-
1
-
-
34447564992
-
Mutation rate variation in multicellular eukaryotes: Causes and consequences
-
Baer, C.F., Miyamoto, M.M., and Denver, D.R. (2007). Mutation rate variation in multicellular eukaryotes: causes and consequences. Nat. Rev. Genet. 8: 619-631.
-
(2007)
Nat. Rev. Genet
, vol.8
, pp. 619-631
-
-
Baer, C.F.1
Miyamoto, M.M.2
Denver, D.R.3
-
2
-
-
0026529344
-
Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
-
Begun, D.J., and Aquadro, C.F. (1992). Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356: 519-520.
-
(1992)
Nature
, vol.356
, pp. 519-520
-
-
Begun, D.J.1
Aquadro, C.F.2
-
3
-
-
78649817356
-
Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana
-
Beilstein, M.A., Nagalingum, N.S., Clements, M.D., Manchester, S.R., and Mathews, S. (2010). Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 107: 18724-18728.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 18724-18728
-
-
Beilstein, M.A.1
Nagalingum, N.S.2
Clements, M.D.3
Manchester, S.R.4
Mathews, S.5
-
4
-
-
21644437476
-
Mechanisms of recent genome size variation in flowering plants
-
Bennetzen, J.L., Ma, J., and Devos, K.M. (2005). Mechanisms of recent genome size variation in flowering plants. Ann. Bot. (Lond.) 95: 127-132.
-
(2005)
Ann. Bot. (Lond.)
, vol.95
, pp. 127-132
-
-
Bennetzen, J.L.1
Ma, J.2
Devos, K.M.3
-
5
-
-
34250632677
-
The gene balance hypothesis: From classical genetics to modern genomics
-
Birchler, J.A., and Veitia, R.A. (2007). The gene balance hypothesis: From classical genetics to modern genomics. Plant Cell 19: 395-402.
-
(2007)
Plant Cell
, vol.19
, pp. 395-402
-
-
Birchler, J.A.1
Veitia, R.A.2
-
6
-
-
3142700743
-
Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
-
Blanc, G., and Wolfe, K.H. (2004). Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 16: 1667-1678.
-
(2004)
Plant Cell
, vol.16
, pp. 1667-1678
-
-
Blanc, G.1
Wolfe, K.H.2
-
7
-
-
85102323751
-
Genetic diversity in soybean
-
In Soybeans: Improvement, Production, and Uses, 3rd ed, H.R. Boerma and J.E. Specht, eds. Madison, WI: American Society of Agronomy
-
Carter, T.E., Nelson, R.L., Sneller, C.H., and Cui, Z. (2004). Genetic diversity in soybean. In Soybeans: Improvement, Production, and Uses, 3rd ed, H.R. Boerma and J.E. Specht, eds. Agron. Monogr. No. 16. (Madison, WI: American Society of Agronomy), pp. 303-416.
-
(2004)
Agron. Monogr
, Issue.16
, pp. 303-416
-
-
Carter, T.E.1
Nelson, R.L.2
Sneller, C.H.3
Cui, Z.4
-
8
-
-
31144465926
-
Hearing silence: Non-neutral evolution at synonymous sites in mammals
-
Chamary, J.V., Parmley, J.L., and Hurst, L.D. (2006). Hearing silence: Non-neutral evolution at synonymous sites in mammals. Nat. Rev. Genet. 7: 98-108.
-
(2006)
Nat. Rev. Genet
, vol.7
, pp. 98-108
-
-
Chamary, J.V.1
Parmley, J.L.2
Hurst, L.D.3
-
9
-
-
33751511166
-
Does lack of recombination enhance asymmetric evolution among duplicate genes? Insights from the Drosophila melanogaster genome
-
Clément, Y., Tavares, R., and Marais, G.A. (2006). Does lack of recombination enhance asymmetric evolution among duplicate genes? Insights from the Drosophila melanogaster genome. Gene 385: 89-95.
-
(2006)
Gene
, vol.385
, pp. 89-95
-
-
Clément, Y.1
Tavares, R.2
Marais, G.A.3
-
10
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus, S.J., Feng, S., Zhang, X., Chen, Z., Merriman, B., Haudenschild, C.D., Pradhan, S., Nelson, S.F., Pellegrini, M., and Jacobsen, S.E. (2008). Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 452: 215-219.
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
Chen, Z.4
Merriman, B.5
Haudenschild, C.D.6
Pradhan, S.7
Nelson, S.F.8
Pellegrini, M.9
Jacobsen, S.E.10
-
11
-
-
19344363466
-
Preferential duplication of conserved proteins in eukaryotic genomes
-
Davis, J.C., and Petrov, D.A. (2004). Preferential duplication of conserved proteins in eukaryotic genomes. PLoS Biol. 2: E55.
-
(2004)
PLoS Biol
, vol.2
-
-
Davis, J.C.1
Petrov, D.A.2
-
12
-
-
27144519666
-
Genome duplication and the origin of angiosperms
-
De Bodt, S., Maere, S., and Van de Peer, Y. (2005). Genome duplication and the origin of angiosperms. Trends Ecol. Evol. (Amst.) 20: 591-597.
-
(2005)
Trends Ecol. Evol. (Amst.)
, vol.20
, pp. 591-597
-
-
de Bodt, S.1
Maere, S.2
van de Peer, Y.3
-
13
-
-
77950931395
-
Dating the origins of polyploidy events
-
Doyle, J.J., and Egan, A.N. (2010). Dating the origins of polyploidy events. New Phytol. 186: 73-85.
-
(2010)
New Phytol
, vol.186
, pp. 73-85
-
-
Doyle, J.J.1
Egan, A.N.2
-
14
-
-
77649149766
-
SoyTEdb: A comprehensive database of transposable elements in the soybean genome
-
Du, J., Grant, D., Tian, Z., Nelson, R.T., Zhu, L., Shoemaker, R.C., and Ma, J. (2010). SoyTEdb: A comprehensive database of transposable elements in the soybean genome. BMC Genomics 11: 113.
-
(2010)
BMC Genomics
, vol.11
, pp. 113
-
-
Du, J.1
Grant, D.2
Tian, Z.3
Nelson, R.T.4
Zhu, L.5
Shoemaker, R.C.6
Ma, J.7
-
15
-
-
61349094161
-
Mutation patterns in the human genome: More variable than expected
-
Duret, L. (2009). Mutation patterns in the human genome: More variable than expected. PLoS Biol. 7: e1000028.
-
(2009)
PLoS Biol
, vol.7
-
-
Duret, L.1
-
16
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar, R.C. (2004). MUSCLE: A multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
17
-
-
70349682921
-
Gene and genome duplications: The impact of dosage-sensitivity on the fate of nuclear genes
-
Edger, P.P., and Pires, J.C. (2009). Gene and genome duplications: The impact of dosage-sensitivity on the fate of nuclear genes. Chromosome Res. 17: 699-717.
-
(2009)
Chromosome Res
, vol.17
, pp. 699-717
-
-
Edger, P.P.1
Pires, J.C.2
-
18
-
-
0345447463
-
Mutation rate variation in the mammalian genome
-
Ellegren, H., Smith, N.G., and Webster, M.T. (2003). Mutation rate variation in the mammalian genome. Curr. Opin. Genet. Dev. 13: 562-568.
-
(2003)
Curr. Opin. Genet. Dev
, vol.13
, pp. 562-568
-
-
Ellegren, H.1
Smith, N.G.2
Webster, M.T.3
-
19
-
-
80053209174
-
Conservation and purifying selection of transcribed genes located in a rice centromere
-
Fan, C., Walling, J.G., Zhang, J., Hirsch, C.D., Jiang, J., and Wing, R.A. (2011). Conservation and purifying selection of transcribed genes located in a rice centromere. Plant Cell 23: 2821-2830.
-
(2011)
Plant Cell
, vol.23
, pp. 2821-2830
-
-
Fan, C.1
Walling, J.G.2
Zhang, J.3
Hirsch, C.D.4
Jiang, J.5
Wing, R.A.6
-
20
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force, A., Lynch, M., Pickett, F.B., Amores, A., Yan, Y.L., and Postlethwait, J. (1999). Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.L.5
Postlethwait, J.6
-
21
-
-
57149114784
-
The evolutionary position of subfunctionalization, downgraded
-
Freeling, M. (2008). The evolutionary position of subfunctionalization, downgraded. Genome Dyn. 4: 25-40.
-
(2008)
Genome Dyn
, vol.4
, pp. 25-40
-
-
Freeling, M.1
-
22
-
-
57149120510
-
Many or most genes in Arabidopsis transposed after the origin of the order Brassicales
-
Freeling, M., Lyons, E., Pedersen, B., Alam, M., Ming, R., and Lisch, D. (2008). Many or most genes in Arabidopsis transposed after the origin of the order Brassicales. Genome Res. 18: 1924-1937.
-
(2008)
Genome Res
, vol.18
, pp. 1924-1937
-
-
Freeling, M.1
Lyons, E.2
Pedersen, B.3
Alam, M.4
Ming, R.5
Lisch, D.6
-
23
-
-
33845768012
-
Recombination: An underappreciated factor in the evolution of plant genomes
-
Gaut, B.S., Wright, S.I., Rizzon, C., Dvorak, J., and Anderson, L.K. (2007). Recombination: An underappreciated factor in the evolution of plant genomes. Nat. Rev. Genet. 8: 77-84.
-
(2007)
Nat. Rev. Genet
, vol.8
, pp. 77-84
-
-
Gaut, B.S.1
Wright, S.I.2
Rizzon, C.3
Dvorak, J.4
Anderson, L.K.5
-
24
-
-
70350630311
-
Molecular and chromosomal evidence for allopolyploidy in soybean
-
Gill, N., Findley, S., Walling, J.G., Hans, C., Ma, J., Doyle, J., Stacey, G., and Jackson, S.A. (2009). Molecular and chromosomal evidence for allopolyploidy in soybean. Plant Physiol. 151: 1167-1174.
-
(2009)
Plant Physiol
, vol.151
, pp. 1167-1174
-
-
Gill, N.1
Findley, S.2
Walling, J.G.3
Hans, C.4
Ma, J.5
Doyle, J.6
Stacey, G.7
Jackson, S.A.8
-
25
-
-
14144255920
-
Rapid evolution of expression and regulatory divergences after yeast gene duplication
-
Gu, X., Zhang, Z., and Huang, W. (2005). Rapid evolution of expression and regulatory divergences after yeast gene duplication. Proc. Natl. Acad. Sci. USA 102: 707-712.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 707-712
-
-
Gu, X.1
Zhang, Z.2
Huang, W.3
-
26
-
-
60549090058
-
Duplicate genes increase expression diversity in closely related species and allopolyploids
-
Ha, M., Kim, E.D., and Chen, Z.J. (2009). Duplicate genes increase expression diversity in closely related species and allopolyploids. Proc. Natl. Acad. Sci. USA 106: 2295-2300.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 2295-2300
-
-
Ha, M.1
Kim, E.D.2
Chen, Z.J.3
-
28
-
-
20144374141
-
Gene complexity and gene duplicability
-
He, X., and Zhang, J. (2005). Gene complexity and gene duplicability. Curr. Biol. 15: 1016-1021.
-
(2005)
Curr. Biol
, vol.15
, pp. 1016-1021
-
-
He, X.1
Zhang, J.2
-
29
-
-
0013979181
-
The effect of linkage on limits to artificial selection
-
Hill, W.G., and Robertson, A. (1966). The effect of linkage on limits to artificial selection. Genet. Res. 8: 269-294.
-
(1966)
Genet. Res
, vol.8
, pp. 269-294
-
-
Hill, W.G.1
Robertson, A.2
-
30
-
-
68149144366
-
Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
-
Hollister, J., and Gaut, B.S. (2009). Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression. Genome Res. 19: 1419-1428.
-
(2009)
Genome Res
, vol.19
, pp. 1419-1428
-
-
Hollister, J.1
Gaut, B.S.2
-
31
-
-
0036720020
-
The Ka/Ks ratio: Diagnosing the form of sequence evolution
-
Hurst, L.D. (2002). The Ka/Ks ratio: Diagnosing the form of sequence evolution. Trends Genet. 18: 486.
-
(2002)
Trends Genet
, vol.18
, pp. 486
-
-
Hurst, L.D.1
-
32
-
-
76749130701
-
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
-
Hyten, D.L., Cannon, S.B., Song, Q., Weeks, N., Fickus, E.W., Shoemaker, R.C., Specht, J.E., Farmer, A.D., May, G.D., and Cregan, P.B. (2010). High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics 11: 38.
-
(2010)
BMC Genomics
, vol.11
, pp. 38
-
-
Hyten, D.L.1
Cannon, S.B.2
Song, Q.3
Weeks, N.4
Fickus, E.W.5
Shoemaker, R.C.6
Specht, J.E.7
Farmer, A.D.8
May, G.D.9
Cregan, P.B.10
-
33
-
-
1642340148
-
Meiotic recombination between paralogous RBCSB genes on sister chromatids of Arabidopsis thaliana
-
Jelesko, J.G., Carter, K., Thompson, W., Kinoshita, Y., and Gruissem, W. (2004). Meiotic recombination between paralogous RBCSB genes on sister chromatids of Arabidopsis thaliana. Genetics 166: 947-957.
-
(2004)
Genetics
, vol.166
, pp. 947-957
-
-
Jelesko, J.G.1
Carter, K.2
Thompson, W.3
Kinoshita, Y.4
Gruissem, W.5
-
34
-
-
79955630390
-
Ancestral polyploidy in seed plants and angiosperms
-
Jiao, Y., et al. (2011). Ancestral polyploidy in seed plants and angiosperms. Nature 473: 97-100.
-
(2011)
Nature
, vol.473
, pp. 97-100
-
-
Jiao, Y.1
-
35
-
-
8744268628
-
Duplicated genes evolve slower than singletons despite the initial rate increase
-
Jordan, I.K., Wolf, Y.I., and Koonin, E.V. (2004). Duplicated genes evolve slower than singletons despite the initial rate increase. BMC Evol. Biol. 4: 22.
-
(2004)
BMC Evol. Biol
, vol.4
, pp. 22
-
-
Jordan, I.K.1
Wolf, Y.I.2
Koonin, E.V.3
-
36
-
-
77649246145
-
Histone modification levels are predictive for gene expression
-
Karlić, R., Chung, H.R., Lasserre, J., Vlahovicek, K., and Vingron, M. (2010). Histone modification levels are predictive for gene expression. Proc. Natl. Acad. Sci. USA 107: 2926-2931.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 2926-2931
-
-
Karlić, R.1
Chung, H.R.2
Lasserre, J.3
Vlahovicek, K.4
Vingron, M.5
-
37
-
-
78650668282
-
Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome
-
Kim, M.Y., et al. (2010). Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome. Proc. Natl. Acad. Sci. USA 107: 22032-22037.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 22032-22037
-
-
Kim, M.Y.1
-
38
-
-
0014421064
-
Evolutionary rate at the molecular level
-
Kimura, M. (1968). Evolutionary rate at the molecular level. Nature 217: 624-626.
-
(1968)
Nature
, vol.217
, pp. 624-626
-
-
Kimura, M.1
-
39
-
-
0345107239
-
Selection in the evolution of gene duplications
-
research0008.1-research0008.9
-
Kondrashov, F.A., Rogozin, I.B., Wolf, Y.I., and Koonin, E.V. (2002). Selection in the evolution of gene duplications. Genome Biol. 3: research0008.1-research0008.9.
-
(2002)
Genome Biol
, vol.3
-
-
Kondrashov, F.A.1
Rogozin, I.B.2
Wolf, Y.I.3
Koonin, E.V.4
-
40
-
-
69649109364
-
Circos: An information aesthetic for comparative genomics
-
Krzywinski, M., Schein, J., Birol, I., Connors, J., Gascoyne, R., Horsman, D., Jones, S.J., and Marra, M.A. (2009). Circos: An information aesthetic for comparative genomics. Genome Res. 19: 1639-1645.
-
(2009)
Genome Res
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
Jones, S.J.7
Marra, M.A.8
-
41
-
-
78649479141
-
Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection
-
Lam, H.M., et al. (2010). Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nat. Genet. 42: 1053-1059.
-
(2010)
Nat. Genet
, vol.42
, pp. 1053-1059
-
-
Lam, H.M.1
-
42
-
-
0036640951
-
Human SNP variability and mutation rate are higher in regions of high recombination
-
Lercher, M.J., and Hurst, L.D. (2002). Human SNP variability and mutation rate are higher in regions of high recombination. Trends Genet. 18: 337-340.
-
(2002)
Trends Genet
, vol.18
, pp. 337-340
-
-
Lercher, M.J.1
Hurst, L.D.2
-
43
-
-
77954249340
-
An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants
-
Libault, M., Farmer, A., Joshi, T., Takahashi, K., Langley, R.J., Franklin, L.D., He, J., Xu, D., May, G., and Stacey, G. (2010). An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants. Plant J. 63: 86-99.
-
(2010)
Plant J
, vol.63
, pp. 86-99
-
-
Libault, M.1
Farmer, A.2
Joshi, T.3
Takahashi, K.4
Langley, R.J.5
Franklin, L.D.6
He, J.7
Xu, D.8
May, G.9
Stacey, G.10
-
44
-
-
77957764187
-
Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris
-
Lin, J.Y., Stupar, R.M., Hans, C., Hyten, D.L., and Jackson, S.A. (2010). Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris. Plant Cell 22: 2545-2561.
-
(2010)
Plant Cell
, vol.22
, pp. 2545-2561
-
-
Lin, J.Y.1
Stupar, R.M.2
Hans, C.3
Hyten, D.L.4
Jackson, S.A.5
-
45
-
-
42749087226
-
Highly integrated singlebase resolution maps of the epigenome in Arabidopsis
-
Lister, R., O'Malley, R.C., Tonti-Filippini, J., Gregory, B.D., Berry, C.C., Millar, A.H., and Ecker, J.R. (2008). Highly integrated singlebase resolution maps of the epigenome in Arabidopsis. Cell 133: 523-536.
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
Gregory, B.D.4
Berry, C.C.5
Millar, A.H.6
Ecker, J.R.7
-
46
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch, M., and Conery, J.S. (2000). The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
47
-
-
0345306751
-
The origins of genome complexity
-
Lynch, M., and Conery, J.S. (2003). The origins of genome complexity. Science 302: 1401-1404.
-
(2003)
Science
, vol.302
, pp. 1401-1404
-
-
Lynch, M.1
Conery, J.S.2
-
48
-
-
0033972072
-
The probability of duplicate gene preservation by subfunctionalization
-
Lynch, M., and Force, A. (2000). The probability of duplicate gene preservation by subfunctionalization. Genetics 154: 459-473.
-
(2000)
Genetics
, vol.154
, pp. 459-473
-
-
Lynch, M.1
Force, A.2
-
49
-
-
17244368487
-
Modeling gene and genome duplications in eukaryotes
-
Maere, S., De Bodt, S., Raes, J., Casneuf, T., Van Montagu, M., Kuiper, M., and Van de Peer, Y. (2005). Modeling gene and genome duplications in eukaryotes. Proc. Natl. Acad. Sci. USA 102: 5454-5459.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 5454-5459
-
-
Maere, S.1
de Bodt, S.2
Raes, J.3
Casneuf, T.4
van Montagu, M.5
Kuiper, M.6
van de Peer, Y.7
-
51
-
-
0034500239
-
Polyploid incidence and evolution
-
Otto, S.P., and Whitton, J. (2000). Polyploid incidence and evolution. Annu. Rev. Genet. 34: 401-437.
-
(2000)
Annu. Rev. Genet
, vol.34
, pp. 401-437
-
-
Otto, S.P.1
Whitton, J.2
-
52
-
-
34548595490
-
MareyMap: An R-based tool with graphical interface for estimating recombination rates
-
Rezvoy, C., Charif, D., Guéguen, L., and Marais, G.A. (2007). MareyMap: An R-based tool with graphical interface for estimating recombination rates. Bioinformatics 23: 2188-2189.
-
(2007)
Bioinformatics
, vol.23
, pp. 2188-2189
-
-
Rezvoy, C.1
Charif, D.2
Guéguen, L.3
Marais, G.A.4
-
53
-
-
2442712340
-
Mining EST databases to resolve evolutionary events in major crop species
-
Schlueter, J.A., Dixon, P., Granger, C., Grant, D., Clark, L., Doyle, J.J., and Shoemaker, R.C. (2004). Mining EST databases to resolve evolutionary events in major crop species. Genome 47: 868-876.
-
(2004)
Genome
, vol.47
, pp. 868-876
-
-
Schlueter, J.A.1
Dixon, P.2
Granger, C.3
Grant, D.4
Clark, L.5
Doyle, J.J.6
Shoemaker, R.C.7
-
54
-
-
33750446284
-
Sequence conservation of homeologous BACs and expression of homeologous genes in soybean (Glycine max L Merr)
-
Schlueter, J.A., Scheffler, B.E., Schlueter, S.D., and Shoemaker, R.C. (2006). Sequence conservation of homeologous BACs and expression of homeologous genes in soybean (Glycine max L Merr). Genetics 174: 1017-1028.
-
(2006)
Genetics
, vol.174
, pp. 1017-1028
-
-
Schlueter, J.A.1
Scheffler, B.E.2
Schlueter, S.D.3
Shoemaker, R.C.4
-
55
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
Schmutz, J., et al. (2010). Genome sequence of the palaeopolyploid soybean. Nature 463: 178-183.
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
-
56
-
-
79952744855
-
Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
-
Schnable, J.C., Springer, N.M., and Freeling, M. (2011). Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc. Natl. Acad. Sci. USA 108: 4069-4074.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 4069-4074
-
-
Schnable, J.C.1
Springer, N.M.2
Freeling, M.3
-
57
-
-
13944266797
-
The dual nature of homologous recombination in plants
-
Schuermann, D., Molinier, J., Fritsch, O., and Hohn, B. (2005). The dual nature of homologous recombination in plants. Trends Genet. 21: 172-181.
-
(2005)
Trends Genet
, vol.21
, pp. 172-181
-
-
Schuermann, D.1
Molinier, J.2
Fritsch, O.3
Hohn, B.4
-
58
-
-
36549038087
-
Consequences of genome duplication
-
Sémon, M., and Wolfe, K.H. (2007). Consequences of genome duplication. Curr. Opin. Genet. Dev. 17: 505-512.
-
(2007)
Curr. Opin. Genet. Dev
, vol.17
, pp. 505-512
-
-
Sémon, M.1
Wolfe, K.H.2
-
59
-
-
4444363053
-
Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome
-
Seoighe, C., and Gehring, C. (2004). Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome. Trends Genet. 20: 461-464.
-
(2004)
Trends Genet
, vol.20
, pp. 461-464
-
-
Seoighe, C.1
Gehring, C.2
-
60
-
-
80054996709
-
Changes in twelve homoeologous genomic regions in soybean following three rounds of polyploidy
-
Severin, A.J., Cannon, S.B., Graham, M.M., Grant, D., and Shoemaker, R.C. (2011). Changes in twelve homoeologous genomic regions in soybean following three rounds of polyploidy. Plant Cell 23: 3129-3136.
-
(2011)
Plant Cell
, vol.23
, pp. 3129-3136
-
-
Severin, A.J.1
Cannon, S.B.2
Graham, M.M.3
Grant, D.4
Shoemaker, R.C.5
-
61
-
-
0033198094
-
Polyploidy: Recurrent formation and genome evolution
-
Soltis, D.E., and Soltis, P.S. (1999). Polyploidy: Recurrent formation and genome evolution. Trends Ecol. Evol. (Amst.) 14: 348-352.
-
(1999)
Trends Ecol. Evol. (Amst.)
, vol.14
, pp. 348-352
-
-
Soltis, D.E.1
Soltis, P.S.2
-
62
-
-
67651052323
-
The role of hybridization in plant speciation
-
Soltis, P.S., and Soltis, D.E. (2009). The role of hybridization in plant speciation. Annu. Rev. Plant Biol. 60: 561-588.
-
(2009)
Annu. Rev. Plant Biol
, vol.60
, pp. 561-588
-
-
Soltis, P.S.1
Soltis, D.E.2
-
63
-
-
33749416027
-
The influence of recombination on human genetic diversity
-
Spencer, C.C., Deloukas, P., Hunt, S., Mullikin, J., Myers, S., Silverman, B., Donnelly, P., Bentley, D., and McVean, G. (2006). The influence of recombination on human genetic diversity. PLoS Genet. 2: e148.
-
(2006)
PLoS Genet
, vol.2
-
-
Spencer, C.C.1
Deloukas, P.2
Hunt, S.3
Mullikin, J.4
Myers, S.5
Silverman, B.6
Donnelly, P.7
Bentley, D.8
McVean, G.9
-
64
-
-
78751614080
-
Histone H3K4 methylation keeps centromeres open for business
-
Stimpson, K.M., and Sullivan, B.A. (2011). Histone H3K4 methylation keeps centromeres open for business. EMBO J. 30: 233-234.
-
(2011)
EMBO J
, vol.30
, pp. 233-234
-
-
Stimpson, K.M.1
Sullivan, B.A.2
-
65
-
-
5144234363
-
Close split of sorghum and maize genome progenitors
-
Swigonová, Z., Lai, J., Ma, J., Ramakrishna, W., Llaca, V., Bennetzen, J.L., and Messing, J. (2004). Close split of sorghum and maize genome progenitors. Genome Res. 14: 1916-1923.
-
(2004)
Genome Res
, vol.14
, pp. 1916-1923
-
-
Swigonová, Z.1
Lai, J.2
Ma, J.3
Ramakrishna, W.4
Llaca, V.5
Bennetzen, J.L.6
Messing, J.7
-
66
-
-
33745617700
-
Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
-
Thomas, B.C., Pedersen, B., and Freeling, M. (2006). Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes. Genome Res. 16: 934-946.
-
(2006)
Genome Res
, vol.16
, pp. 934-946
-
-
Thomas, B.C.1
Pedersen, B.2
Freeling, M.3
-
67
-
-
73249153383
-
Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?
-
Tian, Z., Rizzon, C., Du, J., Zhu, L., Bennetzen, J.L., Jackson, S.A., Gaut, B.S., and Ma, J. (2009). Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons? Genome Res. 19: 2221-2230.
-
(2009)
Genome Res
, vol.19
, pp. 2221-2230
-
-
Tian, Z.1
Rizzon, C.2
Du, J.3
Zhu, L.4
Bennetzen, J.L.5
Jackson, S.A.6
Gaut, B.S.7
Ma, J.8
-
68
-
-
48949115115
-
Cellular reactions to gene dosage imbalance: Genomic, transcriptomic and proteomic effects
-
Veitia, R.A., Bottani, S., and Birchler, J.A. (2008). Cellular reactions to gene dosage imbalance: Genomic, transcriptomic and proteomic effects. Trends Genet. 24: 390-397.
-
(2008)
Trends Genet
, vol.24
, pp. 390-397
-
-
Veitia, R.A.1
Bottani, S.2
Birchler, J.A.3
-
69
-
-
0028893838
-
How often do duplicated genes evolve new functions?
-
Walsh, J.B. (1995). How often do duplicated genes evolve new functions? Genetics 139: 421-428.
-
(1995)
Genetics
, vol.139
, pp. 421-428
-
-
Walsh, J.B.1
-
70
-
-
77649328902
-
SoyDB: A knowledge database of soybean transcription factors
-
Wang, Z., Libault, M., Joshi, T., Valliyodan, B., Nguyen, H.T., Xu, D., Stacey, G., and Cheng, J. (2010). SoyDB: A knowledge database of soybean transcription factors. BMC Plant Biol. 10: 14.
-
(2010)
BMC Plant Biol
, vol.10
, pp. 14
-
-
Wang, Z.1
Libault, M.2
Joshi, T.3
Valliyodan, B.4
Nguyen, H.T.5
Xu, D.6
Stacey, G.7
Cheng, J.8
-
71
-
-
18744398427
-
Centromeric heterochromatin comes clean with DNA methylation
-
Warburton, P.E. (2004). Centromeric heterochromatin comes clean with DNA methylation. Nature Methods 1: 14-15.
-
(2004)
Nature Methods
, vol.1
, pp. 14-15
-
-
Warburton, P.E.1
-
72
-
-
0033974956
-
Genome evolution in polyploids
-
Wendel, J.F. (2000). Genome evolution in polyploids. Plant Mol. Biol. 42: 225-249.
-
(2000)
Plant Mol. Biol
, vol.42
, pp. 225-249
-
-
Wendel, J.F.1
-
73
-
-
0035344021
-
Yesterday's polyploids and the mystery of diploidization
-
Wolfe, K.H. (2001). Yesterday's polyploids and the mystery of diploidization. Nat. Rev. Genet. 2: 333-341.
-
(2001)
Nat. Rev. Genet
, vol.2
, pp. 333-341
-
-
Wolfe, K.H.1
-
74
-
-
0037370306
-
Molecular evolution meets the genomics revolution
-
Wolfe, K.H., and Li, W.H. (2003). Molecular evolution meets the genomics revolution. Nat. Genet. 33(Suppl): 255-265.
-
(2003)
Nat. Genet
, vol.33
, Issue.SUPPL.
, pp. 255-265
-
-
Wolfe, K.H.1
Li, W.H.2
-
75
-
-
77954741256
-
Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs
-
Woodhouse, M.R., Schnable, J.C., Pedersen, B.S., Lyons, E., Lisch, D., Subramaniam, S., and Freeling, M. (2010). Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs. PLoS Biol. 8: e1000409.
-
(2010)
PLoS Biol
, vol.8
-
-
Woodhouse, M.R.1
Schnable, J.C.2
Pedersen, B.S.3
Lyons, E.4
Lisch, D.5
Subramaniam, S.6
Freeling, M.7
-
76
-
-
0038708556
-
Rate of protein evolution versus fitness effect of gene deletion
-
Yang, J., Gu, Z., and Li, W.H. (2003). Rate of protein evolution versus fitness effect of gene deletion. Mol. Biol. Evol. 20: 772-774.
-
(2003)
Mol. Biol. Evol
, vol.20
, pp. 772-774
-
-
Yang, J.1
Gu, Z.2
Li, W.H.3
-
77
-
-
79961064486
-
Factors that contribute to variation in evolutionary rate among Arabidopsis genes
-
Yang, L., and Gaut, B.S. (2011). Factors that contribute to variation in evolutionary rate among Arabidopsis genes. Mol. Biol. Evol. 28: 2359-2369.
-
(2011)
Mol. Biol. Evol
, vol.28
, pp. 2359-2369
-
-
Yang, L.1
Gaut, B.S.2
-
78
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang, Z. (2007). PAML 4: Phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24: 1586-1591.
-
(2007)
Mol. Biol. Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
79
-
-
66949124248
-
Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays
-
Zeller, G., Henz, S.R., Widmer, C.K., Sachsenberg, T., Rätsch, G., Weigel, D., and Laubinger, S. (2009). Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays. Plant J. 58: 1068-1082.
-
(2009)
Plant J
, vol.58
, pp. 1068-1082
-
-
Zeller, G.1
Henz, S.R.2
Widmer, C.K.3
Sachsenberg, T.4
Rätsch, G.5
Weigel, D.6
Laubinger, S.7
-
80
-
-
77951871117
-
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
-
Zhang, G., et al. (2010). Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Res. 20: 646-654.
-
(2010)
Genome Res
, vol.20
, pp. 646-654
-
-
Zhang, G.1
|