-
1
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee B, Richards FM (1971) The interpretation of protein structures: estimation of static accessibility. J Mol Biol 55:379-400.
-
(1971)
J Mol Biol
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
2
-
-
0017429069
-
Areas, volumes, packing, and protein structure
-
Richards FM (1977) Areas, volumes, packing, and protein structure. Annu Rev Biophys Bio 6:151-176.
-
(1977)
Annu Rev Biophys Bio
, vol.6
, pp. 151-176
-
-
Richards, F.M.1
-
3
-
-
0028048679
-
Core-packing constraints, hydrophobicity and protein design
-
DOI 10.1016/0958-1669(94)90048-5
-
Baldwin EP, Matthews BW (1994) Core-packing constraints, hydrophobicity and protein design. Curr Opin Biotech 5:396-402. (Pubitemid 24254290)
-
(1994)
Current Opinion in Biotechnology
, vol.5
, Issue.4
, pp. 396-402
-
-
Baldwin, E.P.1
Matthews, B.W.2
-
4
-
-
0025856806
-
Denatured states of proteins
-
Dill KA, Shortle D (1991) Denatured states of proteins. Annu Rev Biochem 60:795-825.
-
(1991)
Annu Rev Biochem
, vol.60
, pp. 795-825
-
-
Dill, K.A.1
Shortle, D.2
-
5
-
-
51249094501
-
Kinetics and thermodynamics of ligand binding to a molten globular enzyme and its native counterpart
-
Vamvaca K, Jelesarov I, Hilvert D (2008) Kinetics and thermodynamics of ligand binding to a molten globular enzyme and its native counterpart. J Mol Biol 382:971-977.
-
(2008)
J Mol Biol
, vol.382
, pp. 971-977
-
-
Vamvaca, K.1
Jelesarov, I.2
Hilvert, D.3
-
6
-
-
0023155210
-
Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes
-
DOI 10.1016/0022-2836(87)90358-5
-
Ponder JW, Richards FM (1987) Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes. J Mol Biol 193:775-791. (Pubitemid 17020078)
-
(1987)
Journal of Molecular Biology
, vol.193
, Issue.4
, pp. 775-791
-
-
Ponder, J.W.1
Richards, F.M.2
-
7
-
-
0035838974
-
Extending the accuracy limits of prediction for side-chain conformations
-
DOI 10.1006/jmbi.2001.4865
-
Xiang Z, Honig B (2001) Extending the accuracy limits of prediction for side-chain conformations1. J Mol Biol 311:421-430. (Pubitemid 32744551)
-
(2001)
Journal of Molecular Biology
, vol.311
, Issue.2
, pp. 421-430
-
-
Xiang, Z.1
Honig, B.2
-
9
-
-
33846603216
-
High-resolution Structural and Thermodynamic Analysis of Extreme Stabilization of Human Procarboxypeptidase by Computational Protein Design
-
DOI 10.1016/j.jmb.2006.11.080, PII S0022283606016391
-
Dantas G, et al. (2007) High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design. J Mol Biol 366:1209-1221. (Pubitemid 46186384)
-
(2007)
Journal of Molecular Biology
, vol.366
, Issue.4
, pp. 1209-1221
-
-
Dantas, G.1
Corrent, C.2
Reichow, S.L.3
Havranek, J.J.4
Eletr, Z.M.5
Isern, N.G.6
Kuhlman, B.7
Varani, G.8
Merritt, E.A.9
Baker, D.10
-
11
-
-
0030057864
-
What makes a protein a protein? Hydrophobic core designs that specify stability and structural properties
-
Munson M, et al. (1996) What makes a protein a protein? Hydrophobic core designs that specify stability and structural properties. Protein Sci 5:1584-1593. (Pubitemid 26257222)
-
(1996)
Protein Science
, vol.5
, Issue.8
, pp. 1584-1593
-
-
Munson, M.1
Balasubramanian, S.2
Fleming, K.G.3
Nagi, A.D.4
O'Brien, R.5
Sturtevant, J.M.6
Regan, L.7
-
12
-
-
0031779918
-
Design, structure and stability of a hyperthermophilic protein variant
-
DOI 10.1038/nsb0698-470
-
Malakauskas SM, Mayo SL (1998) Design, structure and stability of a hyperthermophilic protein variant. Nat Struct Biol 5:470-475. (Pubitemid 28265030)
-
(1998)
Nature Structural Biology
, vol.5
, Issue.6
, pp. 470-475
-
-
Malakauskas, S.M.1
Mayo, S.L.2
-
13
-
-
0020394274
-
A correlation between protein thermostability and resistance to proteolysis
-
Daniel RM, Cowan DA, Morgan HW, Curran MP (1982) A correlation between protein thermostability and resistance to proteolysis. Biochem J 207:641.
-
(1982)
Biochem J
, vol.207
, pp. 641
-
-
Daniel, R.M.1
Cowan, D.A.2
Morgan, H.W.3
Curran, M.P.4
-
15
-
-
18244373419
-
Computational thermostabilization of an enzyme
-
DOI 10.1126/science.1107387
-
Korkegian A, Black ME, Baker D, Stoddard BL (2005) Computational thermostabilization of an enzyme. Science 308:857-860. (Pubitemid 40629266)
-
(2005)
Science
, vol.308
, Issue.5723
, pp. 857-860
-
-
Korkegian, A.1
Black, M.E.2
Baker, D.3
Stoddard, B.L.4
-
16
-
-
58149463441
-
RosettaHoles: Rapid assessment of protein core packing for structure prediction, refinement, design, and validation
-
Sheffler W, Baker D (2009) RosettaHoles: Rapid assessment of protein core packing for structure prediction, refinement, design, and validation. Protein Sci 18:229-239.
-
(2009)
Protein Sci
, vol.18
, pp. 229-239
-
-
Sheffler, W.1
Baker, D.2
-
17
-
-
77957296071
-
RosettaHoles2: A volumetric packing measure for protein structure refinement and validation
-
Sheffler W, Baker D (2010) RosettaHoles2: A volumetric packing measure for protein structure refinement and validation. Protein Sci 19:1991-1995.
-
(2010)
Protein Sci
, vol.19
, pp. 1991-1995
-
-
Sheffler, W.1
Baker, D.2
-
18
-
-
84973587732
-
A coefficient of agreement for nominal scales
-
Cohen J (1960) A coefficient of agreement for nominal scales. Educ Psychol Meas 20:37-46.
-
(1960)
Educ Psychol Meas
, vol.20
, pp. 37-46
-
-
Cohen, J.1
-
19
-
-
0041387567
-
A large scale test of computational protein design: Folding and stability of nine completely redesigned globular proteins
-
DOI 10.1016/S0022-2836(03)00888-X
-
Dantas G, Kuhlman B, Callender D, Wong M, Baker D (2003) A large scale test of computational protein design: Folding and stability of nine completely redesigned globular proteins. J Mol Biol 332:449-460. (Pubitemid 37013512)
-
(2003)
Journal of Molecular Biology
, vol.332
, Issue.2
, pp. 449-460
-
-
Dantas, G.1
Kuhlman, B.2
Callender, D.3
Wong, M.4
Baker, D.5
-
21
-
-
77950673061
-
Practically useful: What the Rosetta protein modeling suite can do for you
-
Kaufmann KW, Lemmon GH, DeLuca SL, Sheehan JH, Meiler J (2010) Practically useful: What the Rosetta protein modeling suite can do for you. Biochem 49:2987-2998.
-
(2010)
Biochem
, vol.49
, pp. 2987-2998
-
-
Kaufmann, K.W.1
Lemmon, G.H.2
DeLuca, S.L.3
Sheehan, J.H.4
Meiler, J.5
-
22
-
-
78650905964
-
ROSETTA3: An object-oriented software suite for the simulation and design of macromolecules
-
Leaver-Fay A, et al. (2011) ROSETTA3: An object-oriented software suite for the simulation and design of macromolecules. Method Enzymol 487:545-574.
-
(2011)
Method Enzymol
, vol.487
, pp. 545-574
-
-
Leaver-Fay, A.1
-
23
-
-
0037470581
-
An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes
-
DOI 10.1016/S0022-2836(03)00021-4
-
Kortemme T, Morozov AV, Baker D (2003) An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes. J Mol Biol 326:1239-1259. (Pubitemid 36263395)
-
(2003)
Journal of Molecular Biology
, vol.326
, Issue.4
, pp. 1239-1259
-
-
Kortemme, T.1
Morozov, A.V.2
Baker, D.3
-
24
-
-
14844294424
-
Protein production by auto-induction in high-density shaking cultures
-
Studier FW (2005) Protein production by auto-induction in high-density shaking cultures. Protein Expr Purif 41:207-234.
-
(2005)
Protein Expr Purif
, vol.41
, pp. 207-234
-
-
Studier, F.W.1
-
25
-
-
0024448151
-
Calculation of protein extinction coefficients from amino acid sequence data
-
Gill SC, von Hippel PH (1989) Calculation of protein extinction coefficients from amino acid sequence data. Anal Biochem 182:319-326. (Pubitemid 19277112)
-
(1989)
Analytical Biochemistry
, vol.182
, Issue.2
, pp. 319-326
-
-
Gill, S.C.1
Von Hippel, P.H.2
-
26
-
-
1642486696
-
Analysis of circular dichroism data
-
Greenfield NJ (2004) Analysis of circular dichroism data. Method Enzymol 383:282-317.
-
(2004)
Method Enzymol
, vol.383
, pp. 282-317
-
-
Greenfield, N.J.1
-
27
-
-
0023697408
-
Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl. alpha.-chymotrypsin using different denaturants
-
Santoro MM, Bolen DW (1988) Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl. alpha.-chymotrypsin using different denaturants. Biochem 27:8063-8068.
-
(1988)
Biochem
, vol.27
, pp. 8063-8068
-
-
Santoro, M.M.1
Bolen, D.W.2
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