메뉴 건너뛰기




Volumn 7, Issue 2, 2012, Pages

Haplotype affinities resolve a major component of goat (Capra hircus) mtDNA D-loop diversity and reveal specific features of the Sardinian stock

(30)  Piras, Daniela a   Doro, Maria Grazia a   Casu, Giuseppina a   Melis, Paola Maria a   Vaccargiu, Simona a   Piras, Ignazio b   Parracciani, Debora c   Stradoni, Roberta c   Frongia, Bruno c   Lai, Graziano c   Sale, Salvatore d   Cattari, Walter d   Piras, Roberto d   Querci, Ombretta d   Demuro, Piergiorgio d   Cui, Sandro d   Atzori, Franco d   Mancosu, Marco d   Marchiori, Francesca d   Cammelli, Rossana d   more..

a CNR   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA; DNA;

EID: 84857152189     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0030785     Document Type: Article
Times cited : (19)

References (53)
  • 1
    • 70450231699 scopus 로고    scopus 로고
    • Tracing the History of Goat Pastoralism: New Clues from Mitochondrial and Y Chromosome DNA in North Africa
    • Pereira F, Queiròs S, Gusmào L, Nijman IJ, Cuppen E, et al. (2009) Tracing the History of Goat Pastoralism: New Clues from Mitochondrial and Y Chromosome DNA in North Africa. Mol Biol Evol 26: 2765-2773.
    • (2009) Mol Biol Evol , vol.26 , pp. 2765-2773
    • Pereira, F.1    Queiròs, S.2    Gusmào, L.3    Nijman, I.J.4    Cuppen, E.5
  • 2
    • 0035826870 scopus 로고    scopus 로고
    • Multiple maternal origins and weak phylogeographic structure in domestic goats
    • Luikart G, Gielly L, Excoffier L, Vigne J-D, Bouvet J, et al. (2001) Multiple maternal origins and weak phylogeographic structure in domestic goats. Proc Natl Acad Sci USA 98: 5927-5932.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 5927-5932
    • Luikart, G.1    Gielly, L.2    Excoffier, L.3    Vigne, J.-D.4    Bouvet, J.5
  • 3
    • 33646777113 scopus 로고    scopus 로고
    • The Genetic Diversity of mtDNA D-loop and the Origin of Chinese Goats
    • Liu R-Y, Yang G-S, Lei C-Z, (2006) The Genetic Diversity of mtDNA D-loop and the Origin of Chinese Goats. Acta Genetica Sinica 33: 420-428.
    • (2006) Acta Genetica Sinica , vol.33 , pp. 420-428
    • Liu, R.-Y.1    Yang, G.-S.2    Lei, C.-Z.3
  • 4
    • 21244460361 scopus 로고    scopus 로고
    • The mtDNA catalogue of all Portuguese autochthonous goat (Capra hircus) breeds: high diversity of female at the western fringe of European distribution
    • Pereira F, Pereira L, Van Asch B, Bradley DG, Amorim A, (2005) The mtDNA catalogue of all Portuguese autochthonous goat (Capra hircus) breeds: high diversity of female at the western fringe of European distribution. Mol Ecol 14: 2313-2318.
    • (2005) Mol Ecol , vol.14 , pp. 2313-2318
    • Pereira, F.1    Pereira, L.2    van Asch, B.3    Bradley, D.G.4    Amorim, A.5
  • 5
    • 42449099846 scopus 로고    scopus 로고
    • Large-Scale Mitochondrial DNA Analysis of the Domestic Goat Reveals Six Haplogroups with High Diversity
    • Naderi S, Rezaei H-R, Taberlet P, Zundel S, Rafat S-A, et al. (2007) Large-Scale Mitochondrial DNA Analysis of the Domestic Goat Reveals Six Haplogroups with High Diversity. PLoS ONE 2: e1012.
    • (2007) PLoS ONE , vol.2
    • Naderi, S.1    Rezaei, H.-R.2    Taberlet, P.3    Zundel, S.4    Rafat, S.-A.5
  • 6
    • 77956500016 scopus 로고    scopus 로고
    • D-loop sequence mitochondrial DNA variability of Sarda goat and other goat breeds and populations reared in the Mediterranean area
    • Vacca GM, Daga C, Pazzola M, Carcangiu V, Dettori ML, et al. (2010) D-loop sequence mitochondrial DNA variability of Sarda goat and other goat breeds and populations reared in the Mediterranean area. J An Breed Genet 127: 352-360.
    • (2010) J An Breed Genet , vol.127 , pp. 352-360
    • Vacca, G.M.1    Daga, C.2    Pazzola, M.3    Carcangiu, V.4    Dettori, M.L.5
  • 7
    • 36248970706 scopus 로고    scopus 로고
    • The genetic diversity of seven indigenous Chinese goat breeds
    • Wang J, Chen YL, Wang XL, Yang ZX, (2008) The genetic diversity of seven indigenous Chinese goat breeds. Small Rumin Res 74: 231-237.
    • (2008) Small Rumin Res , vol.74 , pp. 231-237
    • Wang, J.1    Chen, Y.L.2    Wang, X.L.3    Yang, Z.X.4
  • 8
    • 68349154105 scopus 로고    scopus 로고
    • A fine map for maternal lineage analysis by mitochondrial hypervariable region in 12 Chinese goat breeds
    • Wu Y-P, Guan W-J, Zhao Q-J, He X-H, Pu Y-B, et al. (2009) A fine map for maternal lineage analysis by mitochondrial hypervariable region in 12 Chinese goat breeds. Animal Sci J 80: 372-380.
    • (2009) Animal Sci J , vol.80 , pp. 372-380
    • Wu, Y.-P.1    Guan, W.-J.2    Zhao, Q.-J.3    He, X.-H.4    Pu, Y.-B.5
  • 9
    • 0242354083 scopus 로고    scopus 로고
    • DNA markers reveal the complexity of livestock domestication
    • Bruford MW, Bradley DG, Luikart G, (2003) DNA markers reveal the complexity of livestock domestication. Nat Rev Genet 4: 900-910.
    • (2003) Nat Rev Genet , vol.4 , pp. 900-910
    • Bruford, M.W.1    Bradley, D.G.2    Luikart, G.3
  • 10
    • 0037043719 scopus 로고    scopus 로고
    • Evolution, consequences and future of plant and animal domestication
    • Diamond J, (2002) Evolution, consequences and future of plant and animal domestication. Nature 418: 700-707.
    • (2002) Nature , vol.418 , pp. 700-707
    • Diamond, J.1
  • 13
    • 0345304399 scopus 로고    scopus 로고
    • The power and promise of population genomics: from genotyping to genome typing
    • Luikart G, England PR, Tallmon D, Jordan S, Taberlet P, (2003) The power and promise of population genomics: from genotyping to genome typing. Nat Rev Genet 4: 981-994.
    • (2003) Nat Rev Genet , vol.4 , pp. 981-994
    • Luikart, G.1    England, P.R.2    Tallmon, D.3    Jordan, S.4    Taberlet, P.5
  • 16
    • 0007194209 scopus 로고
    • La fauna di Filiestru (Trincea D)
    • In: Trump DH, editors, Sassari, Italy, Dessì
    • Levine M, (1983) La fauna di Filiestru (Trincea D) In: Trump DH, editors. La grotta di Filiestru a Bonu Ighinu, Mara (SS) Sassari, Italy Dessì.
    • (1983) La Grotta Di Filiestru a Bonu Ighinu, Mara (SS)
    • Levine, M.1
  • 18
    • 1542540995 scopus 로고    scopus 로고
    • The Italian Neolithic: A Synthesis of Research
    • Malone C, (2003) The Italian Neolithic: A Synthesis of Research. J World Prehist 17: 235-312.
    • (2003) J World Prehist , vol.17 , pp. 235-312
    • Malone, C.1
  • 26
    • 0035988978 scopus 로고    scopus 로고
    • Genetic distances within and across cattle breeds as indicated by biallelic AFLP markers
    • Ajmone-Marsan P, Negrini R, Milanesi E, Bozzi R, Nijman IJ, et al. (2002) Genetic distances within and across cattle breeds as indicated by biallelic AFLP markers. Animal Genet 33: 280-286.
    • (2002) Animal Genet , vol.33 , pp. 280-286
    • Ajmone-Marsan, P.1    Negrini, R.2    Milanesi, E.3    Bozzi, R.4    Nijman, I.J.5
  • 27
    • 13944279172 scopus 로고    scopus 로고
    • Genetic diversity of Southern Italian goat populations assessed by microsatellite markers
    • Iamartino D, Buzzone A, Lanza A, Blasi M, Pilla F, (2005) Genetic diversity of Southern Italian goat populations assessed by microsatellite markers. Small Ruminant Res 57: 249-255.
    • (2005) Small Ruminant Res , vol.57 , pp. 249-255
    • Iamartino, D.1    Buzzone, A.2    Lanza, A.3    Blasi, M.4    Pilla, F.5
  • 28
    • 33645792098 scopus 로고    scopus 로고
    • Genetic diversity of Sardinian goat population based on microsatellites
    • Sechi T, Usai MG, Casu S, Carta A, (2005) Genetic diversity of Sardinian goat population based on microsatellites. Ital J Animal Sci 4: 58-60.
    • (2005) Ital J Animal Sci , vol.4 , pp. 58-60
    • Sechi, T.1    Usai, M.G.2    Casu, S.3    Carta, A.4
  • 29
    • 36749004373 scopus 로고    scopus 로고
    • Identifying native animals in crossbred populations: the case of the Sardinian goat population
    • Sechi T, Usai MG, Miari S, Mura L, Casu S, et al. (2007) Identifying native animals in crossbred populations: the case of the Sardinian goat population. Animal Genet 38: 614-620.
    • (2007) Animal Genet , vol.38 , pp. 614-620
    • Sechi, T.1    Usai, M.G.2    Miari, S.3    Mura, L.4    Casu, S.5
  • 30
    • 0030451420 scopus 로고    scopus 로고
    • Among-site rate variation and its impact on phylogenetic analyses
    • Yang Z, (1996) Among-site rate variation and its impact on phylogenetic analyses. Trends Ecol Evol 11: 367-372.
    • (1996) Trends Ecol Evol , vol.11 , pp. 367-372
    • Yang, Z.1
  • 32
    • 0036178949 scopus 로고    scopus 로고
    • A nomenclature system for the tree of human Y-chromosomal binary haplogroups
    • Y Chromosome Consortium
    • Y Chromosome Consortium (2002) A nomenclature system for the tree of human Y-chromosomal binary haplogroups. Genome Res 12: 339-348.
    • (2002) Genome Res , vol.12 , pp. 339-348
  • 33
    • 58149515809 scopus 로고    scopus 로고
    • An international panorama of goat selection and breeds
    • Dubeuf J-P, Boyazoglu J, (2009) An international panorama of goat selection and breeds. Livestock Sci 120: 225-231.
    • (2009) Livestock Sci , vol.120 , pp. 225-231
    • Dubeuf, J.-P.1    Boyazoglu, J.2
  • 34
    • 70350462149 scopus 로고    scopus 로고
    • Geographical patterning of sixteen goat breeds from Italy, Albania and Greece assessed by Single Nucleotide Polymorphisms
    • Pariset L, Cuteri A, Ligda C, Ajmone-Marsan P, Valentini A, et al. (2009) Geographical patterning of sixteen goat breeds from Italy, Albania and Greece assessed by Single Nucleotide Polymorphisms. BMC Ecology 9: 20.
    • (2009) BMC Ecology , vol.9 , pp. 20
    • Pariset, L.1    Cuteri, A.2    Ligda, C.3    Ajmone-Marsan, P.4    Valentini, A.5
  • 36
    • 70349311740 scopus 로고    scopus 로고
    • How does farmer connectivity influence livestock genetic structure? A case-study in a Vietnamese goat population
    • Berthouly C, Do Ngoc D, Thévenon S, Bouchel D, Nhu Van T, et al. (2009) How does farmer connectivity influence livestock genetic structure? A case-study in a Vietnamese goat population. Mol Ecol 18: 3980-3991.
    • (2009) Mol Ecol , vol.18 , pp. 3980-3991
    • Berthouly, C.1    Do Ngoc, D.2    Thévenon, S.3    Bouchel, D.4    Nhu Van, T.5
  • 37
    • 33750360460 scopus 로고    scopus 로고
    • Divergent mtDNA lineages of goats in an Early Neolithic site, far from the initial domestication areas
    • Fernàndez H, Hughes S, Vigne J-D, Helmer D, Hodgins G, et al. (2006) Divergent mtDNA lineages of goats in an Early Neolithic site, far from the initial domestication areas. Proc Natl Acad Sci USA 103: 15375-15379.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 15375-15379
    • Fernàndez, H.1    Hughes, S.2    Vigne, J.-D.3    Helmer, D.4    Hodgins, G.5
  • 38
    • 84857171754 scopus 로고    scopus 로고
    • Some suggestions on how to preserve both within- and between-breed genetic diversity
    • 53rd Annual Meeting of the European Association for Animal Production.Cairo, Egypt
    • Ollivier L, Foulley JL, (2002) Some suggestions on how to preserve both within- and between-breed genetic diversity. 53rd Annual Meeting of the European Association for Animal Production.Cairo, Egypt.
    • (2002)
    • Ollivier, L.1    Foulley, J.L.2
  • 39
    • 20544433707 scopus 로고    scopus 로고
    • Decision making in livestock conservation
    • Simianer H, (2005) Decision making in livestock conservation. Ecological Economics 53: 559-572.
    • (2005) Ecological Economics , vol.53 , pp. 559-572
    • Simianer, H.1
  • 40
    • 77956068579 scopus 로고    scopus 로고
    • Comparisons between mitochondrial genomes of domestic goat (Capra hircus) reveal the presence of numts and multiple sequencing errors
    • Hassanin A, Bonillo C, Nguyen BX, Cruaud C, (2010) Comparisons between mitochondrial genomes of domestic goat (Capra hircus) reveal the presence of numts and multiple sequencing errors. Mitochondrial DNA 21: 68-76.
    • (2010) Mitochondrial DNA , vol.21 , pp. 68-76
    • Hassanin, A.1    Bonillo, C.2    Nguyen, B.X.3    Cruaud, C.4
  • 41
    • 0032972599 scopus 로고    scopus 로고
    • DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis
    • Rozas J, Rozas R, (1999) DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
    • (1999) Bioinformatics , vol.15 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 42
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogeny
    • Huelsenbeck JP, Ronquist F, (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics 19: 754-755.
    • (2001) Bioinformatics , vol.19 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 43
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP, (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 44
    • 78751558547 scopus 로고    scopus 로고
    • Creating the CIPRES Science Gateway for inference of large phylogenetic trees
    • Proceedings of the Gateway Computing Environments Workshop (GCE).New Orleans, LA
    • Miller MA, Pfeiffer W, Schwartz T, (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. pp. 1-8 Proceedings of the Gateway Computing Environments Workshop (GCE).New Orleans, LA.
    • (2010) , pp. 1-8
    • Miller, M.A.1    Pfeiffer, W.2    Schwartz, T.3
  • 45
    • 0022376704 scopus 로고
    • Dating the human-ape split by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano T, (1985) Dating the human-ape split by a molecular clock of mitochondrial DNA. J Mol Evol 22: 160-174.
    • (1985) J Mol Evol , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 46
    • 45949109669 scopus 로고    scopus 로고
    • MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences
    • Kumar S, Nei M, Dudley J, Tamura K, (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9: 299-306.
    • (2008) Brief Bioinform , vol.9 , pp. 299-306
    • Kumar, S.1    Nei, M.2    Dudley, J.3    Tamura, K.4
  • 47
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • Bandelt HJ, Forster P, Rohl A, (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16: 37-48.
    • (1999) Mol Biol Evol , vol.16 , pp. 37-48
    • Bandelt, H.J.1    Forster, P.2    Rohl, A.3
  • 48
    • 0035711599 scopus 로고    scopus 로고
    • Mutation and linkage disequilibrium in human mtDNA
    • Hedrick P, Kumar S, (2001) Mutation and linkage disequilibrium in human mtDNA. Eur J Hum Genet 9: 969-972.
    • (2001) Eur J Hum Genet , vol.9 , pp. 969-972
    • Hedrick, P.1    Kumar, S.2
  • 49
    • 0029149631 scopus 로고
    • Mitochondrial portraits of human populations using median networks
    • Bandelt HJ, Forster P, Sykes BC, Richards MB, (1995) Mitochondrial portraits of human populations using median networks. Genetics 141: 743-753.
    • (1995) Genetics , vol.141 , pp. 743-753
    • Bandelt, H.J.1    Forster, P.2    Sykes, B.C.3    Richards, M.B.4
  • 50
    • 0029794184 scopus 로고    scopus 로고
    • Origin and evolution of Native American mtDNA variation: a reappraisal
    • Forster P, Harding R, Torroni A, Bandelt HJ, (1996) Origin and evolution of Native American mtDNA variation: a reappraisal. Am J Hum Genet 59: 935-945.
    • (1996) Am J Hum Genet , vol.59 , pp. 935-945
    • Forster, P.1    Harding, R.2    Torroni, A.3    Bandelt, H.J.4
  • 51
    • 0033842913 scopus 로고    scopus 로고
    • mtDNA Variation among Greenland Eskimos: The Edge of the Beringian Expansion
    • Saillard J, Forster P, Lynnerup N, Bandelt H-J, Nørby S, (2000) mtDNA Variation among Greenland Eskimos: The Edge of the Beringian Expansion. Am J Hum Genet 67: 718-726.
    • (2000) Am J Hum Genet , vol.67 , pp. 718-726
    • Saillard, J.1    Forster, P.2    Lynnerup, N.3    Bandelt, H.-J.4    Nørby, S.5
  • 52
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin ver. 3.0: An integrated software package for population genetics data analysis
    • Excoffier L, Laval G, Schneider S, (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol Bioinformatics Online 1: 47-50.
    • (2005) Evol Bioinformatics Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 53
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic differences
    • Rogers AR, Harpending H, (1992) Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9: 552-569.
    • (1992) Mol Biol Evol , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.