Molecular epidemiology of tuberculosis in rural Matlab, Bangladesh

International Journal of Tuberculosis and Lung Disease

Volumn 16, Issue 3, 2012, Pages 319-326

  Banu, Sayera ^a   Uddin, M K M ^a   Islam, M R ^b   Zaman, K ^a   Ahmed, T ^a   Talukder, A H ^a   Rahman, M T ^a   Rahim, Z ^a   Akter, N ^b   Khatun, R ^a   Brosch, R ^c   Endtz, H P ^a  

^a INTERNATIONAL CENTRE FOR DIARRHOEAL DISEASE RESEARCH   (Bangladesh)

^b UNIVERSITY OF DHAKA   (Bangladesh)

^c INSTITUT PASTEUR   (France)

Author keywords

Bangladesh; Molecular epidemiology; Tuberculosis

Indexed keywords

ETHAMBUTOL; ISONIAZID; RIFAMPICIN; STREPTOMYCIN;

ADOLESCENT; ADULT; AGED; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL LOAD; BACTERIAL STRAIN; BACTERIAL TRANSMISSION; BACTERIUM ISOLATE; BANGLADESH; CONTROLLED STUDY; DELETION MUTANT; DISEASE SURVEILLANCE; DRUG EFFECT; EPIDEMIC; FEMALE; GENOTYPING TECHNIQUE; HUMAN; MAJOR CLINICAL STUDY; MALE; MOLECULAR EPIDEMIOLOGY; MULTIDRUG RESISTANT TUBERCULOSIS; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; POSTPRIMARY TUBERCULOSIS; PRIORITY JOURNAL; RURAL AREA; STRAIN DIFFERENCE; TUBERCULOSIS; VARIABLE NUMBER OF TANDEM REPEAT;

ADOLESCENT; ADULT; AGED; AGED, 80 AND OVER; BACTERIAL TYPING TECHNIQUES; BANGLADESH; CLUSTER ANALYSIS; FEMALE; HUMANS; LATENT TUBERCULOSIS; MALE; MIDDLE AGED; MOLECULAR EPIDEMIOLOGY; MYCOBACTERIUM TUBERCULOSIS; RURAL POPULATION; TANDEM REPEAT SEQUENCES; TUBERCULOSIS; TUBERCULOSIS, MULTIDRUG-RESISTANT; YOUNG ADULT;

EID: 84857322709     PISSN: 10273719     EISSN: None     Source Type: Journal    
DOI: 10.5588/ijtld.11.0426     Document Type: Article

References (29)

1. van Embden J D, Cave M D, Crawford J T, et al. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J Clin Microbiol 1993; 31: 406-409. (Pubitemid 23028649)
2. Kamerbeek J, Schouls L, Kolk A, et al. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol 1997; 35: 907-914. (Pubitemid 27146535)
3. Brudey K, Driscoll J R, Rigouts L, et al. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiol 2006; 6: 23.
4. Van Soolingen D. Molecular epidemiology of tuberculosis and other mycobacterial infections: main methodologies and achievements. J Intern Med 2001; 249: 1-26. (Pubitemid 32147089)
5. Supply P, Magdalena J, Himpens S, Locht C. Identification of novel intergenic repetitive units in a mycobacterial two-component system operon. Mol Microbiol 1997; 26: 991-1003. (Pubitemid 27507883)
6. Supply P, Mazars E, Lesjean S, Vincent V, Gicquel B, Locht C. Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome. Mol Microbiol 2000; 36: 762-771. (Pubitemid 30258858)
7. Mazars E, Lesjean S, Banuls A L, et al. High-resolution mini-satellite- based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology. Proc Natl Acad Sci USA 2001; 98: 1901-1906. (Pubitemid 32165595)
8. Hawkey P M, Smith E G, Evans J T, et al. Mycobacterial inter-spersed repetitive unit typing of Mycobacterium tuberculosis compared to IS6110-based restriction fragment length polymorphism analysis for investigation of apparently clustered cases of tuberculosis. J Clin Microbiol 2003; 41: 3514-3520. (Pubitemid 36994676)
9. Brosch R, Gordon S V, Marmiesse M, et al. A new evolutionary scenario for the Mycobacterium tuberculosis complex. Proc Natl Acad Sci USA 2002; 99: 3684-3689. (Pubitemid 34252166)
10. Smith N H, Hewinson R G, Kremer K, Brosch R, Gordon S V. Myths and misconceptions: the origin and evolution of Mycobacterium tuberculosis. Nat Rev Microbiol 2009; 7: 537-544.
11. Glynn J R, Whiteley J, Bifani P J, Kremer K, van Soolingen D. Worldwide occurrence of Beijing/W strains of Mycobacterium tuberculosis: a systematic review. Emerg Infect Dis 2002; 8: 843.
12. Zaman K, Rahim Z, Yunus M, et al. Drug resistance of Mycobacterium tuberculosis in selected urban and rural areas in Bangladesh. Scand J Infect Dis 2005; 37: 21-26. (Pubitemid 40227736)
13. Kolk A H, Schuitema A R, Kuijper S, et al. Detection of Mycobacterium tuberculosis in clinical samples by using polymerase chain reaction and a nonradioactive detection system. J Clin Microbiol 1992; 30: 2567-2575.
14. Kox L F, Rhienthong D, Miranda A M, et al. A more reliable PCR for detection of Mycobacterium tuberculosis in clinical samples. J Clin Microbiol 1994; 32: 672-678. (Pubitemid 24062941)
15. Banu S, Gordon S V, Palmer S, et al. Genotypic analysis of Mycobacterium tuberculosis in Bangladesh and prevalence of the Beijing strain. J Clin Microbiol 2004; 42: 674-682. (Pubitemid 38222647)
16. Brudey K, Gordon M, Mostrom P, et al. Molecular epidemiology of Mycobacterium tuberculosis in western Sweden. J Clin Microbiol 2004; 42: 3046-3051. (Pubitemid 38938056)
17. Sola C, Filliol I, Legrand E, Mokrousov I, Rastogi N. Mycobacterium tuberculosis phylogeny reconstruction based on combined numerical analysis with IS1081, IS6110, VNTR, and DR-based spoligotyping suggests the existence of two new phylogeographical clades. J Mol Evol 2001; 53: 680-689. (Pubitemid 32989422)
18. Gagneux S, Small P M. Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development. Lancet Infect Dis 2007; 7: 328-337. (Pubitemid 46590063)
19. Rahim Z, Zaman K, van der Zanden A G, et al. Assessment of population structure and major circulating phylogeographical clades of Mycobacterium tuberculosis complex in Bangladesh suggests a high prevalence of a specific subclade of ancient M. tuberculosis genotypes. J Clin Microbiol 2007; 45: 3791-3794. (Pubitemid 350156887)
20. Filliol I, Driscoll J R, van Soolingen D, et al. Global distribution of Mycobacterium tuberculosis spoligotypes. Emerg Infect Dis 2002; 8: 1347-1349. (Pubitemid 35334712)
21. Diaz R, Kremer K, de Haas P E W, et al. Molecular epidemiology of tuberculosis in Cuba outside of Havana, July 1994-June 1995: utility of spoligotyping versus IS6110 restriction fragment length polymorphism. Int J Tuberc Lung Dis 1998; 2: 743-750.
22. Easterbrook P J, Gibson A, Murad S, et al. High rates of clustering of strains causing tuberculosis in Harare, Zimbabwe: a molecular epidemiological study. J Clin Microbiol 2004; 42: 4536-4544. (Pubitemid 39362368)
23. Small P M, Hopewell P C, Singh S P, et al. The epidemiology of tuberculosis in San Francisco. A population-based study using conventional and molecular methods. N Engl J Med 1994; 330: 1703-1709.
24. Valway S E, Sanchez M P, Shinnick T F, et al. An outbreak involving extensive transmission of a virulent strain of Mycobacterium tuberculosis. N Engl J Med 1998; 338: 633-639. (Pubitemid 28108432)
25. Alland D, Kalkut G E, Moss A R, et al. Transmission of tuberculosis in New York City. An analysis by DNA fingerprinting and conventional epidemiologic methods. N Engl J Med 1994; 330: 1710-1716.
26. van Deutekom H, Gerritsen J J, van Soolingen D, van Ameijden E J, van Embden J D, Coutinho R A. A molecular epidemiological approach to studying the transmission of tuberculosis in Amsterdam. Clin Infect Dis 1997; 25: 1071-1077. (Pubitemid 27513189)
27. Heldal E, Döcker H, Caugant D A, Tverdal A. Pulmonary tuberculosis in Norwegian patients. The role of reactivation, re-infection and primary infection assessed by previous mass screening data and restriction fragment length polymorphism analysis. Int J Tuberc Lung Dis 2000; 4: 300-307. (Pubitemid 30194103)
28. Pfyffer G E, Strassle A, Rose N, Wirth R, Brandli O, Shang H. Transmission of tuberculosis in the metropolitan area of Zurich: a 3 year survey based on DNA fingerprinting. Eur Respir J 1998; 11: 804-808. (Pubitemid 28231270)
29. World Health Organization. Report of the Nationwide Tuberculosis Diseases-cum-Infection Prevalence Survey (2007-2009). BAN-TUB-30. Geneva, Switzerland: WHO, 2010.