Progress in understanding the role of lipids in membrane protein folding

Biochimica et Biophysica Acta - Biomembranes

Volumn 1818, Issue 4, 2012, Pages 951-956

  Mitchell, Drake C ^a  

^a PORTLAND STATE UNIVERSITY   (United States)

Author keywords

Curvature stress; Phosphatidylethanolamine; Phospholipid

Indexed keywords

4 AMINOBUTYRIC ACID; BACTERIORHODOPSIN; DIACYLGLYCEROL KINASE; LIPID; LIPOSOME; MEMBRANE PROTEIN; OUTER MEMBRANE PROTEIN A; PHOSPHATIDYLETHANOLAMINE; PHOSPHOLIPID;

ALPHA HELIX; AMINO ACID SEQUENCE; ESCHERICHIA COLI; HYDROPHOBICITY; LIPID BILAYER; LIPID COMPOSITION; MEMBRANE VESICLE; NONHUMAN; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN MODIFICATION; PROTEIN STRUCTURE; REVIEW; THERMODYNAMICS;

LIPIDS; MEMBRANE PROTEINS; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY;

EID: 84857654934     PISSN: 00052736     EISSN: 18792642     Source Type: Journal    
DOI: 10.1016/j.bbamem.2011.12.029     Document Type: Review

References (48)

1. E. Wallin, and G. von Heijne Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms Protein Sci. 7 1998 1029 1038
2. A.M. Stanley, and K.G. Fleming Process of folding proteins into membranes: challenges and progress Arch. Biochem. Biophys. 469 2008 46 66
3. M. Yorek Biological Distribution 1993 Dekker New York
4. S. Wilkinson Gram-Negative Bacteria 1988 Academic London
5. S. Morein, A.S. Andersson, L. Rilfors, and G. Lindblom Wild-type Escherichia coli cells regulate the membrane lipid composition in a "window" between gel and non-lamellar structures J. Biol. Chem. 271 1996 6801 6809
6. J.R. Hazel, and E.E. Williams The role of alterations in membrane lipid-composition in enabling physiological adaptation of organisms to their physical-environment Prog. Lipid Res. 29 1990 167 227
7. A.S. Ryan, J.D. Astwood, S. Gautier, C.N. Kuratko, E.B. Nelson, and N. Salem Effects of long-chain polyunsaturated fatty acid supplementation on neurodevelopment in childhood: a review of human studies Prostaglandins Leukot. Essent. Fatty Acids 82 2010 305 314
8. J.T. Brenna, N. Salem, A.J. Sinclair, and S.C. Cunnane Issfal, alpha-Linolenic acid supplementation and conversion to n-3 long-chain polyunsaturated fatty acids in humans Prostaglandins Leukot. Essent. Fatty Acids 80 2009 85 91
9. P.J. Booth Same in the membrane: designing systems to modulate membrane proteins Curr. Opin. Struct. Biol. 15 2005 435 440
10. P.J. Booth Unravelling the folding of bacteriorhodopsin Biochim. Biophys. Acad. Acta-Bioenerg. 1460 2000 4 14
11. K.S. Huang, H. Bayley, M.J. Liao, E. London, and H.G. Khorana Refolding of an integral membrane-protein - denaturation, renaturation, and reconstitution of intact bacteriorhodopsin and 2 proteolytic fragments J. Biol. Chem. 256 1981 3802 3809
12. E. London, and H.G. Khorana Denaturation and renaturation of bacteriorhodopsin in detergents and lipid-detergent mixtures J. Biol. Chem. 257 1982 7003 7011
13. A.R. Curran, R.H. Templer, and P.J. Booth Modulation of folding and assembly of the membrane protein bacteriorhodopsin by intermolecular forces within the lipid bilayer Biochemistry 38 1999 9328 9336
14. R.S. Cantor Lipid composition and the lateral pressure profile in bilayers Biophys. J. 76 1999 2625 2639
15. A.R. Curran, P.J. Booth, and R.H. Templer Protein folding in biological membranes Biophys. J. 74 1998 A310-A310
16. P.J. Booth, and P. Curnow Folding scene investigation: membrane proteins Curr. Opin. Struct. Biol. 19 2009 8 13
17. S.J. Allen, A.R. Curran, R.H. Templer, W. Meijberg, and P.J. Booth Controlling the folding efficiency of an integral membrane protein J. Mol. Biol. 342 2004 1293 1304
18. J.K. Nagy, W.L. Lonzer, and C.R. Sanders Kinetic study of folding and misfolding of diacylglycerol kinase in model membranes Biochemistry 40 2001 8971 8980
19. A.M. Seddon, M. Lorch, O. Ces, R.H. Templer, F. Macrae, and P.J. Booth Phosphatidylglycerol lipids enhance folding of an alpha helical membrane protein J. Mol. Biol. 380 2008 548 556
20. D. Miller, K. Charalambous, D. Rotem, S. Schuldiner, P. Curnow, and P.J. Booth In vitro unfolding and refolding of the small multidrug transporter EmrE J. Mol. Biol. 393 2009 815 832
21. S. Schuldiner, M. Lebendiker, and H. Yerushalmi EmrE, the smallest ion-coupled transporter, provides a unique paradigm for structure-function studies J. Exp. Biol. 200 1997 335 341
22. H.E. Findlay, N.G. Rutherford, P.J.F. Henderson, and P.J. Booth Unfolding free energy of a two-domain transmembrane sugar transport protein Proc. Natl. Acad. Sci. U. S. A. 107 2010 18451 18456
23. H.D. Hong, and L.K. Tamm Elastic coupling of integral membrane protein stability to lipid bilayer forces Proc. Natl. Acad. Sci. U. S. A. 101 2004 4065 4070
24. S. Galdiero, M. Galdiero, and C. Pedone beta-Barrel membrane bacterial proteins: structure, function, assembly and interaction with lipids Curr. Protein Pept. Sci. 8 2007 63 82
25. J.H. Kleinschmidt, and L.K. Tamm Secondary and tertiary structure formation of the beta-barrel membrane protein OmpA is synchronized and depends on membrane thickness J. Mol. Biol. 324 2002 319 330
26. H. Hong, and L.K. Tamm Elastic coupling of membrane protein stability to lipid bilayer forces Biophys. J. 86 2004 558A-558A
27. S.M. Gruner Intrinsic curvature hypothesis for biomembrane lipid-composition - a role for nonbilayer lipids Proc. Natl. Acad. Sci. U. S. A. 82 1985 3665 3669
28. M.W. Tate, and S.M. Gruner Temperature-dependence of the structural dimensions of the inverted hexagonal (HII) phase of phosphatidylethanolamine- containing membranes Biochemistry 28 1989 4245 4253
29. B.A. Lewis, and D.M. Engelman Lipid bilayer thickness varies linearly with acyl chain-length in fluid phosphatidylcholine vesicles J. Mol. Biol. 166 1983 211 217
30. A. Pautsch, and G.E. Schulz High-resolution structure of the OmpA membrane domain J. Mol. Biol. 298 2000 273 282
31. A.H. Dewald, J.C. Hodges, and L. Columbus Physical determinants of beta-barrel membrane protein folding in lipid vesicles Biophys. J. 100 2011 2131 2140
32. N.K. Burgess, T.P. Dao, A.M. Stanley, and K.G. Fleming beta-Barrel proteins that reside in the Escherichia coli outer membrane in vivo demonstrate varied folding behavior in vitro J. Biol. Chem. 283 2008 26748 26758
33. A.S. Ladokhin, S. Jayasinghe, and S.H. White How to measure and analyze tryptophan fluorescence in membranes properly, and why bother? Anal. Biochem. 285 2000 235 245
34. D. Marsh, B. Shanmugavadivu, and J.H. Kleinschmidt Membrane elastic fluctuations and the insertion and tilt of beta-barrel proteins Biophys. J. 91 2006 227 232
35. M. Bogdanov, and W. Dowhan Phospholipid-assisted protein folding: phosphatidylethanolamine is required at a late step of the conformational maturation of the polytopic membrane protein lactose permease EMBO J. 17 1998 5255 5264
36. M. Bogdanov, P.N. Heacock, and W. Dowhan A polytopic membrane protein displays a reversible topology dependent on membrane lipid composition EMBO J. 21 2002 2107 2116
37. W. Zhang, M. Bogdanov, J. Pi, A.J. Pittard, and W. Dowhan Reversible topological organization within a polytopic membrane protein is governed by a change in membrane phospholipid composition J. Biol. Chem. 278 2003 50128 50135
38. W. Zhang, H.A. Campbell, S.C. King, and W. Dowhan Phospholipids as determinants of membrane protein topology - phosphatidylethanolamine is required for the proper topological organization of the gamma-aminobutyric acid permease (GabP) of Escherichia coli J. Biol. Chem. 280 2005 26032 26038
39. C.R.H. Raetz, and W. Dowhan Biosynthesis and function of phospholipids in Escherichia-coli J. Biol. Chem. 265 1990 1235 1238
40. C.C. Chen, and T.H. Wilson The phospholipid requirement for activity of the lactose carrier of Escherichia-coli J. Biol. Chem. 259 1984 150 158
41. M. Bogdanov, and W. Dowhan Phosphatidylethanolamine is required for in-vivo function of the membrane-associated lactose permease of Escherichia-coli J. Biol. Chem. 270 1995 732 739
42. M. Bogdanov, M. Umeda, and W. Dowhan Phospholipid-assisted refolding of an integral membrane protein - minimum structural features for phosphatidylethanolamine to act as a molecular chaperone J. Biol. Chem. 274 1999 12339 12345
43. M. Bogdanov, J.Z. Sun, H.R. Kaback, and W. Dowhan A phospholipid acts as a chaperone in assembly of a membrane transport protein J. Biol. Chem. 271 1996 11615 11618
44. P.R. Cullis, and B. Dekruijff Polymorphic phase behavior of phosphatidylethanolamines of natural and synthetic origin - P-31 NMR-study Biochim. Biophys. Acta 513 1978 31 42
45. S.B. Farren, and P.R. Cullis Polymorphism of phosphatidylglycerol- phosphatidylethanolamine model membrane systems - a P-31 NMR-study Biochem. Biophys. Res. Commun. 97 1980 182 191
46. M. Bogdanov, J. Xie, P. Heacock, and W. Dowhan To flip or not to flip: lipid-protein charge interactions are a determinant of final membrane protein topology J. Cell Biol. 182 2008 925 935
47. W. Dowhan, and M. Bogdanov Lipid-dependent membrane protein topogenesis Annu. Rev. Biochem. 78 2009 515 540
48. J. Abramson, I. Smirnova, V. Kasho, G. Verner, H.R. Kaback, and S. Iwata Structure and mechanism of the lactose permease of Escherichia coli Science 301 2003 610 615