메뉴 건너뛰기




Volumn 91, Issue 1, 2012, Pages 1-8

The effect of functional compensation among duplicate genes can constrain their evolutionary divergence

Author keywords

evolutionary divergence; functional compensation; gene duplication; redundancy

Indexed keywords


EID: 84857222750     PISSN: 00221333     EISSN: 09737731     Source Type: Journal    
DOI: 10.1007/s12041-012-0125-y     Document Type: Article
Times cited : (6)

References (48)
  • 1
    • 40449095056 scopus 로고    scopus 로고
    • Evolution of protein domain promiscuity in eukaryotes
    • Basu M. K., Carmel L., Rogozin I. B. and Koonin E. 2008 Evolution of protein domain promiscuity in eukaryotes. Genome Res. 18, 449-461.
    • (2008) Genome Res. , vol.18 , pp. 449-461
    • Basu, M.K.1    Carmel, L.2    Rogozin, I.B.3    Koonin, E.4
  • 2
    • 79961126441 scopus 로고    scopus 로고
    • An ancient frame-shifting event in the highly conserved KPNA gene family has undergone extensive compensation by natural selection in vertebrates
    • Bozorgmehr J. E. H. 2011 An ancient frame-shifting event in the highly conserved KPNA gene family has undergone extensive compensation by natural selection in vertebrates. Biosystems105, 210-215.
    • (2011) Biosystems , vol.105 , pp. 210-215
    • Bozorgmehr, J.E.H.1
  • 3
    • 0037452958 scopus 로고    scopus 로고
    • Gene duplications: the gradual evolution of functional divergence
    • Brookfield J. F. 2003 Gene duplications: the gradual evolution of functional divergence. Curr. Biol. 13, 229-230.
    • (2003) Curr. Biol. , vol.13 , pp. 229-230
    • Brookfield, J.F.1
  • 4
    • 0028357241 scopus 로고
    • Multiple elements in human beta-globin locus control region 50 HS 2 are involved in enhancer activity and position-independent, transgene expression
    • Caterina J. J., Ciavatta D. J., Donze D., Behringer R. R. and Townes T. M. 1994 Multiple elements in human beta-globin locus control region 50 HS 2 are involved in enhancer activity and position-independent, transgene expression. Nucleic Acids Res. 22, 1006-1011.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 1006-1011
    • Caterina, J.J.1    Ciavatta, D.J.2    Donze, D.3    Behringer, R.R.4    Townes, T.M.5
  • 5
    • 0028348636 scopus 로고
    • Invasion and maintenance of a gene duplication
    • Clark A. G. 1994 Invasion and maintenance of a gene duplication. Proc. Natl. Acad. Sci. USA91, 2950-2954.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 2950-2954
    • Clark, A.G.1
  • 6
    • 37349011445 scopus 로고    scopus 로고
    • The Hill-Robertson effect: evolutionary consequences of weak selection and linkage in finite populations
    • Comeron J. M., Williford A. and Kliman R. M. 2008 The Hill-Robertson effect: evolutionary consequences of weak selection and linkage in finite populations. Heredity100, 19-31.
    • (2008) Heredity , vol.100 , pp. 19-31
    • Comeron, J.M.1    Williford, A.2    Kliman, R.M.3
  • 7
    • 0346672411 scopus 로고    scopus 로고
    • Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans
    • Conant G. C. and Wagner A. 2004 Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans. Proc. Biol. Sci. 271, 89-96.
    • (2004) Proc. Biol. Sci. , vol.271 , pp. 89-96
    • Conant, G.C.1    Wagner, A.2
  • 8
    • 48249132857 scopus 로고    scopus 로고
    • Pervasive and persistent redundancy among duplicated genes in yeast
    • Dean E. J., Davis J. C., Davis R. W. and Petrov D. A. 2008 Pervasive and persistent redundancy among duplicated genes in yeast. PLoS Genet. 4, e1000113.
    • (2008) PLoS Genet. , vol.4 , pp. 1000113
    • Dean, E.J.1    Davis, J.C.2    Davis, R.W.3    Petrov, D.A.4
  • 9
    • 34250219964 scopus 로고    scopus 로고
    • L1 elements, processed pseudogenes and retrogenes in mammalian genomes
    • Ding W., Lin L., Chen B. and Dai J. 2006 L1 elements, processed pseudogenes and retrogenes in mammalian genomes. IUBMB Life58, 677-685.
    • (2006) IUBMB Life , vol.58 , pp. 677-685
    • Ding, W.1    Lin, L.2    Chen, B.3    Dai, J.4
  • 10
    • 70349682921 scopus 로고    scopus 로고
    • Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes
    • Edger P. P. and Pires J. C. 2009 Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes. Chromosome Res. 17, 699-717.
    • (2009) Chromosome Res. , vol.17 , pp. 699-717
    • Edger, P.P.1    Pires, J.C.2
  • 11
    • 42549159277 scopus 로고    scopus 로고
    • Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization
    • Evans B. J., Chain F. J. and Ilieva D. 2008 Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization. BMC Evol. Biol. 8, 43.
    • (2008) BMC Evol. Biol. , vol.8 , pp. 43
    • Evans, B.J.1    Chain, F.J.2    Ilieva, D.3
  • 12
    • 33749342164 scopus 로고    scopus 로고
    • Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human
    • Goodstadt L. and Ponting C. P. 2006 Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human. PLoS Comput. Biol. 2, e133.
    • (2006) PLoS Comput. Biol. , vol.2 , pp. 133
    • Goodstadt, L.1    Ponting, C.P.2
  • 13
    • 0034628489 scopus 로고    scopus 로고
    • Maintenance of functional equivalence during paralogous Hox gene evolution
    • Greer J. M., Puetz J., Thomas K. R. and Capecchi M. R. 2000 Maintenance of functional equivalence during paralogous Hox gene evolution. Nature403, 661-665.
    • (2000) Nature , vol.403 , pp. 661-665
    • Greer, J.M.1    Puetz, J.2    Thomas, K.R.3    Capecchi, M.R.4
  • 14
    • 0347033256 scopus 로고    scopus 로고
    • Role of duplicate genes in genetic robustness against null mutations
    • Gu Z., Steinmetz L. M., Gu X., Scharfe C., Davis R. W. and Li W. H. 2003 Role of duplicate genes in genetic robustness against null mutations. Nature421, 63-66.
    • (2003) Nature , vol.421 , pp. 63-66
    • Gu, Z.1    Steinmetz, L.M.2    Gu, X.3    Scharfe, C.4    Davis, R.W.5    Li, W.H.6
  • 15
    • 34247847827 scopus 로고    scopus 로고
    • Functional analysis of gene duplications in Saccharomyces cerevisiae
    • Guan Y., Dunham M. J. and Troyanskaya O. G. 2007 Functional analysis of gene duplications in Saccharomyces cerevisiae. Genetics175, 933-943.
    • (2007) Genetics , vol.175 , pp. 933-943
    • Guan, Y.1    Dunham, M.J.2    Troyanskaya, O.G.3
  • 16
    • 74249119417 scopus 로고    scopus 로고
    • Evolutionary persistence of functional compensation by duplicate genes in Arabidopsis
    • Hanada K., Kuromori T., Myouga F., Toyoda T., Li W. H. and Shinozaki K. 2009 Evolutionary persistence of functional compensation by duplicate genes in Arabidopsis. Genome Biol. Evol. 1, 409-414.
    • (2009) Genome Biol. Evol. , vol.1 , pp. 409-414
    • Hanada, K.1    Kuromori, T.2    Myouga, F.3    Toyoda, T.4    Li, W.H.5    Shinozaki, K.6
  • 17
    • 59449097316 scopus 로고    scopus 로고
    • Buffering by gene duplicates: an analysis of molecular correlates and evolutionary conservation
    • Hannay K., Marcotte E. M. and Vogel C. 2008 Buffering by gene duplicates: an analysis of molecular correlates and evolutionary conservation. BMC Genomics9, 609.
    • (2008) BMC Genomics , vol.9 , pp. 609
    • Hannay, K.1    Marcotte, E.M.2    Vogel, C.3
  • 18
    • 33644782729 scopus 로고    scopus 로고
    • Transcriptional reprogramming and backup between duplicate genes: is it a genomewide phenomenon?
    • He X. and Zhang J. 2006 Transcriptional reprogramming and backup between duplicate genes: is it a genomewide phenomenon? Genetics172, 1363-1367.
    • (2006) Genetics , vol.172 , pp. 1363-1367
    • He, X.1    Zhang, J.2
  • 19
    • 41949116392 scopus 로고    scopus 로고
    • Role of duplicate genes in robustness against deleterious human mutations
    • Hsiao T. L. and Vitkup D. 2008 Role of duplicate genes in robustness against deleterious human mutations. PLoS Genet. 4, e1000014.
    • (2008) PLoS Genet. , vol.4 , pp. 1000014
    • Hsiao, T.L.1    Vitkup, D.2
  • 20
    • 34548831118 scopus 로고    scopus 로고
    • Evaluating dosage compensation as a cause of duplicate gene retention in Paramecium tetraurelia
    • Hughes T., Ekman D., Ardawatia H., Elofsson A. and Liberles D. A. 2007 Evaluating dosage compensation as a cause of duplicate gene retention in Paramecium tetraurelia. Genome Biol. 8, 213.
    • (2007) Genome Biol. , vol.8 , pp. 213
    • Hughes, T.1    Ekman, D.2    Ardawatia, H.3    Elofsson, A.4    Liberles, D.A.5
  • 21
    • 8744268628 scopus 로고    scopus 로고
    • Duplicated genes evolve slower than singletons despite the initial rate increase
    • Jordan I., Wolf Y. and Koonin E. 2004 Duplicated genes evolve slower than singletons despite the initial rate increase. BMC Evol. Biol. 4, 22.
    • (2004) BMC Evol. Biol. , vol.4 , pp. 22
    • Jordan, I.1    Wolf, Y.2    Koonin, E.3
  • 22
    • 33746793855 scopus 로고    scopus 로고
    • The regulatory utilization of genetic redundancy through responsive backup circuits
    • Kafri R., Levy M. and Pilpel Y. 2006 The regulatory utilization of genetic redundancy through responsive backup circuits. Proc. Natl. Acad. Sci. USA103, 11653-11658.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 11653-11658
    • Kafri, R.1    Levy, M.2    Pilpel, Y.3
  • 23
    • 0000800333 scopus 로고
    • On the probability of fixation of mutant genes in a population
    • Kimura M. 1962 On the probability of fixation of mutant genes in a population. Genetics47, 713-719.
    • (1962) Genetics , vol.47 , pp. 713-719
    • Kimura, M.1
  • 24
    • 33845487715 scopus 로고    scopus 로고
    • Balancing robustness and evolvability
    • Lenski R. E., Barrick J. E. and Ofria C. 2006 Balancing robustness and evolvability. PLoS Biol. 4, e428.
    • (2006) PLoS Biol. , vol.4 , pp. 428
    • Lenski, R.E.1    Barrick, J.E.2    Ofria, C.3
  • 25
    • 78649688381 scopus 로고    scopus 로고
    • The cellular robustness by genetic redundancy in budding yeast
    • Li J., Yuan Z. and Zhang Z. 2010 The cellular robustness by genetic redundancy in budding yeast. PLoS Genet. 6, e1001187.
    • (2010) PLoS Genet. , vol.6 , pp. 1001187
    • Li, J.1    Yuan, Z.2    Zhang, Z.3
  • 26
    • 70349969940 scopus 로고    scopus 로고
    • Functional compensation by duplicated genes in mouse
    • Liang H. and Li W. H. 2009 Functional compensation by duplicated genes in mouse. Trends Genet. 25, 441-442.
    • (2009) Trends Genet. , vol.25 , pp. 441-442
    • Liang, H.1    Li, W.H.2
  • 27
    • 77957559994 scopus 로고    scopus 로고
    • Evolution of enzymatic activities of testis-specific short-chain dehydrogenase/reductase in Drosophila
    • Long M., Zhang J., Yang H., Li L. and Dean A. M. 2010 Evolution of enzymatic activities of testis-specific short-chain dehydrogenase/reductase in Drosophila. J. Mol. Evol. 71, 241-249.
    • (2010) J. Mol. Evol. , vol.71 , pp. 241-249
    • Long, M.1    Zhang, J.2    Yang, H.3    Li, L.4    Dean, A.M.5
  • 28
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch M. and Conery J. 2000 The evolutionary fate and consequences of duplicate genes. Science290, 1151-1155.
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.2
  • 29
    • 0035697435 scopus 로고    scopus 로고
    • The probability of preservation of a newly arisen gene duplicate
    • Lynch M., O'Hely M., Walsh B. and Force A. 2001 The probability of preservation of a newly arisen gene duplicate. Genetics159, 1789-1804.
    • (2001) Genetics , vol.159 , pp. 1789-1804
    • Lynch, M.1    O'Hely, M.2    Walsh, B.3    Force, A.4
  • 30
    • 17044366688 scopus 로고    scopus 로고
    • Molecular mechanisms involved in robustness of yeast central metabolism against null mutations
    • Maltsev N., Glass E. M., Ovchinnikova G. and Gu Z. 2005 Molecular mechanisms involved in robustness of yeast central metabolism against null mutations. J. Biochem. 137, 177-187.
    • (2005) J. Biochem. , vol.137 , pp. 177-187
    • Maltsev, N.1    Glass, E.M.2    Ovchinnikova, G.3    Gu, Z.4
  • 31
    • 28244439813 scopus 로고    scopus 로고
    • X-ray crystallographic analysis of 6-aminohexanoate-dimer hydrolase: molecular basis for the birth of a nylon oligomer-degrading enzyme
    • Negoro S., Ohki T., Shibata N., Mizuno N., Wakitani Y., Tsurukame J. et al. 2005 X-ray crystallographic analysis of 6-aminohexanoate-dimer hydrolase: molecular basis for the birth of a nylon oligomer-degrading enzyme. J. Biol. Chem. 280, 39644-39652.
    • (2005) J. Biol. Chem. , vol.280 , pp. 39644-39652
    • Negoro, S.1    Ohki, T.2    Shibata, N.3    Mizuno, N.4    Wakitani, Y.5    Tsurukame, J.6
  • 32
    • 0034707210 scopus 로고    scopus 로고
    • Evolution of gene families
    • Ohta T. 2000 Evolution of gene families. Gene259, 45-52.
    • (2000) Gene , vol.259 , pp. 45-52
    • Ohta, T.1
  • 33
    • 52749098548 scopus 로고    scopus 로고
    • The fixation probability of beneficial mutations
    • Patwa Z. and Wahl L. M. 2008 The fixation probability of beneficial mutations. J. R. Soc. Interface5, 1279-1289.
    • (2008) J. R. Soc. Interface , vol.5 , pp. 1279-1289
    • Patwa, Z.1    Wahl, L.M.2
  • 35
    • 33646676990 scopus 로고    scopus 로고
    • Genome-wide search of gene conversions in duplicated genes of mouse and rat
    • Saitou N., Ezawa K. and Oota S. 2006 Genome-wide search of gene conversions in duplicated genes of mouse and rat. Mol. Biol. Evol. 23, 927-940.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 927-940
    • Saitou, N.1    Ezawa, K.2    Oota, S.3
  • 36
    • 0029126790 scopus 로고
    • Overexpression of genes in health and sickness. A bird's eye view
    • Shastry B. S. 1995 Overexpression of genes in health and sickness. A bird's eye view. Comp. Biochem. Physiol. B. Biochem. Mol. Biol. 112, 1-13.
    • (1995) Comp. Biochem. Physiol. B. Biochem. Mol. Biol. , vol.112 , pp. 1-13
    • Shastry, B.S.1
  • 37
    • 84984930236 scopus 로고    scopus 로고
    • Compensation or innovation?
    • Skipper M. 2003 Compensation or innovation? Nat. Rev. Genet. 4, 80.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 80
    • Skipper, M.1
  • 38
    • 58549085570 scopus 로고    scopus 로고
    • Gene duplication and the resolution of adaptive conflict
    • Storz J. F. 2009 Gene duplication and the resolution of adaptive conflict. Heredity102, 99-100.
    • (2009) Heredity , vol.102 , pp. 99-100
    • Storz, J.F.1
  • 39
    • 0033660945 scopus 로고    scopus 로고
    • The evolution of duplicated genes considering protein stability constraints
    • Taverna D. M. and Goldstein R. M. 2000 The evolution of duplicated genes considering protein stability constraints. Pac. Sym. Comput. Biol. 69-80.
    • (2000) Pac. Sym. Comput. Biol , pp. 69-80
    • Taverna, D.M.1    Goldstein, R.M.2
  • 41
    • 2442537233 scopus 로고    scopus 로고
    • Gene regulatory network growth by duplication
    • Teichmann S. A. and Babu M. M. 2004 Gene regulatory network growth by duplication. Nat. Genet. 36, 492-496.
    • (2004) Nat. Genet. , vol.36 , pp. 492-496
    • Teichmann, S.A.1    Babu, M.M.2
  • 42
    • 52949151512 scopus 로고    scopus 로고
    • Widespread conservation of genetic redundancy during a billion years of eukaryotic evolution
    • Vavouri T., Semple J. I. and Lehner B. 2008 Widespread conservation of genetic redundancy during a billion years of eukaryotic evolution. Trends Genet. 24, 485-488.
    • (2008) Trends Genet. , vol.24 , pp. 485-488
    • Vavouri, T.1    Semple, J.I.2    Lehner, B.3
  • 43
    • 0032921497 scopus 로고    scopus 로고
    • Redundant gene functions and natural selection
    • Wagner A. 1999 Redundant gene functions and natural selection. J. Evol. Biol. 12, 1-16.
    • (1999) J. Evol. Biol. , vol.12 , pp. 1-16
    • Wagner, A.1
  • 44
    • 0035339923 scopus 로고    scopus 로고
    • Birth and death of duplicated genes in completely sequenced eukaryotes
    • Wagner A. 2001 Birth and death of duplicated genes in completely sequenced eukaryotes. Trends Genet. 17, 237-239.
    • (2001) Trends Genet. , vol.17 , pp. 237-239
    • Wagner, A.1
  • 45
    • 0036262232 scopus 로고    scopus 로고
    • Selection and gene duplication: a view from the genome
    • Wagner A. 2002 Selection and gene duplication: a view from the genome. Genome Biol. 3, 1012. 1-1012. 3.
    • (2002) Genome Biol. , vol.3 , pp. 1-3
    • Wagner, A.1
  • 46
    • 19544389317 scopus 로고    scopus 로고
    • Energy constraints on the evolution of gene expression
    • Wagner A. 2005 Energy constraints on the evolution of gene expression. Mol. Biol. Evol. 22, 1365-1374.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1365-1374
    • Wagner, A.1
  • 47
    • 0037500141 scopus 로고    scopus 로고
    • Evolution by gene duplication: an update
    • Zhang J. 2003 Evolution by gene duplication: an update. Trends Ecol. Evol. 18, 292-298.
    • (2003) Trends Ecol. Evol. , vol.18 , pp. 292-298
    • Zhang, J.1
  • 48
    • 0042988057 scopus 로고    scopus 로고
    • Redundancy and robustness of systems of events
    • Ziha K. 2000 Redundancy and robustness of systems of events. Probabilistic engineering mechanics15, 347-357.
    • (2000) Probabilistic Engineering Mechanics , vol.15 , pp. 347-357
    • Ziha, K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.