Reconstructing individual food and growth histories from biogenic carbonates

Marine Ecology Progress Series

Volumn 447, Issue , 2012, Pages 151-164

  Pecquerie, Laure ^a,b   Fablet, Ronan ^c,d   De Pontual, Hélène ^e   Bonhommeau, Sylvain ^f   Alunno Bruscia, Marianne ^e   Petitgas, Pierre ^e   Kooijman, Sebastiaan A L M ^g  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^c LAB STICC   (France)

^d UNIVERSITÉ EUROPÉENNE DE BRETAGNE   (France)

^e IFREMER   (France)

^f UNIVERSITÉ MONTPELLIER 2   (France)

^g VU UNIVERSITY AMSTERDAM   (Netherlands)

Author keywords

Bioenergetic model; Calcification; Dynamic Energy Budget theory; Food reconstruction; Metabolism; Otolith

Indexed keywords

AQUATIC ORGANISM; BIOENERGETICS; BIOGENIC MATERIAL; CALCIFICATION; CARBONATE; CLUPEOID; ENERGY BUDGET; ENVIRONMENTAL CONDITIONS; FEEDING BEHAVIOR; FOOD; GROWTH RATE; METABOLISM; OPTICAL PROPERTY; OTOLITH; POPULATION DYNAMICS; RECONSTRUCTION; TEMPORAL VARIATION;

ATLANTIC OCEAN; BAY OF BISCAY;

ANIMALIA; ANTHOZOA; BIVALVIA; ENGRAULIDAE; ENGRAULIS ENCRASICOLUS;

EID: 84857344993     PISSN: 01718630     EISSN: None     Source Type: Journal    
DOI: 10.3354/meps09492     Document Type: Article

References (64)

1. Al-Horani FA, Al-Rousan SA, Manasrah RS, Rasheed MY (2005) Coral calcification: use of radioactive isotopes and metabolic inhibitors to study the interactions with photosynthesis and respiration. Chem Ecol 21: 325-335
2. Allain G, Petitgas P, Grellier P, Lazure P (2003) The selection process from larval to juvenile stages of anchovy (Engraulis encrasicolus) in the Bay of Biscay investigated by Lagrangian simulations and comparative otolith growth. Fish Oceanogr 12: 407-418 (Pubitemid 37274144)
3. Alunno-Bruscia M, Bourget E, Frechette M (2001) Shell allometry and length-mass-density relationship for Mytilus edulis in an experimental food-regulated situation. Mar Ecol Prog Ser 219: 177-188 (Pubitemid 32956345)
4. Bodiguel X, Maury O, Mellon-Duval C, Roupsard F, Le Guel-lec AM, Loizeau V (2009) A dynamic and mechanistic model of PCB bioaccumulation in the European hake (Merluccius merluccius). J Sea Res 62: 124-134
5. Burton EA, Walter LM (1987) Relative precipitation rates of aragonite and Mg calcite from seawater: temperature or carbonate ion control? Geology 15: 111-114
6. Campana SE (1990) How reliable are growth back-calculation based on otoliths? Can J Fish Aquat Sci 47: 2219-2227
7. Campana SE (1999) Chemistry and composition of fish otoliths: pathways, mechanisms and applications. Mar Ecol Prog Ser 188: 263-297
8. Carlström D (1963) A crystallographic study of vertebrate otoliths. Biol Bull 125: 441-463
9. Cermeño P, Uriarte A, de Murguia AM, Morales-Nin B (2003) Validation of daily increment formation in otolith of juvenile and adult European anchovy. J Fish Biol 62: 679-691 (Pubitemid 38600476)
10. Cerrato RM (2000) What fish biologists should know about bivalve shells. Fish Res 46: 39-49 (Pubitemid 30329486)
11. 2 enhances oto lith growth in young fish. Science 324: 1683
12. Cohen AL, McCorkle DC, de Putron S, Gaetani GA, Rose KA (2009) Morphological and compositional changes in the skeletons of new coral recruits reared in acidified sea-water: insights into the biomineralization response to ocean acidification. Geochem Geophys Geosyst 10: Q07005, doi:10.1029/ 2009GC002411
13. Comeau S, Gorsky G, Jeffree R, Teyssie JL, Gattuso JP (2009) Impact of ocean acidification on a key Arctic pelagic mollusc (Limacina helicina). Biogeosciences 6: 1877-1882
14. Dannevig EH (1956) Chemical composition of the zones in cod otoliths. J Cons Int Explor Mer 21: 156-159
15. de PontualH, Groison AL, Pineiro C, Bertignac M (2006) Evidence of underestimation of European hake growth in the Bay of Biscay, and its relationship with bias in the agreed method of age estimation. ICES J Mar Sci 63: 1674-1681 (Pubitemid 44693385)
16. Elsdon TS, Ayvazian S, McMahon KW, Thorrold SR (2010) Experimental evaluation of stable isotope fractionation in fish muscle and otoliths. Mar Ecol Prog Ser 408: 195-205
17. Fablet R, Chessel A, Carbini S, Benzinou A, de Pontual H (2009) Reconstructing individual shape histories of fish otoliths: a new image-based tool for otolith growth analysis and modeling. Fish Res 96: 148-159
18. Hoff GR, Fuiman LA (1993) Morphometry and composition of red drum otoliths: changes associated with temperature, somatic growth rate, and age. Comp Biochem Phys-iol A 106: 209-219 (Pubitemid 23300451)
19. Hoie H, Folkvord A, Mosegaard H, Li L, Clausen LAW, Nor-berg B, Geffen AJ (2008) Restricted fish feeding reduces cod otolith opacity. J Appl Ichthyology 24: 138-143 (Pubitemid 351384593)
20. Hüssy K, Mosegaard H (2004) Atlantic cod (Gadus morhua) growth and otolith accretion characteristics modelled in a bioenergetics context. Can J Fish Aquat Sci 61: 1021-1031 (Pubitemid 39384645)
21. Hüssy K, Mosegaard H, Jessen F (2004) Effect of age and temperature on amino acid composition and the content of different protein types of juvenile Atlantic cod (Gadus morhua) otoliths. Can J Fish Aquat Sci 61: 1012-1020 (Pubitemid 39384644)
22. Kooijman SALM (2010) Dynamic energy and mass budgets in biological systems, 3rd edn. Cambridge University Press, Cambridge
23. Kooijman SALM, Sousa T, Pecquerie L, van der Meer J, Jager T (2008) From food-dependent statistics to metabolic parameters, a practical guide to the use of dynamic energy budget theory. Biol Rev Camb Philos Soc 83: 533-552
24. Lee TW, Kim GC (2000) Microstructural growth in otoliths of black rockfish, Sebastes schlegeli, from prenatal larval to early juvenile stages. Ichthyol Res 47: 335-341
25. Lewis DE, Cerrato RM (1997) Growth uncoupling and the relationship between shell growth and metabolism in the soft shell clam Mya arenaria. Mar Ecol Prog Ser 158: 177-189 (Pubitemid 27518790)
26. Li L, Hoie H, Geffen AJ, Heegaard E, Skadal J, Folkvord A (2008) Back-calculation of previous fish size using individually tagged and marked Atlantic cod (Gadus morhua). Can J Fish Aquat Sci 65: 2496-2508
27. Lika K, Freitas V, van der Veer HW, van der Meer J, van der Wijsman JWM, Pecquerie L, Kearney MR, Kooijman SALM (2011) The 'covariation method' for estimating the parameters of the standard Dynamic Energy Budget model. I: philosophy and approach. J Sea Res 66: 270-277
28. Lychakov DV, Rebane YT (2005) Fish otolith mass assyme-try: morphometric and influence on acoustic functionality. Hear Res 201: 55-69 (Pubitemid 40255545)
29. McDonald MR, McClintock JB, Amsler CD, Rittschof D, Angus RA, Orihuela B, Lutostanski K (2009) Effects of ocean acidification over the life history of the barnacle Amphi-balanus amphitrite. Mar Ecol Prog Ser 385: 179-187
30. Mosegaard H, Titus R (1987) Daily growth rates of otolith yolk sac fry of two salmonds at five different temperatures. In: Kullander SO, Fernholm N (eds) Proc 5th Congr European Ichthyologists. Swedish Museum of Natural History, Stockholm, p 221-227
31. Motos L, Uriarte A, Valencia V (1996) The spawning environment of the Bay of Biscay anchovy (Engraulis encrasi-colus L.). Sci Mar 60: 117-140 (Pubitemid 126653294)
32. Mugiya Y (1965) Calcification of fish and shellfish. X. Study on paper electrophoretic patterns of the acid muco-polysaccharides and Pas-positive materials in the otolith fluid of some fish. Bull Jpn Soc Sci Fish 32: 653-661
33. Mugiya Y, Uchimura T (1989) Otolith resorption induced by anaerobic stress in the goldfish Carassius auratus. J Fish Biol 35: 813-818
34. Muller EB, Kooijman SALM, Edmunds PJ, Doyle FJ, Nisbet RM (2009) Dynamic energy budgets in syntrophic symbiotic relationships between heterotrophic hosts and pho-toautotrophic symbionts. J Theor Biol 259: 44-57
35. Munday PL, Gagliano M, Donelson JM, Dixson DL, Thorrold SR (2011) Ocean acidification does not affect the early life history development of a tropical marine fish. Mar Ecol Prog Ser 423: 211-221
36. Neat FC, Wright PJ, Fryer RJ (2008) Temperature effects on otolith pattern formation in Atlantic cod Gadus morhua. J Fish Biol 73: 2527-2541
37. Neilson JD, Geen GH (1985) Effects of feeding regimes and diel temperature cycles on otolith increment formation in juvenile Chinook salmon, Oncorhynchus tshawytscha. Fish Bull 83: 91-101 (Pubitemid 17248862)
38. Nisbet RM, Muller EB, Lika K, Kooijman SALM (2000) From molecules to ecosystems through dynamic energy budget models. J Anim Ecol 69: 913-926 (Pubitemid 32111260)
39. Nisbet RM, Jusup M, Klanjscek T, Pecquerie L (in press) Integrating dynamic energy budget (DEB) theory with traditional bioenergetic models. J Exp Biol
40. Otterlei E, Folkvord A, Nyhammer G (2002) Temperature dependent otolith growth of larval and early juvenile Atlantic cod (Gadus morhua). ICES J Mar Sci 59: 851-860 (Pubitemid 35240983)
41. Oyadomari JK, Auer NN (2007) Influence of rearing temperature and feeding regime on otolith increment deposition in larval ciscoes. Trans Am Fish Soc 136: 766-777 (Pubitemid 46897083)
42. Panfili J, Troadec H, de Pontual H, Wright PJ (eds).(2002) Manual of fish sclerochronology. Ifremer-IRD coedition, Brest, France
43. Pecquerie L (2008) Bioenergetic modelling of the growth, development and reproduction of a small pelagic fish: the Bay of Biscay anchovy. PhD thesis, Vrije Universiteit, Amsterdam, http://dare.ubvu.vu.nl/handle/1871/11716
44. Pecquerie L, Petitgas P, Kooijman SALM (2009) Modeling fish growth and reproduction in the context of the dynamic energy budget theory to predict environmental impact on anchovy spawning duration. J Sea Res 62: 93-105
45. Petitgas P, Grellier P (2003) Size selective processes for anchovy in Biscay, 2000-2002: recruitment, adult survival and spawning. ICES CM 2003/N: 07, ICES, Tallin
46. Pouvreau S, Bourles Y, Lefebvre S, Gangnery A, Alunno-Bruscia M (2006) Application of a dynamic energy budget model to the Pacific oyster, Crassostrea gigas, reared under various environmental conditions. J Sea Res 56: 156-167 (Pubitemid 44316934)
47. Quinn TM, Crowley TJ, Taylor FW, Henin C, Joannot P, Join Y (1998) A multicentury stable isotope record from a New Caledonia coral: Interannual and decadal sea surface temperature variability in the southwest Pacific since 1657 AD. Paleoceanography 13: 412-426 (Pubitemid 128500743)
48. Rae GA, San Román NA, Spinoglio DE (1999) Age validation and growth of yolked larvae of Patagonotothen tessellata (Richardson, 1845) (Pisces: Nototheniidae) from the rocky littoral of the Beagle Channel, Argentina. Sci Mar 63: 469-476
49. Rhoads DC, Lutz RA (1980) Skeletal growth of aquatic organisms: biological records of environmental change. Plenum Press, New York
50. Rice JA, Crowder LB, Binkowski FP (1985) Evaluating otolith analysis for bloater Coregonus hoyi: do otoliths ring true? Trans Am Fish Soc 114: 532-539
51. Ropert-Coudert Y, Kato A (2006) Are stomach temperature recorders a useful tool for determining feeding activity? Polar Biosci 20: 63-72 (Pubitemid 46773280)
52. Rowell K, Dettman D, Dietz R (2010) Nitrogen isotopes in otoliths reconstruct ancient trophic position. Environ Biol Fishes 89: 415-425
53. Schirripa MJ, Goodyear CP (1997) Simulation of alternative assumptions of fish otolith-somatic growth with a bio-energetics model. Ecol Model 102: 209-223 (Pubitemid 27506476)
54. Schone BR, Fiebig J, Pfeiffer M, Gless R and others (2005) Climate records from a bivalved Methuselah (Arctica islandica, Mollusca; Iceland). Palaeogeogr Palaeoclima-tol Palaeoecol 228: 130-148 (Pubitemid 41586688)
55. Sousa T, Domingos T, Kooijman SALM (2008) From empirical patterns to theory: a formal metabolic theory of life. Philos Trans R Soc Lond B 363: 2453-2464 (Pubitemid 351839871)
56. Tsukamoto K, Nakai I, Tesch WV (1998) Do all freshwater eels migrate? Nature 396: 635-636
57. van der Meer J (2006) An introduction to dynamic energy budget (DEB) models with special emphasis on parameter estimation. J Sea Res 56:85-102
58. van der Veer HW, Kooijman SALM, van der Meer J (2001) Intra-and interspecific comparison of energy flow in North Atlantic flatfish species by means of dynamic energy budgets. J Sea Res 45: 303-320 (Pubitemid 32739460)
59. van der Veer HW, Cardoso JFMF, van der Meer J (2006) The estimation of DEB parameters for various Northeast Atlantic bivalve species. J Sea Res 56: 107-124
60. Wanamaker AD, Heinemeier J, Scourse JD, Richardson CA, Butler PG, Eiriksson J, Knudsen KL (2008) Very long-lived mollusks confirm 17th century AD Tephra-based radiocarbon reservoir ages for North Icelandic shelf waters. Radiocarbon 50: 399-412
61. Watabe N, Tanaka K, Yamada J, Dean JM (1982) Scanning electron microscope observations of the organic matrix in the otolith of the teleost fish Fundulus heteroclitus (Linnaeus) and Tilapia nilotica (Linnaeus). J Exp Mar Biol Ecol 58: 127-134
62. Wright PJ, Fallon-Cousins P, Armstrong JD (2001) The relationship between otolith accretion and resting metabolic rate in juvenile Atlantic salmon during a change in temperature. J Fish Biol 59: 657-666 (Pubitemid 33030514)
63. Wysokinski A (1986) The living marine resources of the Southeast Atlantic. FAO Fish Tech Pap (178) Rev. (1). FAO, Rome
64. Yamamoto T, Ueda H, Higashi S (1998) Correlation among dominance status, metabolic rate and otolith size in masu salmon. J Fish Biol 52: 281-290 (Pubitemid 28104707)