. Natl. Acad. Sci. USA 102: 707-712.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 707-712
    • Gu, X.1    Zhang, Z.2    Huang, W.3
  • 26
    • 60549090058 scopus 로고    scopus 로고
    • Duplicate genes increase expression diversity in closely related species and allopolyploids
    • Ha, M., Kim, E.D., and Chen, Z.J. (2009). Duplicate genes increase expression diversity in closely related species and allopolyploids. Proc. Natl. Acad. Sci. USA 106: 2295-2300.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 2295-2300
    • Ha, M.1    Kim, E.D.2    Chen, Z.J.3
  • 28
    • 20144374141 scopus 로고    scopus 로고
    • Gene complexity and gene duplicability
    • He, X., and Zhang, J. (2005). Gene complexity and gene duplicability. Curr. Biol. 15: 1016-1021.
    • (2005) Curr. Biol , vol.15 , pp. 1016-1021
    • He, X.1    Zhang, J.2
  • 29
    • 0013979181 scopus 로고
    • The effect of linkage on limits to artificial selection
    • Hill, W.G., and Robertson, A. (1966). The effect of linkage on limits to artificial selection. Genet. Res. 8: 269-294.
    • (1966) Genet. Res , vol.8 , pp. 269-294
    • Hill, W.G.1    Robertson, A.2
  • 30
    • 68149144366 scopus 로고    scopus 로고
    • Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
    • Hollister, J., and Gaut, B.S. (2009). Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression. Genome Res. 19: 1419-1428.
    • (2009) Genome Res , vol.19 , pp. 1419-1428
    • Hollister, J.1    Gaut, B.S.2
  • 31
    • 0036720020 scopus 로고    scopus 로고
    • The Ka/Ks ratio: Diagnosing the form of sequence evolution
    • Hurst, L.D. (2002). The Ka/Ks ratio: Diagnosing the form of sequence evolution. Trends Genet. 18: 486.
    • (2002) Trends Genet , vol.18 , pp. 486
    • Hurst, L.D.1
  • 32
    • 76749130701 scopus 로고    scopus 로고
    • High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
    • Hyten, D.L., Cannon, S.B., Song, Q., Weeks, N., Fickus, E.W., Shoemaker, R.C., Specht, J.E., Farmer, A.D., May, G.D., and Cregan, P.B. (2010). High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics 11: 38.
    • (2010) BMC Genomics , vol.11 , pp. 38
    • Hyten, D.L.1    Cannon, S.B.2    Song, Q.3    Weeks, N.4    Fickus, E.W.5    Shoemaker, R.C.6    Specht, J.E.7    Farmer, A.D.8    May, G.D.9    Cregan, P.B.10
  • 33
    • 1642340148 scopus 로고    scopus 로고
    • Meiotic recombination between paralogous RBCSB genes on sister chromatids of Arabidopsis thaliana
    • Jelesko, J.G., Carter, K., Thompson, W., Kinoshita, Y., and Gruissem, W. (2004). Meiotic recombination between paralogous RBCSB genes on sister chromatids of Arabidopsis thaliana. Genetics 166: 947-957.
    • (2004) Genetics , vol.166 , pp. 947-957
    • Jelesko, J.G.1    Carter, K.2    Thompson, W.3    Kinoshita, Y.4    Gruissem, W.5
  • 34
    • 79955630390 scopus 로고    scopus 로고
    • Ancestral polyploidy in seed plants and angiosperms
    • Jiao, Y., et al. (2011). Ancestral polyploidy in seed plants and angiosperms. Nature 473: 97-100.
    • (2011) Nature , vol.473 , pp. 97-100
    • Jiao, Y.1
  • 35
    • 8744268628 scopus 로고    scopus 로고
    • Duplicated genes evolve slower than singletons despite the initial rate increase
    • Jordan, I.K., Wolf, Y.I., and Koonin, E.V. (2004). Duplicated genes evolve slower than singletons despite the initial rate increase. BMC Evol. Biol. 4: 22.
    • (2004) BMC Evol. Biol , vol.4 , pp. 22
    • Jordan, I.K.1    Wolf, Y.I.2    Koonin, E.V.3
  • 37
    • 78650668282 scopus 로고    scopus 로고
    • Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome
    • Kim, M.Y., et al. (2010). Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome. Proc. Natl. Acad. Sci. USA 107: 22032-22037.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 22032-22037
    • Kim, M.Y.1
  • 38
    • 0014421064 scopus 로고
    • Evolutionary rate at the molecular level
    • Kimura, M. (1968). Evolutionary rate at the molecular level. Nature 217: 624-626.
    • (1968) Nature , vol.217 , pp. 624-626
    • Kimura, M.1
  • 39
    • 0345107239 scopus 로고    scopus 로고
    • Selection in the evolution of gene duplications
    • research0008.1-research0008.9
    • Kondrashov, F.A., Rogozin, I.B., Wolf, Y.I., and Koonin, E.V. (2002). Selection in the evolution of gene duplications. Genome Biol. 3: research0008.1-research0008.9.
    • (2002) Genome Biol , vol.3
    • Kondrashov, F.A.1    Rogozin, I.B.2    Wolf, Y.I.3    Koonin, E.V.4
  • 41
    • 78649479141 scopus 로고    scopus 로고
    • Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection
    • Lam, H.M., et al. (2010). Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nat. Genet. 42: 1053-1059.
    • (2010) Nat. Genet , vol.42 , pp. 1053-1059
    • Lam, H.M.1
  • 42
    • 0036640951 scopus 로고    scopus 로고
    • Human SNP variability and mutation rate are higher in regions of high recombination
    • Lercher, M.J., and Hurst, L.D. (2002). Human SNP variability and mutation rate are higher in regions of high recombination. Trends Genet. 18: 337-340.
    • (2002) Trends Genet , vol.18 , pp. 337-340
    • Lercher, M.J.1    Hurst, L.D.2
  • 43
  • 44
    • 77957764187 scopus 로고    scopus 로고
    • Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris
    • Lin, J.Y., Stupar, R.M., Hans, C., Hyten, D.L., and Jackson, S.A. (2010). Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris. Plant Cell 22: 2545-2561.
    • (2010) Plant Cell , vol.22 , pp. 2545-2561
    • Lin, J.Y.1    Stupar, R.M.2    Hans, C.3    Hyten, D.L.4    Jackson, S.A.5
  • 46
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch, M., and Conery, J.S. (2000). The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 47
    • 0345306751 scopus 로고    scopus 로고
    • The origins of genome complexity
    • Lynch, M., and Conery, J.S. (2003). The origins of genome complexity. Science 302: 1401-1404.
    • (2003) Science , vol.302 , pp. 1401-1404
    • Lynch, M.1    Conery, J.S.2
  • 48
    • 0033972072 scopus 로고    scopus 로고
    • The probability of duplicate gene preservation by subfunctionalization
    • Lynch, M., and Force, A. (2000). The probability of duplicate gene preservation by subfunctionalization. Genetics 154: 459-473.
    • (2000) Genetics , vol.154 , pp. 459-473
    • Lynch, M.1    Force, A.2
  • 51
    • 0034500239 scopus 로고    scopus 로고
    • Polyploid incidence and evolution
    • Otto, S.P., and Whitton, J. (2000). Polyploid incidence and evolution. Annu. Rev. Genet. 34: 401-437.
    • (2000) Annu. Rev. Genet , vol.34 , pp. 401-437
    • Otto, S.P.1    Whitton, J.2
  • 52
    • 34548595490 scopus 로고    scopus 로고
    • MareyMap: An R-based tool with graphical interface for estimating recombination rates
    • Rezvoy, C., Charif, D., Guéguen, L., and Marais, G.A. (2007). MareyMap: An R-based tool with graphical interface for estimating recombination rates. Bioinformatics 23: 2188-2189.
    • (2007) Bioinformatics , vol.23 , pp. 2188-2189
    • Rezvoy, C.1    Charif, D.2    Guéguen, L.3    Marais, G.A.4
  • 54
    • 33750446284 scopus 로고    scopus 로고
    • Sequence conservation of homeologous BACs and expression of homeologous genes in soybean (Glycine max L Merr)
    • Schlueter, J.A., Scheffler, B.E., Schlueter, S.D., and Shoemaker, R.C. (2006). Sequence conservation of homeologous BACs and expression of homeologous genes in soybean (Glycine max L Merr). Genetics 174: 1017-1028.
    • (2006) Genetics , vol.174 , pp. 1017-1028
    • Schlueter, J.A.1    Scheffler, B.E.2    Schlueter, S.D.3    Shoemaker, R.C.4
  • 55
    • 74549221016 scopus 로고    scopus 로고
    • Genome sequence of the palaeopolyploid soybean
    • Schmutz, J., et al. (2010). Genome sequence of the palaeopolyploid soybean. Nature 463: 178-183.
    • (2010) Nature , vol.463 , pp. 178-183
    • Schmutz, J.1
  • 56
    • 79952744855 scopus 로고    scopus 로고
    • Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
    • Schnable, J.C., Springer, N.M., and Freeling, M. (2011). Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc. Natl. Acad. Sci. USA 108: 4069-4074.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 4069-4074
    • Schnable, J.C.1    Springer, N.M.2    Freeling, M.3
  • 57
    • 13944266797 scopus 로고    scopus 로고
    • The dual nature of homologous recombination in plants
    • Schuermann, D., Molinier, J., Fritsch, O., and Hohn, B. (2005). The dual nature of homologous recombination in plants. Trends Genet. 21: 172-181.
    • (2005) Trends Genet , vol.21 , pp. 172-181
    • Schuermann, D.1    Molinier, J.2    Fritsch, O.3    Hohn, B.4
  • 58
    • 36549038087 scopus 로고    scopus 로고
    • Consequences of genome duplication
    • Sémon, M., and Wolfe, K.H. (2007). Consequences of genome duplication. Curr. Opin. Genet. Dev. 17: 505-512.
    • (2007) Curr. Opin. Genet. Dev , vol.17 , pp. 505-512
    • Sémon, M.1    Wolfe, K.H.2
  • 59
    • 4444363053 scopus 로고    scopus 로고
    • Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome
    • Seoighe, C., and Gehring, C. (2004). Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome. Trends Genet. 20: 461-464.
    • (2004) Trends Genet , vol.20 , pp. 461-464
    • Seoighe, C.1    Gehring, C.2
  • 60
    • 80054996709 scopus 로고    scopus 로고
    • Changes in twelve homoeologous genomic regions in soybean following three rounds of polyploidy
    • Severin, A.J., Cannon, S.B., Graham, M.M., Grant, D., and Shoemaker, R.C. (2011). Changes in twelve homoeologous genomic regions in soybean following three rounds of polyploidy. Plant Cell 23: 3129-3136.
    • (2011) Plant Cell , vol.23 , pp. 3129-3136
    • Severin, A.J.1    Cannon, S.B.2    Graham, M.M.3    Grant, D.4    Shoemaker, R.C.5
  • 61
    • 0033198094 scopus 로고    scopus 로고
    • Polyploidy: Recurrent formation and genome evolution
    • Soltis, D.E., and Soltis, P.S. (1999). Polyploidy: Recurrent formation and genome evolution. Trends Ecol. Evol. (Amst.) 14: 348-352.
    • (1999) Trends Ecol. Evol. (Amst.) , vol.14 , pp. 348-352
    • Soltis, D.E.1    Soltis, P.S.2
  • 62
    • 67651052323 scopus 로고    scopus 로고
    • The role of hybridization in plant speciation
    • Soltis, P.S., and Soltis, D.E. (2009). The role of hybridization in plant speciation. Annu. Rev. Plant Biol. 60: 561-588.
    • (2009) Annu. Rev. Plant Biol , vol.60 , pp. 561-588
    • Soltis, P.S.1    Soltis, D.E.2
  • 64
    • 78751614080 scopus 로고    scopus 로고
    • Histone H3K4 methylation keeps centromeres open for business
    • Stimpson, K.M., and Sullivan, B.A. (2011). Histone H3K4 methylation keeps centromeres open for business. EMBO J. 30: 233-234.
    • (2011) EMBO J , vol.30 , pp. 233-234
    • Stimpson, K.M.1    Sullivan, B.A.2
  • 66
    • 33745617700 scopus 로고    scopus 로고
    • Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
    • Thomas, B.C., Pedersen, B., and Freeling, M. (2006). Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes. Genome Res. 16: 934-946.
    • (2006) Genome Res , vol.16 , pp. 934-946
    • Thomas, B.C.1    Pedersen, B.2    Freeling, M.3
  • 67
    • 73249153383 scopus 로고    scopus 로고
    • Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?
    • Tian, Z., Rizzon, C., Du, J., Zhu, L., Bennetzen, J.L., Jackson, S.A., Gaut, B.S., and Ma, J. (2009). Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons? Genome Res. 19: 2221-2230.
    • (2009) Genome Res , vol.19 , pp. 2221-2230
    • Tian, Z.1    Rizzon, C.2    Du, J.3    Zhu, L.4    Bennetzen, J.L.5    Jackson, S.A.6    Gaut, B.S.7    Ma, J.8
  • 68
    • 48949115115 scopus 로고    scopus 로고
    • Cellular reactions to gene dosage imbalance: Genomic, transcriptomic and proteomic effects
    • Veitia, R.A., Bottani, S., and Birchler, J.A. (2008). Cellular reactions to gene dosage imbalance: Genomic, transcriptomic and proteomic effects. Trends Genet. 24: 390-397.
    • (2008) Trends Genet , vol.24 , pp. 390-397
    • Veitia, R.A.1    Bottani, S.2    Birchler, J.A.3
  • 69
    • 0028893838 scopus 로고
    • How often do duplicated genes evolve new functions?
    • Walsh, J.B. (1995). How often do duplicated genes evolve new functions? Genetics 139: 421-428.
    • (1995) Genetics , vol.139 , pp. 421-428
    • Walsh, J.B.1
  • 71
    • 18744398427 scopus 로고    scopus 로고
    • Centromeric heterochromatin comes clean with DNA methylation
    • Warburton, P.E. (2004). Centromeric heterochromatin comes clean with DNA methylation. Nature Methods 1: 14-15.
    • (2004) Nature Methods , vol.1 , pp. 14-15
    • Warburton, P.E.1
  • 72
    • 0033974956 scopus 로고    scopus 로고
    • Genome evolution in polyploids
    • Wendel, J.F. (2000). Genome evolution in polyploids. Plant Mol. Biol. 42: 225-249.
    • (2000) Plant Mol. Biol , vol.42 , pp. 225-249
    • Wendel, J.F.1
  • 73
    • 0035344021 scopus 로고    scopus 로고
    • Yesterday's polyploids and the mystery of diploidization
    • Wolfe, K.H. (2001). Yesterday's polyploids and the mystery of diploidization. Nat. Rev. Genet. 2: 333-341.
    • (2001) Nat. Rev. Genet , vol.2 , pp. 333-341
    • Wolfe, K.H.1
  • 74
    • 0037370306 scopus 로고    scopus 로고
    • Molecular evolution meets the genomics revolution
    • Wolfe, K.H., and Li, W.H. (2003). Molecular evolution meets the genomics revolution. Nat. Genet. 33(Suppl): 255-265.
    • (2003) Nat. Genet , vol.33 , Issue.SUPPL. , pp. 255-265
    • Wolfe, K.H.1    Li, W.H.2
  • 75
    • 77954741256 scopus 로고    scopus 로고
    • Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs
    • Woodhouse, M.R., Schnable, J.C., Pedersen, B.S., Lyons, E., Lisch, D., Subramaniam, S., and Freeling, M. (2010). Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs. PLoS Biol. 8: e1000409.
    • (2010) PLoS Biol , vol.8
    • Woodhouse, M.R.1    Schnable, J.C.2    Pedersen, B.S.3    Lyons, E.4    Lisch, D.5    Subramaniam, S.6    Freeling, M.7
  • 76
    • 0038708556 scopus 로고    scopus 로고
    • Rate of protein evolution versus fitness effect of gene deletion
    • Yang, J., Gu, Z., and Li, W.H. (2003). Rate of protein evolution versus fitness effect of gene deletion. Mol. Biol. Evol. 20: 772-774.
    • (2003) Mol. Biol. Evol , vol.20 , pp. 772-774
    • Yang, J.1    Gu, Z.2    Li, W.H.3
  • 77
    • 79961064486 scopus 로고    scopus 로고
    • Factors that contribute to variation in evolutionary rate among Arabidopsis genes
    • Yang, L., and Gaut, B.S. (2011). Factors that contribute to variation in evolutionary rate among Arabidopsis genes. Mol. Biol. Evol. 28: 2359-2369.
    • (2011) Mol. Biol. Evol , vol.28 , pp. 2359-2369
    • Yang, L.1    Gaut, B.S.2
  • 78
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang, Z. (2007). PAML 4: Phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24: 1586-1591.
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 79
    • 66949124248 scopus 로고    scopus 로고
    • Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays
    • Zeller, G., Henz, S.R., Widmer, C.K., Sachsenberg, T., Rätsch, G., Weigel, D., and Laubinger, S. (2009). Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays. Plant J. 58: 1068-1082.
    • (2009) Plant J , vol.58 , pp. 1068-1082
    • Zeller, G.1    Henz, S.R.2    Widmer, C.K.3    Sachsenberg, T.4    Rätsch, G.5    Weigel, D.6    Laubinger, S.7
  • 80
    • 77951871117 scopus 로고    scopus 로고
    • Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
    • Zhang, G., et al. (2010). Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Res. 20: 646-654.
    • (2010) Genome Res , vol.20 , pp. 646-654
    • Zhang, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.